Wall clock time and date at job start Sat Apr 11 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48493 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47046 * 300.00539 * 3 2 1 6 6 H 1.48498 * 109.46756 * 60.00195 * 3 2 1 7 7 C 1.37875 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47082 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00063 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99973 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46564 * 325.02055 * 14 13 11 16 16 C 1.53147 * 109.46594 * 205.02847 * 14 13 11 17 17 C 1.53401 * 109.24789 * 170.48867 * 16 14 13 18 18 C 1.51040 * 108.21112 * 48.81869 * 17 16 14 19 19 N 1.30069 * 127.39485 * 164.01356 * 18 17 16 20 20 C 1.34324 * 109.22322 * 180.09619 * 19 18 17 21 21 C 1.34948 * 108.06627 * 359.97438 * 20 19 18 22 22 Br 1.89106 * 126.65690 * 179.97438 * 21 20 19 23 23 N 1.35509 * 123.97159 * 344.07804 * 18 17 16 24 24 C 1.46479 * 124.81640 * 359.84274 * 23 18 17 25 25 H 0.97009 * 120.00309 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47154 * 59.99884 * 9 7 2 27 27 H 1.09002 * 109.46508 * 300.00064 * 9 7 2 28 28 H 1.08999 * 109.47629 * 59.99675 * 10 9 7 29 29 H 1.09004 * 109.46766 * 299.99617 * 10 9 7 30 30 H 0.97002 * 120.00301 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.51264 * 290.41568 * 16 14 13 32 32 H 1.08999 * 109.50925 * 50.51059 * 16 14 13 33 33 H 1.09001 * 109.70527 * 289.14723 * 17 16 14 34 34 H 1.08996 * 109.72391 * 168.50693 * 17 16 14 35 35 H 1.08004 * 125.96113 * 179.71860 * 20 19 18 36 36 H 1.08999 * 109.57844 * 102.67465 * 24 23 18 37 37 H 1.08999 * 109.58488 * 223.09511 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0018 14 6 1.4333 -7.4030 -0.0019 15 1 0.5227 -7.2968 0.5877 16 6 2.3115 -8.4994 0.6083 17 6 1.4669 -9.7614 0.8255 18 6 0.7107 -10.0486 -0.4500 19 7 0.1193 -11.1575 -0.7851 20 6 -0.4385 -11.0122 -1.9983 21 6 -0.1808 -9.7599 -2.4301 22 35 -0.7218 -8.9990 -4.0747 23 7 0.5456 -9.1503 -1.4510 24 6 1.0684 -7.7819 -1.4414 25 1 -0.4851 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8719 -3.6042 -0.8906 30 1 3.1358 -6.1343 -0.0015 31 1 3.1353 -8.7249 -0.0688 32 1 2.7089 -8.1576 1.5640 33 1 0.7630 -9.5967 1.6412 34 1 2.1174 -10.6026 1.0647 35 1 -0.9927 -11.7672 -2.5362 36 1 1.9568 -7.7260 -2.0704 37 1 0.3080 -7.0977 -1.8178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900917951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:20 Heat of formation + Delta-G solvation = 11.399332 kcal Electronic energy + Delta-G solvation = -21092.153078 eV Core-core repulsion = 17723.041415 eV Total energy + Delta-G solvation = -3369.111662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.69359 -39.63224 -37.06281 -33.85536 -33.54412 -33.52330 -31.66542 -31.10827 -28.97040 -28.16412 -25.83294 -24.48803 -22.64000 -21.80282 -21.28086 -20.03608 -19.29939 -17.36561 -17.00301 -16.58746 -15.80036 -15.71912 -15.25263 -14.66205 -14.50688 -14.38636 -14.34260 -14.01344 -13.58849 -13.23417 -12.65363 -12.49015 -12.23254 -12.14132 -11.60767 -11.55103 -11.24852 -11.19023 -11.00876 -10.99872 -10.63509 -10.22717 -10.06234 -9.89810 -9.78216 -9.34572 -9.19209 -9.11684 -8.56858 -8.38743 -6.02299 -4.07158 1.01897 1.50520 2.37963 2.71774 3.00370 3.23852 3.28373 3.36094 3.38859 3.88053 4.12984 4.23563 4.41420 4.48192 4.71784 4.86407 4.91097 5.09852 5.13583 5.21187 5.32981 5.39024 5.46653 5.53102 5.73139 5.81266 6.09479 6.10912 6.20397 6.36123 6.71554 6.76873 7.61055 7.64589 7.67410 7.76617 7.99175 8.29899 8.54585 9.01145 9.57009 11.08543 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.002699 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.003459 B =10370.568698 C =11672.481967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.527 6.527 13 N -0.737 5.737 14 C 0.136 3.864 15 H 0.100 0.900 16 C -0.134 4.134 17 C -0.030 4.030 18 C 0.228 3.772 19 N -0.482 5.482 20 C 0.021 3.979 21 C -0.036 4.036 22 Br 0.018 6.982 23 N -0.434 5.434 24 C 0.085 3.915 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.403 0.597 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.180 0.820 36 H 0.092 0.908 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 -23.601 -4.402 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.401 6.401 13 N -0.391 5.391 14 C 0.030 3.970 15 H 0.118 0.882 16 C -0.173 4.173 17 C -0.069 4.069 18 C -0.036 4.036 19 N -0.201 5.201 20 C -0.131 4.131 21 C -0.230 4.230 22 Br 0.101 6.899 23 N -0.118 5.118 24 C -0.038 4.038 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.237 0.763 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.197 0.803 36 H 0.110 0.890 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.317 -23.695 -4.541 24.353 hybrid contribution 0.934 1.549 -0.422 1.858 sum 4.252 -22.146 -4.963 23.090 Atomic orbital electron populations 1.70003 1.06068 1.26568 1.50082 1.25028 0.94829 0.99290 0.95229 0.86534 0.79991 0.83792 0.77639 1.19731 1.20995 1.20975 1.21232 0.92954 0.90932 1.51531 0.92525 1.18914 0.93152 0.89394 0.98665 1.21891 1.00784 0.91485 1.02730 1.21766 0.88768 0.85630 0.73878 1.90702 1.14436 1.87427 1.47582 1.46199 1.10167 1.04489 1.78282 1.20980 0.97736 0.84769 0.93551 0.88163 1.22016 0.98317 0.93723 1.03218 1.20215 0.97662 0.98468 0.90583 1.23430 1.01883 0.85320 0.92925 1.70204 1.13776 1.23000 1.13121 1.22360 1.03482 0.94000 0.93259 1.22861 1.09719 0.96888 0.93486 1.96789 1.89358 1.84005 1.19796 1.45239 1.39659 1.12575 1.14318 1.22647 1.01199 0.79615 1.00371 0.92941 0.95823 0.95786 0.89944 0.90027 0.76255 0.90396 0.88605 0.88357 0.87691 0.80279 0.89017 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.93 4.26 -27.89 -0.12 0.82 16 10 C -0.13 -2.39 5.64 -27.89 -0.16 -2.55 16 11 C 0.51 8.69 7.79 -10.98 -0.09 8.60 16 12 O -0.53 -11.41 15.64 5.55 0.09 -11.32 16 13 N -0.74 -8.34 5.08 -53.59 -0.27 -8.61 16 14 C 0.14 1.42 2.47 -67.71 -0.17 1.25 16 15 H 0.10 1.30 7.55 -51.93 -0.39 0.91 16 16 C -0.13 -0.92 5.43 -26.45 -0.14 -1.06 16 17 C -0.03 -0.23 6.33 -27.51 -0.17 -0.40 16 18 C 0.23 2.57 7.65 -155.18 -1.19 1.38 16 19 N -0.48 -6.15 11.24 -10.57 -0.12 -6.27 16 20 C 0.02 0.25 11.85 -17.63 -0.21 0.04 16 21 C -0.04 -0.43 7.41 -16.73 -0.12 -0.56 16 22 Br 0.02 0.19 33.91 -68.01 -2.31 -2.11 16 23 N -0.43 -5.09 3.14 -111.82 -0.35 -5.45 16 24 C 0.09 0.95 6.38 -3.91 -0.02 0.93 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.40 3.24 8.60 -40.82 -0.35 2.89 16 31 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.18 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -34.42 334.52 -9.94 -44.35 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.93 Total: -0.85 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.80 Total: -4.82 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.01 Total: -46.49 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -2.31 Total: -2.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.42 -9.94 -44.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900917951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.752 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds