Wall clock time and date at job start Sat Apr 11 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47029 * 2 1 4 4 C 1.50705 * 109.47308 * 119.99771 * 2 1 3 5 5 H 1.07997 * 120.00389 * 120.00050 * 4 2 1 6 6 C 1.37875 * 119.99605 * 300.00467 * 4 2 1 7 7 N 1.31517 * 119.99818 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00411 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46849 * 90.00197 * 8 6 4 10 10 H 1.48499 * 109.47387 * 210.00382 * 8 6 4 11 11 H 1.48498 * 109.46774 * 330.00289 * 8 6 4 12 12 N 1.46499 * 109.47420 * 239.99499 * 2 1 3 13 13 C 1.46494 * 120.00291 * 300.00369 * 12 2 1 14 14 C 1.34774 * 119.99851 * 119.99988 * 12 2 1 15 15 O 1.21287 * 120.00108 * 5.36273 * 14 12 2 16 16 C 1.50703 * 120.00353 * 185.36978 * 14 12 2 17 17 H 1.09007 * 109.46666 * 320.36610 * 16 14 12 18 18 O 1.42896 * 109.47528 * 200.36570 * 16 14 12 19 19 C 1.50703 * 109.47278 * 80.35880 * 16 14 12 20 20 C 1.38263 * 119.99018 * 72.61013 * 19 16 14 21 21 C 1.38220 * 120.01705 * 179.72370 * 20 19 16 22 22 C 1.38240 * 120.00959 * 0.54789 * 21 20 19 23 23 C 1.38305 * 119.99062 * 359.72723 * 22 21 20 24 24 Br 1.89101 * 120.01060 * 180.02562 * 23 22 21 25 25 C 1.38194 * 119.99579 * 252.88121 * 19 16 14 26 26 H 1.08994 * 109.47567 * 299.99902 * 1 2 3 27 27 H 1.08994 * 109.47140 * 60.00670 * 1 2 3 28 28 H 1.09007 * 109.47072 * 180.02562 * 1 2 3 29 29 H 0.96998 * 120.00002 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47400 * 265.40217 * 13 12 2 31 31 H 1.09000 * 109.47690 * 145.40403 * 13 12 2 32 32 H 1.09006 * 109.47261 * 25.39820 * 13 12 2 33 33 H 0.96697 * 113.99734 * 300.00086 * 18 16 14 34 34 H 1.07997 * 119.99192 * 0.02562 * 20 19 16 35 35 H 1.08003 * 119.99425 * 180.26993 * 21 20 19 36 36 H 1.07997 * 120.00934 * 179.70173 * 22 21 20 37 37 H 1.07999 * 120.00375 * 0.02623 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8589 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9955 3.9069 11 1 0.8490 2.1773 1.4922 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0832 15 8 3.1666 1.0933 -1.8449 16 6 3.1957 -0.7062 -3.3715 17 1 3.4255 -1.7543 -3.1793 18 8 4.3501 -0.0558 -3.9066 19 6 2.0629 -0.6137 -4.3612 20 6 1.7647 0.5968 -4.9591 21 6 0.7295 0.6810 -5.8712 22 6 -0.0152 -0.4426 -6.1774 23 6 0.2791 -1.6524 -5.5753 24 35 -0.7388 -3.1899 -5.9944 25 6 1.3190 -1.7375 -4.6667 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9033 -0.5277 4.4376 30 1 2.4563 -2.7361 -1.0433 31 1 1.5440 -2.2656 -2.4974 32 1 0.7299 -2.3217 -0.9154 33 1 4.2180 0.8819 -4.1021 34 1 2.3438 1.4757 -4.7171 35 1 0.4997 1.6258 -6.3412 36 1 -0.8271 -0.3757 -6.8865 37 1 1.5490 -2.6819 -4.1960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:16 Heat of formation + Delta-G solvation = -64.843517 kcal Electronic energy + Delta-G solvation = -22147.584740 eV Core-core repulsion = 18742.874189 eV Total energy + Delta-G solvation = -3404.710551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68427 -39.99677 -37.96290 -36.94723 -34.89907 -33.44735 -33.09338 -31.98789 -30.25460 -28.23849 -27.68886 -27.13257 -23.82768 -23.57124 -22.35645 -20.37505 -19.05741 -18.82439 -18.26258 -17.78844 -16.96833 -16.76604 -16.37405 -15.97309 -15.47380 -15.08494 -15.00654 -14.65140 -14.52187 -14.27098 -14.13220 -13.92840 -13.69506 -13.31458 -13.20496 -13.00438 -12.79213 -12.60950 -12.24351 -12.09923 -12.02364 -11.75050 -11.60567 -11.38335 -11.27537 -10.82048 -10.69729 -9.92064 -9.71962 -9.48256 -8.36523 -6.41556 -0.01243 0.14540 0.58544 1.24519 1.34119 1.42272 1.52129 2.09341 2.25850 2.49502 2.98557 3.32621 3.36286 3.55124 3.70498 3.96968 4.06409 4.18334 4.28477 4.35420 4.41006 4.51758 4.55733 4.61321 4.66836 4.80781 4.89576 5.02025 5.09722 5.21956 5.27250 5.34070 5.43942 5.64324 5.70145 6.14741 6.39218 6.59082 6.64311 7.10461 7.26819 8.79605 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.015291 B = 0.003767 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.645875 B = 7431.822790 C = 8230.276026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.231 3.769 3 H 0.032 0.968 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.939 5.939 8 Si 0.941 3.059 9 H -0.253 1.253 10 H -0.296 1.296 11 H -0.261 1.261 12 N -0.585 5.585 13 C 0.072 3.928 14 C 0.478 3.522 15 O -0.586 6.586 16 C 0.147 3.853 17 H 0.142 0.858 18 O -0.540 6.540 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.105 4.105 22 C -0.085 4.085 23 C -0.097 4.097 24 Br -0.042 7.042 25 C -0.082 4.082 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.269 0.731 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.390 0.610 34 H 0.133 0.867 35 H 0.161 0.839 36 H 0.155 0.845 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 -2.996 -24.996 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.128 3.872 3 H 0.050 0.950 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.768 3.232 9 H -0.178 1.178 10 H -0.223 1.223 11 H -0.186 1.186 12 N -0.316 5.316 13 C -0.070 4.070 14 C 0.266 3.734 15 O -0.467 6.467 16 C 0.084 3.916 17 H 0.160 0.840 18 O -0.347 6.347 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.105 4.105 23 C -0.176 4.176 24 Br 0.043 6.957 25 C -0.102 4.102 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.241 0.759 34 H 0.151 0.849 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.224 -3.614 -24.772 26.350 hybrid contribution -0.085 1.359 1.077 1.736 sum -8.309 -2.255 -23.694 25.210 Atomic orbital electron populations 1.22309 0.96430 1.02377 0.99952 1.18997 0.91818 0.93418 0.82988 0.94992 1.21352 1.31831 1.13176 0.90247 0.93749 1.25652 0.97139 0.99470 0.95294 1.70003 1.47010 1.42172 0.98619 0.85981 0.79899 0.80155 0.77175 1.17800 1.22308 1.18624 1.47899 1.48694 1.13273 1.21701 1.22076 1.02200 0.80321 1.02426 1.21893 0.78114 0.86678 0.86732 1.90626 1.56052 1.21138 1.78913 1.20667 0.85274 0.98668 0.86973 0.84028 1.86583 1.34728 1.29243 1.84098 1.20060 0.97800 0.95059 0.98894 1.21321 0.97709 0.96973 0.95779 1.21436 0.94271 0.99677 0.97010 1.21487 0.99670 0.90646 0.98671 1.21874 0.99244 0.93910 1.02615 1.96751 1.70314 1.35124 1.93498 1.21109 0.93822 0.98932 0.96293 0.93863 0.92553 0.91016 0.92233 0.92657 0.88909 0.90093 0.75888 0.84919 0.82098 0.82695 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.18 8.66 71.98 0.62 -5.56 16 2 C 0.23 10.96 2.22 44.25 0.10 11.06 16 3 H 0.03 1.72 5.97 -2.39 -0.01 1.70 16 4 C -0.53 -29.57 8.95 25.60 0.23 -29.34 16 5 H 0.04 2.73 7.89 -2.91 -0.02 2.70 16 6 C 0.02 1.34 5.45 84.65 0.46 1.80 16 7 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 8 Si 0.94 44.71 24.37 68.60 1.67 46.38 16 9 H -0.25 -10.97 6.87 99.48 0.68 -10.28 16 10 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 11 H -0.26 -12.22 6.53 99.48 0.65 -11.57 16 12 N -0.59 -23.10 2.75 -826.79 -2.28 -25.37 16 13 C 0.07 2.18 9.08 127.77 1.16 3.34 16 14 C 0.48 18.19 6.80 87.66 0.60 18.79 16 15 O -0.59 -26.81 15.68 15.15 0.24 -26.57 16 16 C 0.15 4.07 2.89 29.10 0.08 4.15 16 17 H 0.14 3.44 6.83 -2.38 -0.02 3.42 16 18 O -0.54 -15.24 13.04 -130.78 -1.71 -16.94 16 19 C -0.12 -2.64 4.78 -19.87 -0.09 -2.74 16 20 C -0.10 -2.03 9.20 22.27 0.20 -1.83 16 21 C -0.11 -1.67 10.05 22.27 0.22 -1.44 16 22 C -0.09 -1.34 9.79 22.29 0.22 -1.12 16 23 C -0.10 -1.76 6.22 22.31 0.14 -1.62 16 24 Br -0.04 -0.70 33.70 -20.37 -0.69 -1.39 16 25 C -0.08 -1.62 8.07 22.29 0.18 -1.44 16 26 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 2.66 6.66 -2.38 -0.02 2.65 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 2.09 3.36 -2.39 -0.01 2.08 16 32 H 0.08 2.47 6.44 -2.38 -0.02 2.45 16 33 H 0.39 9.38 7.35 -74.06 -0.54 8.84 16 34 H 0.13 2.61 7.11 -2.91 -0.02 2.59 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.15 2.52 6.57 -2.91 -0.02 2.50 16 Total: -1.00 -72.12 318.33 2.16 -69.96 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.50 Total: 17.17 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.12 Total: -5.95 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -1.98 Total: -82.65 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.47 Total: -43.52 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.67 Total: 46.38 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -0.69 Total: -1.39 kcal Total: -72.12 2.16 -69.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.112 kcal (2) G-P(sol) polarization free energy of solvation -72.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds