Wall clock time and date at job start Sat Apr 11 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47268 * 2 1 4 4 C 1.50701 * 109.47099 * 240.00644 * 2 1 3 5 5 H 1.07995 * 120.00388 * 240.00301 * 4 2 1 6 6 C 1.37882 * 120.00202 * 59.99744 * 4 2 1 7 7 N 1.31517 * 119.99866 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00292 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46983 * 90.00029 * 8 6 4 10 10 H 1.48500 * 109.46772 * 210.00170 * 8 6 4 11 11 H 1.48502 * 109.46804 * 330.00074 * 8 6 4 12 12 N 1.46499 * 109.47496 * 120.00610 * 2 1 3 13 13 C 1.46500 * 119.99843 * 59.99600 * 12 2 1 14 14 C 1.34771 * 119.99986 * 240.00220 * 12 2 1 15 15 O 1.21280 * 120.00060 * 355.09357 * 14 12 2 16 16 C 1.50705 * 120.00055 * 175.09649 * 14 12 2 17 17 H 1.09002 * 109.46705 * 313.00845 * 16 14 12 18 18 O 1.42893 * 109.47239 * 193.00152 * 16 14 12 19 19 C 1.50706 * 109.47107 * 73.00064 * 16 14 12 20 20 C 1.38258 * 119.99214 * 75.82134 * 19 16 14 21 21 C 1.38222 * 120.01654 * 179.72409 * 20 19 16 22 22 C 1.38240 * 120.00917 * 0.55408 * 21 20 19 23 23 C 1.38303 * 119.98954 * 359.72268 * 22 21 20 24 24 Br 1.89102 * 120.00588 * 180.02562 * 23 22 21 25 25 C 1.38196 * 119.99371 * 256.09903 * 19 16 14 26 26 H 1.08999 * 109.47325 * 59.99466 * 1 2 3 27 27 H 1.09003 * 109.47150 * 299.99284 * 1 2 3 28 28 H 1.09003 * 109.47164 * 179.97438 * 1 2 3 29 29 H 0.96995 * 120.00065 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46872 * 95.20174 * 13 12 2 31 31 H 1.08995 * 109.47125 * 215.20468 * 13 12 2 32 32 H 1.09002 * 109.47393 * 335.20948 * 13 12 2 33 33 H 0.96703 * 114.00262 * 299.99709 * 18 16 14 34 34 H 1.07998 * 119.99176 * 0.02562 * 20 19 16 35 35 H 1.08001 * 119.99790 * 180.27315 * 21 20 19 36 36 H 1.08007 * 120.00546 * 179.70190 * 22 21 20 37 37 H 1.07998 * 120.00855 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9434 0.8305 -2.6034 8 14 2.3212 -1.1200 -4.0082 9 1 1.3426 -2.1613 -4.4122 10 1 2.4864 -0.1408 -5.1124 11 1 3.6292 -1.7579 -3.7125 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0832 15 8 3.1596 1.0963 1.8487 16 6 3.2043 -0.7102 3.3667 17 1 2.3337 -1.1782 3.8262 18 8 3.7510 0.2609 4.2612 19 6 4.2425 -1.7619 3.0714 20 6 5.5451 -1.3890 2.7959 21 6 6.4990 -2.3535 2.5306 22 6 6.1485 -3.6907 2.5294 23 6 4.8443 -4.0638 2.7993 24 35 4.3645 -5.8929 2.7984 25 6 3.8912 -3.0984 3.0704 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7094 1.1621 -3.4843 30 1 2.4611 -2.7358 1.0527 31 1 1.5333 -2.2632 2.4964 32 1 0.7355 -2.3246 0.9064 33 1 4.5304 0.7181 3.9168 34 1 5.8184 -0.3442 2.7928 35 1 7.5174 -2.0621 2.3198 36 1 6.8928 -4.4440 2.3173 37 1 2.8726 -3.3893 3.2808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568293.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:13 Heat of formation + Delta-G solvation = -71.224563 kcal Electronic energy + Delta-G solvation = -22229.309380 eV Core-core repulsion = 18824.322126 eV Total energy + Delta-G solvation = -3404.987254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62704 -39.91414 -37.87128 -36.86175 -34.93952 -33.38498 -32.90624 -31.25046 -30.23884 -28.23015 -27.53144 -27.22750 -23.73987 -23.49722 -22.32643 -20.40952 -18.79868 -18.63140 -18.16358 -17.63329 -16.92058 -16.76208 -16.26054 -15.91734 -15.44371 -14.93131 -14.86641 -14.52701 -14.37467 -14.16420 -14.07647 -13.52303 -13.30665 -13.10952 -12.99667 -12.83037 -12.69460 -12.59828 -12.22625 -12.19946 -12.15890 -12.01120 -11.73003 -11.26739 -11.19570 -10.68003 -10.52251 -9.86718 -9.69488 -9.39822 -8.16047 -6.32130 0.01372 0.18289 0.59536 1.39285 1.40699 1.50182 1.61503 2.19271 2.42146 2.52720 3.11928 3.33696 3.39448 3.61269 3.71065 4.00463 4.07834 4.18929 4.34434 4.39338 4.60830 4.64366 4.73305 4.82085 4.87488 4.97835 5.03989 5.10532 5.23648 5.35214 5.43331 5.57032 5.63942 5.71990 5.99295 6.14211 6.38931 6.73739 6.74810 7.21969 7.41228 8.88192 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.011305 B = 0.004512 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.215612 B = 6204.662569 C = 7469.383759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.010 0.990 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.588 5.588 13 C 0.079 3.921 14 C 0.472 3.528 15 O -0.593 6.593 16 C 0.149 3.851 17 H 0.151 0.849 18 O -0.539 6.539 19 C -0.118 4.118 20 C -0.102 4.102 21 C -0.110 4.110 22 C -0.088 4.088 23 C -0.099 4.099 24 Br -0.042 7.042 25 C -0.078 4.078 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.389 0.611 34 H 0.130 0.870 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.362 -15.136 13.445 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.028 0.972 4 C -0.573 4.573 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.319 5.319 13 C -0.064 4.064 14 C 0.260 3.740 15 O -0.475 6.475 16 C 0.086 3.914 17 H 0.168 0.832 18 O -0.345 6.345 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.108 4.108 23 C -0.178 4.178 24 Br 0.044 6.956 25 C -0.098 4.098 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.239 0.761 34 H 0.148 0.852 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.779 -15.336 13.556 21.897 hybrid contribution 0.635 0.697 -1.537 1.803 sum 8.414 -14.639 12.018 20.726 Atomic orbital electron populations 1.21903 0.96929 1.00327 1.00148 1.18577 0.91704 0.92194 0.81636 0.97224 1.21503 1.31818 1.12867 0.91106 0.92496 1.25686 0.95108 0.95599 1.01865 1.70010 1.37302 1.23751 1.24418 0.85526 0.78853 0.78355 0.78732 1.19256 1.21061 1.19720 1.48207 1.48408 1.13066 1.22213 1.22066 1.01788 0.80531 1.01976 1.21926 0.78773 0.86559 0.86724 1.90635 1.57206 1.21167 1.78466 1.20678 0.96358 0.86947 0.87400 0.83206 1.86549 1.50306 1.55214 1.42472 1.20120 0.95154 0.94067 1.02593 1.21296 0.92842 1.00982 0.96959 1.21410 1.00787 0.91844 0.98784 1.21460 0.94739 0.97386 0.97179 1.21867 0.96744 0.91201 1.08014 1.96728 1.93109 1.08008 1.97805 1.21167 1.00120 0.90718 0.97756 0.91311 0.95883 0.93150 0.92623 0.92650 0.89084 0.90462 0.76071 0.85166 0.82398 0.82889 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.96 71.98 0.64 -5.75 16 2 C 0.26 13.43 2.62 44.24 0.12 13.54 16 3 H 0.01 0.60 6.91 -2.39 -0.02 0.59 16 4 C -0.53 -28.89 8.37 25.60 0.21 -28.67 16 5 H 0.06 3.03 7.65 -2.91 -0.02 3.00 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 8 Si 0.96 42.99 29.54 68.60 2.03 45.01 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 N -0.59 -24.29 2.75 -826.82 -2.28 -26.56 16 13 C 0.08 2.41 7.95 127.77 1.02 3.43 16 14 C 0.47 18.99 6.95 87.66 0.61 19.60 16 15 O -0.59 -29.30 15.64 15.68 0.25 -29.06 16 16 C 0.15 4.27 2.92 29.11 0.09 4.36 16 17 H 0.15 3.51 6.68 -2.39 -0.02 3.49 16 18 O -0.54 -15.64 12.95 -130.27 -1.69 -17.32 16 19 C -0.12 -2.97 4.57 -19.87 -0.09 -3.07 16 20 C -0.10 -2.47 9.26 22.27 0.21 -2.26 16 21 C -0.11 -2.18 10.05 22.27 0.22 -1.95 16 22 C -0.09 -1.70 9.79 22.29 0.22 -1.48 16 23 C -0.10 -2.08 6.22 22.31 0.14 -1.94 16 24 Br -0.04 -0.79 33.70 -20.37 -0.69 -1.48 16 25 C -0.08 -1.72 7.17 22.28 0.16 -1.56 16 26 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 2.15 6.67 -2.39 -0.02 2.13 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.05 1.69 7.03 -2.39 -0.02 1.67 16 31 H 0.09 2.01 4.84 -2.39 -0.01 1.99 16 32 H 0.08 2.41 6.44 -2.39 -0.02 2.40 16 33 H 0.39 10.03 7.29 -74.06 -0.54 9.49 16 34 H 0.13 3.01 6.96 -2.91 -0.02 2.99 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.15 2.76 6.44 -2.91 -0.02 2.74 16 Total: -1.00 -69.21 322.91 2.43 -66.77 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.58 Total: 19.23 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 3.99 Total: -4.36 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.03 Total: -78.80 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -1.44 Total: -46.38 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.69 Total: -1.48 kcal Total: -69.21 2.43 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568293.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.451 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds