Wall clock time and date at job start Sat Apr 11 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48493 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47046 * 300.00539 * 3 2 1 6 6 H 1.48498 * 109.46756 * 60.00195 * 3 2 1 7 7 C 1.37875 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47082 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00063 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99973 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46564 * 325.02055 * 14 13 11 16 16 C 1.53147 * 109.46594 * 205.02847 * 14 13 11 17 17 C 1.53401 * 109.24789 * 170.48867 * 16 14 13 18 18 C 1.51040 * 108.21112 * 48.81869 * 17 16 14 19 19 N 1.30069 * 127.39485 * 164.01356 * 18 17 16 20 20 C 1.34324 * 109.22322 * 180.09619 * 19 18 17 21 21 C 1.34948 * 108.06627 * 359.97438 * 20 19 18 22 22 Br 1.89106 * 126.65690 * 179.97438 * 21 20 19 23 23 N 1.35509 * 123.97159 * 344.07804 * 18 17 16 24 24 C 1.46479 * 124.81640 * 359.84274 * 23 18 17 25 25 H 0.97009 * 120.00309 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47154 * 59.99884 * 9 7 2 27 27 H 1.09002 * 109.46508 * 300.00064 * 9 7 2 28 28 H 1.08999 * 109.47629 * 59.99675 * 10 9 7 29 29 H 1.09004 * 109.46766 * 299.99617 * 10 9 7 30 30 H 0.97002 * 120.00301 * 0.02562 * 13 11 10 31 31 H 1.08996 * 109.51264 * 290.41568 * 16 14 13 32 32 H 1.08999 * 109.50925 * 50.51059 * 16 14 13 33 33 H 1.09001 * 109.70527 * 289.14723 * 17 16 14 34 34 H 1.08996 * 109.72391 * 168.50693 * 17 16 14 35 35 H 1.08004 * 125.96113 * 179.71860 * 20 19 18 36 36 H 1.08999 * 109.57844 * 102.67465 * 24 23 18 37 37 H 1.08999 * 109.58488 * 223.09511 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0018 14 6 1.4333 -7.4030 -0.0019 15 1 0.5227 -7.2968 0.5877 16 6 2.3115 -8.4994 0.6083 17 6 1.4669 -9.7614 0.8255 18 6 0.7107 -10.0486 -0.4500 19 7 0.1193 -11.1575 -0.7851 20 6 -0.4385 -11.0122 -1.9983 21 6 -0.1808 -9.7599 -2.4301 22 35 -0.7218 -8.9990 -4.0747 23 7 0.5456 -9.1503 -1.4510 24 6 1.0684 -7.7819 -1.4414 25 1 -0.4851 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8719 -3.6042 -0.8906 30 1 3.1358 -6.1343 -0.0015 31 1 3.1353 -8.7249 -0.0688 32 1 2.7089 -8.1576 1.5640 33 1 0.7630 -9.5967 1.6412 34 1 2.1174 -10.6026 1.0647 35 1 -0.9927 -11.7672 -2.5362 36 1 1.9568 -7.7260 -2.0704 37 1 0.3080 -7.0977 -1.8178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900917951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:19 Heat of formation + Delta-G solvation = -11.798367 kcal Electronic energy + Delta-G solvation = -21093.159005 eV Core-core repulsion = 17723.041415 eV Total energy + Delta-G solvation = -3370.117590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.55489 -40.90928 -38.08267 -35.56209 -34.78565 -34.49733 -32.97702 -32.47886 -30.03337 -29.01326 -27.62051 -25.42498 -23.88362 -22.97644 -22.37679 -21.31826 -20.24378 -18.80589 -18.23484 -17.61257 -17.37506 -16.73321 -16.46958 -16.40423 -15.65152 -15.30090 -15.14975 -14.90745 -14.81080 -14.42852 -14.21780 -14.02123 -13.25046 -13.18224 -13.06121 -12.85022 -12.47352 -12.39202 -12.28508 -11.93589 -11.91575 -11.88080 -11.63273 -11.28375 -11.12807 -10.84454 -10.76173 -10.58311 -10.30029 -9.43446 -8.18272 -6.31870 0.14715 0.63165 1.42412 1.43427 1.45367 1.56677 1.67774 1.84426 2.19578 2.43895 3.15420 3.16195 3.28079 3.46997 3.71726 3.88949 4.04441 4.12833 4.23007 4.31301 4.33532 4.49533 4.58008 4.62157 4.80754 4.93402 5.00359 5.04778 5.11372 5.29819 5.35788 5.51431 5.64217 5.86035 5.88260 6.17649 6.54653 6.77167 6.87572 7.28699 7.38798 8.94367 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.002699 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.003459 B =10370.568698 C =11672.481967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.251 1.251 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.040 3.960 10 C -0.119 4.119 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.706 5.706 14 C 0.138 3.862 15 H 0.073 0.927 16 C -0.120 4.120 17 C -0.029 4.029 18 C 0.226 3.774 19 N -0.508 5.508 20 C 0.016 3.984 21 C -0.055 4.055 22 Br 0.021 6.979 23 N -0.441 5.441 24 C 0.089 3.911 25 H 0.262 0.738 26 H -0.019 1.019 27 H -0.018 1.018 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.425 0.575 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.197 0.803 36 H 0.110 0.890 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 -24.318 -3.870 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.174 1.174 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.002 3.998 10 C -0.158 4.158 11 C 0.304 3.696 12 O -0.463 6.463 13 N -0.361 5.361 14 C 0.032 3.968 15 H 0.091 0.909 16 C -0.158 4.158 17 C -0.068 4.068 18 C -0.038 4.038 19 N -0.227 5.227 20 C -0.136 4.136 21 C -0.248 4.248 22 Br 0.104 6.896 23 N -0.125 5.125 24 C -0.034 4.034 25 H 0.070 0.930 26 H -0.001 1.001 27 H 0.000 1.000 28 H 0.128 0.872 29 H 0.126 0.874 30 H 0.264 0.736 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.214 0.786 36 H 0.128 0.872 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.717 -24.463 -4.013 25.684 hybrid contribution -0.151 1.694 -0.600 1.803 sum 6.566 -22.769 -4.613 24.142 Atomic orbital electron populations 1.70182 1.08309 1.27665 1.51684 1.26124 0.95682 1.03932 0.94788 0.85307 0.79447 0.78274 0.77424 1.17416 1.20883 1.20777 1.21758 0.94061 0.91568 1.50384 0.90426 1.18706 0.93795 0.92599 0.94672 1.21644 0.99253 0.89653 1.05278 1.21434 0.87814 0.86804 0.73556 1.90698 1.16824 1.88238 1.50526 1.45759 1.11136 1.03284 1.75901 1.21045 0.97642 0.85117 0.93042 0.90912 1.21998 0.97684 0.91581 1.04567 1.20444 0.97940 0.99615 0.88822 1.24214 1.01193 0.84751 0.93592 1.70224 1.14828 1.23956 1.13653 1.22737 1.03248 0.94396 0.93233 1.23062 1.10422 0.97270 0.94046 1.96776 1.89388 1.83982 1.19461 1.45320 1.39941 1.12632 1.14574 1.22555 1.00840 0.79034 1.01005 0.92956 1.00076 0.99952 0.87210 0.87435 0.73601 0.88308 0.86174 0.87850 0.85211 0.78563 0.87239 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.29 21.45 0.28 -58.44 16 2 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.04 2.13 4.26 29.85 0.13 2.25 16 10 C -0.12 -4.26 5.64 29.85 0.17 -4.09 16 11 C 0.52 17.35 7.79 87.66 0.68 18.03 16 12 O -0.58 -26.43 15.64 -3.05 -0.05 -26.48 16 13 N -0.71 -14.40 5.08 -441.86 -2.24 -16.64 16 14 C 0.14 2.65 2.47 45.13 0.11 2.77 16 15 H 0.07 1.88 7.55 -2.39 -0.02 1.86 16 16 C -0.12 -1.19 5.43 30.78 0.17 -1.02 16 17 C -0.03 -0.36 6.33 30.09 0.19 -0.16 16 18 C 0.23 4.76 7.65 138.21 1.06 5.82 16 19 N -0.51 -12.42 11.24 -187.37 -2.11 -14.53 16 20 C 0.02 0.36 11.85 83.55 0.99 1.35 16 21 C -0.06 -1.31 7.41 83.24 0.62 -0.69 16 22 Br 0.02 0.46 33.91 -20.37 -0.69 -0.23 16 23 N -0.44 -10.03 3.14 -507.68 -1.59 -11.62 16 24 C 0.09 1.93 6.38 86.47 0.55 2.49 16 25 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 26 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 27 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 28 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 30 H 0.43 5.08 8.60 -92.71 -0.80 4.29 16 31 H 0.10 0.66 8.12 -2.39 -0.02 0.64 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -79.68 334.52 1.28 -78.40 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.29 Total: 6.81 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.36 Total: -2.68 kcal Atomic # 7 Polarization: -95.57 SS G_CDS: -5.66 Total: -101.23 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 35 Polarization: 0.46 SS G_CDS: -0.69 Total: -0.23 kcal Total: -79.68 1.28 -78.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900917951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.603 kcal (2) G-P(sol) polarization free energy of solvation -79.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds