Wall clock time and date at job start Sat Apr 11 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35229 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87057 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97443 * 180.26317 * 4 3 2 6 6 C 1.34775 * 120.00331 * 359.71943 * 5 4 3 7 7 O 1.21288 * 119.99525 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00025 * 179.97438 * 6 5 4 9 9 C 1.52998 * 115.55295 * 34.33405 * 8 6 5 10 10 C 1.53001 * 117.49384 * 179.97438 * 8 6 5 11 11 C 1.53003 * 117.49827 * 248.61972 * 8 6 5 12 12 H 1.09000 * 117.49740 * 0.02562 * 11 8 6 13 13 Br 1.96595 * 117.49531 * 145.02296 * 11 8 6 14 14 N 1.31224 * 108.05071 * 0.02562 * 4 3 2 15 15 N 1.34974 * 126.06743 * 179.97438 * 2 1 3 16 16 C 1.46495 * 125.97445 * 0.02562 * 15 2 1 17 17 C 1.50704 * 109.46909 * 269.99978 * 16 15 2 18 18 H 1.07995 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99711 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00375 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99514 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47148 * 89.99715 * 21 19 17 23 23 H 1.48503 * 109.46625 * 209.99994 * 21 19 17 24 24 H 1.48494 * 109.47151 * 329.99533 * 21 19 17 25 25 H 1.08999 * 109.47145 * 270.03765 * 1 2 3 26 26 H 1.09004 * 109.47116 * 30.03740 * 1 2 3 27 27 H 1.09008 * 109.47564 * 150.03754 * 1 2 3 28 28 H 1.08000 * 126.06502 * 0.02562 * 3 2 1 29 29 H 0.97002 * 119.99613 * 179.71754 * 5 4 3 30 30 H 1.09003 * 109.47251 * 85.57347 * 9 8 6 31 31 H 1.08995 * 109.47256 * 205.58063 * 9 8 6 32 32 H 1.08999 * 109.46653 * 325.58121 * 9 8 6 33 33 H 1.08998 * 117.49711 * 214.97482 * 10 8 6 34 34 H 1.08997 * 117.50353 * 0.02562 * 10 8 6 35 35 H 1.09001 * 109.47564 * 29.99927 * 16 15 2 36 36 H 1.09003 * 109.47397 * 150.00509 * 16 15 2 37 37 H 0.96996 * 119.99913 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7734 1.4749 0.0060 6 6 4.6367 2.8157 0.0055 7 8 3.5302 3.3123 0.0009 8 6 5.8586 3.6976 0.0119 9 6 7.0648 3.1598 -0.7605 10 6 5.6370 5.2115 0.0105 11 6 6.1354 4.5121 1.2773 12 1 5.4339 4.4096 2.1052 13 35 8.0141 4.7872 1.7867 14 7 3.6336 -0.6577 0.0004 15 7 2.3016 -1.0910 0.0005 16 6 1.8499 -2.4846 0.0006 17 6 1.6946 -2.9622 1.4215 18 1 1.9110 -2.2946 2.2423 19 6 1.2770 -4.2519 1.6735 20 7 1.0139 -5.0651 0.6740 21 14 1.0837 -4.8436 3.4348 22 1 -0.2994 -4.5693 3.9002 23 1 1.3470 -6.3037 3.4981 24 1 2.0502 -4.1281 4.3062 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8897 -0.5144 27 1 -0.3634 -0.8904 -0.5133 28 1 1.9719 2.1210 0.0004 29 1 5.6583 1.0776 0.0101 30 1 6.9759 3.4360 -1.8112 31 1 7.9795 3.5862 -0.3488 32 1 7.0981 2.0739 -0.6720 33 1 6.3509 5.8241 -0.5400 34 1 4.6075 5.5695 0.0053 35 1 0.8915 -2.5560 -0.5136 36 1 2.5848 -3.1048 -0.5128 37 1 0.7205 -5.9724 0.8514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907190463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:27 Heat of formation + Delta-G solvation = 69.270757 kcal Electronic energy + Delta-G solvation = -21110.470407 eV Core-core repulsion = 17743.868238 eV Total energy + Delta-G solvation = -3366.602169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95497 -39.93944 -37.19351 -34.98635 -33.42450 -31.56645 -30.94914 -30.51305 -28.94472 -26.80890 -26.39668 -24.36969 -22.74199 -22.38138 -20.52209 -19.86017 -18.75619 -17.22423 -16.71652 -16.34456 -15.47540 -15.33412 -14.99085 -14.59521 -14.23021 -14.07859 -13.60457 -13.18663 -13.04111 -12.81593 -12.51443 -12.31968 -12.26064 -11.94174 -11.70484 -11.67532 -11.44046 -11.12767 -10.85797 -10.78364 -10.50105 -10.28722 -10.19157 -10.06429 -9.95389 -9.63753 -9.57080 -8.66665 -7.99988 -7.52245 -6.28030 -4.35682 1.10682 2.03258 2.64484 2.77169 3.15626 3.19744 3.26348 3.31826 3.66857 3.74782 4.00547 4.14093 4.27879 4.40387 4.50733 5.05856 5.06679 5.30407 5.33754 5.35225 5.41881 5.52483 5.66948 5.78920 5.87445 6.07409 6.17998 6.39385 6.46602 6.65103 6.88758 7.01958 7.36880 7.56129 7.64502 7.85857 8.00092 8.12213 8.59353 8.71823 9.30791 10.79367 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002522 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.728267 B =11098.278677 C =11882.999943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.622 5.622 6 C 0.556 3.444 7 O -0.510 6.510 8 C -0.137 4.137 9 C -0.132 4.132 10 C -0.115 4.115 11 C -0.099 4.099 12 H 0.145 0.855 13 Br -0.106 7.106 14 N -0.318 5.318 15 N -0.315 5.315 16 C 0.258 3.742 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.066 3.934 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.411 0.589 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.752 20.885 -1.713 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.008 3.992 5 N -0.269 5.269 6 C 0.340 3.660 7 O -0.384 6.384 8 C -0.142 4.142 9 C -0.189 4.189 10 C -0.154 4.154 11 C -0.195 4.195 12 H 0.163 0.837 13 Br -0.024 7.024 14 N -0.148 5.148 15 N -0.097 5.097 16 C 0.140 3.860 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.176 0.824 29 H 0.248 0.752 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.241 19.963 -1.578 23.471 hybrid contribution -0.421 -0.221 0.935 1.049 sum 11.821 19.743 -0.643 23.020 Atomic orbital electron populations 1.20341 0.87803 1.02881 1.03226 1.21071 0.94954 0.87130 1.00766 1.21218 0.89669 0.99787 1.21454 1.18966 0.87083 0.89630 1.03471 1.42363 1.07786 1.04854 1.71942 1.19197 0.89173 0.81306 0.76305 1.90661 1.25954 1.73918 1.47884 1.21700 0.96917 0.94561 1.00998 1.21666 0.95116 1.01831 1.00312 1.23468 1.04521 0.91583 0.95811 1.25822 0.91026 1.07460 0.95200 0.83737 1.97338 1.15632 1.96782 1.92652 1.77270 0.99988 1.08413 1.29151 1.49016 1.00923 1.07849 1.51930 1.19710 0.96007 0.71239 0.99002 1.21312 1.46880 0.97980 0.91328 0.91755 1.24926 0.94639 0.96042 0.98145 1.69914 1.44856 1.07127 1.31047 0.86351 0.78683 0.77939 0.83711 1.20275 1.20843 1.19688 0.90373 0.90783 0.90798 0.82367 0.75199 0.90532 0.89815 0.91226 0.86432 0.85691 0.92738 0.92955 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.00 0.36 -1.05 16 2 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 3 C -0.29 -5.86 9.52 -39.84 -0.38 -6.24 16 4 C 0.26 5.23 8.11 -154.39 -1.25 3.98 16 5 N -0.62 -9.52 5.35 -11.13 -0.06 -9.58 16 6 C 0.56 7.70 7.36 -10.99 -0.08 7.61 16 7 O -0.51 -8.49 13.39 5.55 0.07 -8.41 16 8 C -0.14 -1.31 2.61 -155.66 -0.41 -1.72 16 9 C -0.13 -1.02 9.66 37.16 0.36 -0.66 16 10 C -0.12 -0.91 9.58 -26.70 -0.26 -1.17 16 11 C -0.10 -0.86 6.68 -26.70 -0.18 -1.04 16 12 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 13 Br -0.11 -0.89 31.94 -68.01 -2.17 -3.06 16 14 N -0.32 -7.26 12.59 31.44 0.40 -6.87 16 15 N -0.31 -7.40 3.59 -58.33 -0.21 -7.61 16 16 C 0.26 6.56 5.99 -5.19 -0.03 6.53 16 17 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 18 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 21 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.25 7.07 -51.92 -0.37 0.88 16 28 H 0.16 3.08 5.92 -52.49 -0.31 2.77 16 29 H 0.41 5.23 7.12 -40.82 -0.29 4.94 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.59 5.79 -51.93 -0.30 0.29 16 32 H 0.07 0.53 6.38 -51.93 -0.33 0.20 16 33 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.12 1.06 7.67 -51.93 -0.40 0.66 16 35 H 0.05 1.37 7.04 -51.93 -0.37 1.00 16 36 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -31.17 334.36 -8.51 -39.68 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.45 Total: 4.73 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.85 Total: -5.74 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.86 Total: -48.22 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -2.17 Total: -3.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.17 -8.51 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907190463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.955 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds