Wall clock time and date at job start Sat Apr 11 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34244 * 125.74634 * 2 1 4 4 C 1.38057 * 107.43738 * 180.02562 * 3 2 1 5 5 C 1.47395 * 126.42102 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00093 * 139.78986 * 5 4 3 7 7 N 1.34778 * 119.99910 * 319.77862 * 5 4 3 8 8 C 1.46924 * 120.63204 * 354.49622 * 7 5 4 9 9 C 1.53189 * 108.77741 * 233.60751 * 8 7 5 10 10 C 1.53041 * 109.31026 * 305.36276 * 9 8 7 11 11 C 1.53041 * 109.53899 * 61.36498 * 10 9 8 12 12 H 1.09003 * 109.49520 * 58.61279 * 11 10 9 13 13 C 1.50691 * 109.49973 * 178.68244 * 11 10 9 14 14 H 1.08007 * 120.00091 * 359.93383 * 13 11 10 15 15 C 1.37883 * 120.00129 * 179.66286 * 13 11 10 16 16 N 1.31513 * 120.00065 * 0.27028 * 15 13 11 17 17 Si 1.86806 * 119.99904 * 180.27459 * 15 13 11 18 18 H 1.48499 * 109.47088 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.46757 * 119.99775 * 17 15 13 20 20 H 1.48493 * 109.46885 * 239.99715 * 17 15 13 21 21 C 1.46934 * 120.60463 * 174.51221 * 7 5 4 22 22 C 1.41365 * 107.15917 * 0.24279 * 4 3 2 23 23 Br 1.89096 * 126.00410 * 179.75468 * 22 4 3 24 24 N 1.30516 * 107.99624 * 359.59030 * 22 4 3 25 25 H 1.09005 * 109.47462 * 89.99427 * 1 2 3 26 26 H 1.08998 * 109.47661 * 209.99436 * 1 2 3 27 27 H 1.09003 * 109.47082 * 329.99951 * 1 2 3 28 28 H 1.08004 * 126.27830 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.58596 * 113.81727 * 8 7 5 30 30 H 1.09007 * 109.58460 * 353.39826 * 8 7 5 31 31 H 1.09001 * 109.49817 * 185.41009 * 9 8 7 32 32 H 1.09001 * 109.49520 * 65.31371 * 9 8 7 33 33 H 1.08996 * 109.46407 * 301.34419 * 10 9 8 34 34 H 1.08996 * 109.45654 * 181.38520 * 10 9 8 35 35 H 0.96996 * 120.00119 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.61399 * 6.62593 * 21 7 5 37 37 H 1.08997 * 109.56584 * 246.19544 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5598 0.6558 -0.0006 5 6 4.7632 1.5069 -0.0013 6 8 5.7244 1.2015 0.6781 7 7 4.7984 2.6236 -0.7553 8 6 3.6957 2.9427 -1.6723 9 6 4.2709 3.1760 -3.0728 10 6 5.3591 4.2497 -3.0006 11 6 6.4902 3.7715 -2.0873 12 1 6.8991 2.8376 -2.4731 13 6 7.5759 4.8155 -2.0425 14 1 7.4708 5.7287 -2.6096 15 6 8.7011 4.6074 -1.2732 16 7 8.8292 3.4955 -0.5827 17 14 10.0435 5.9050 -1.2116 18 1 9.6612 7.0540 -2.0712 19 1 10.2188 6.3698 0.1879 20 1 11.3180 5.3224 -1.7030 21 6 5.9407 3.5443 -0.6755 22 6 3.5315 -0.7575 -0.0067 23 35 5.0386 -1.8995 -0.0167 24 7 2.2823 -1.1358 -0.0006 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.9158 2.1169 -0.0004 29 1 3.1864 3.8442 -1.3316 30 1 2.9914 2.1112 -1.7003 31 1 3.4767 3.5073 -3.7418 32 1 4.7003 2.2474 -3.4490 33 1 4.9346 5.1707 -2.6011 34 1 5.7529 4.4352 -3.9998 35 1 9.6205 3.3493 -0.0412 36 1 6.7176 3.1099 -0.0465 37 1 5.6146 4.4948 -0.2531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898580047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:06 Heat of formation + Delta-G solvation = 26.355268 kcal Electronic energy + Delta-G solvation = -22119.247905 eV Core-core repulsion = 18750.784781 eV Total energy + Delta-G solvation = -3368.463124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.60883 -40.51142 -38.17029 -35.28207 -34.72163 -33.49723 -32.14380 -31.82343 -31.04674 -27.91453 -26.95531 -26.11421 -23.47277 -23.27001 -22.00763 -21.24556 -20.00294 -18.58690 -17.92488 -17.46175 -16.78339 -16.62157 -16.27491 -15.82933 -15.47240 -15.12407 -14.83148 -14.56665 -14.24156 -14.16027 -13.95711 -13.66242 -13.48729 -13.36144 -12.88527 -12.66488 -12.33360 -12.22673 -12.19769 -12.09763 -11.76349 -11.58365 -11.43724 -11.02785 -10.89749 -10.66507 -10.48677 -10.36776 -9.78829 -9.28144 -8.05674 -6.23296 0.06276 0.44896 0.76683 1.42090 1.43730 1.55527 1.60720 2.06278 2.41297 2.48313 3.22171 3.39114 3.72146 3.98987 4.11021 4.20158 4.22967 4.41068 4.46859 4.48851 4.64626 4.73988 4.76152 4.80828 4.85292 4.94077 5.14229 5.31280 5.33270 5.43133 5.61028 5.71198 5.77156 5.97056 6.07520 6.14104 6.38567 6.75690 6.90585 7.42519 7.47732 8.97411 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.004187 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.376277 B = 6686.058297 C = 7924.624026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.338 5.338 3 C 0.130 3.870 4 C -0.282 4.282 5 C 0.573 3.427 6 O -0.576 6.576 7 N -0.603 5.603 8 C 0.100 3.900 9 C -0.128 4.128 10 C -0.104 4.104 11 C 0.037 3.963 12 H -0.020 1.020 13 C -0.534 4.534 14 H 0.063 0.937 15 C 0.010 3.990 16 N -0.914 5.914 17 Si 0.955 3.045 18 H -0.259 1.259 19 H -0.282 1.282 20 H -0.286 1.286 21 C 0.128 3.872 22 C 0.095 3.905 23 Br 0.032 6.968 24 N -0.284 5.284 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.238 0.762 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.039 0.961 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.258 0.742 36 H 0.076 0.924 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.711 -5.776 -0.690 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.118 5.118 3 C -0.023 4.023 4 C -0.299 4.299 5 C 0.361 3.639 6 O -0.455 6.455 7 N -0.335 5.335 8 C -0.021 4.021 9 C -0.166 4.166 10 C -0.141 4.141 11 C 0.018 3.982 12 H -0.002 1.002 13 C -0.572 4.572 14 H 0.081 0.919 15 C -0.189 4.189 16 N -0.553 5.553 17 Si 0.781 3.219 18 H -0.183 1.183 19 H -0.208 1.208 20 H -0.212 1.212 21 C 0.006 3.994 22 C -0.149 4.149 23 Br 0.113 6.887 24 N -0.109 5.109 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.150 0.850 28 H 0.254 0.746 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -22.540 -7.435 -0.226 23.735 hybrid contribution 1.832 1.089 0.224 2.143 sum -20.708 -6.346 -0.001 21.658 Atomic orbital electron populations 1.22645 0.69314 1.07320 1.06294 1.48826 1.08792 1.02197 1.51990 1.23655 0.87703 0.95612 0.95298 1.20138 0.94592 0.91913 1.23260 1.17729 0.86076 0.80456 0.79635 1.90787 1.38131 1.71928 1.44701 1.48328 1.22245 1.22422 1.40516 1.22185 0.88514 1.02598 0.88849 1.21915 0.99048 0.98533 0.97079 1.21503 0.95554 0.98169 0.98903 1.18909 0.93112 0.94426 0.91777 1.00177 1.21547 1.03303 1.04402 1.27991 0.91912 1.25885 1.00634 0.97224 0.95173 1.70114 1.28792 1.26359 1.29991 0.85544 0.78930 0.79575 0.77839 1.18303 1.20823 1.21198 1.21687 0.86699 0.90128 1.00861 1.23894 0.93173 0.93212 1.04636 1.96783 1.32082 1.62258 1.97549 1.77219 0.99464 1.09514 1.24719 0.87651 0.88277 0.85019 0.74573 0.88548 0.88151 0.87618 0.94220 0.91780 0.93368 0.93247 0.90590 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.44 127.77 1.46 1.89 16 2 N -0.34 -6.06 3.98 -367.79 -1.46 -7.53 16 3 C 0.13 2.54 9.10 84.28 0.77 3.30 16 4 C -0.28 -9.10 5.23 -20.14 -0.11 -9.21 16 5 C 0.57 24.20 7.46 86.65 0.65 24.85 16 6 O -0.58 -30.53 15.96 -4.05 -0.06 -30.59 16 7 N -0.60 -23.86 2.97 -822.80 -2.45 -26.31 16 8 C 0.10 2.64 5.47 86.36 0.47 3.11 16 9 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16 10 C -0.10 -3.92 5.11 30.62 0.16 -3.76 16 11 C 0.04 1.87 2.25 -11.46 -0.03 1.85 16 12 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 13 C -0.53 -29.42 8.57 25.60 0.22 -29.20 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.01 0.58 5.30 84.66 0.45 1.03 16 16 N -0.91 -56.42 11.39 21.45 0.24 -56.17 16 17 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 21 C 0.13 6.35 5.41 86.36 0.47 6.81 16 22 C 0.10 3.16 7.75 85.66 0.66 3.83 16 23 Br 0.03 1.11 33.42 -20.37 -0.68 0.43 16 24 N -0.28 -7.83 12.50 -52.20 -0.65 -8.49 16 25 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 26 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.24 2.29 7.31 -2.91 -0.02 2.26 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 2.08 4.79 -2.38 -0.01 2.06 16 31 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.08 4.57 5.11 -2.39 -0.01 4.55 16 37 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -82.60 324.90 3.41 -79.19 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.09 Total: 1.92 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 5.36 Total: 0.98 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -4.32 Total: -98.49 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 35 Polarization: 1.11 SS G_CDS: -0.68 Total: 0.43 kcal Total: -82.60 3.41 -79.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898580047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.542 kcal (2) G-P(sol) polarization free energy of solvation -82.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds