Wall clock time and date at job start Sat Apr 11 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35229 * 126.07045 * 2 1 4 4 C 1.40409 * 107.87057 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97443 * 180.26317 * 4 3 2 6 6 C 1.34775 * 120.00331 * 359.71943 * 5 4 3 7 7 O 1.21288 * 119.99525 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00025 * 179.97438 * 6 5 4 9 9 C 1.52998 * 115.55295 * 34.33405 * 8 6 5 10 10 C 1.53001 * 117.49384 * 179.97438 * 8 6 5 11 11 C 1.53003 * 117.49827 * 248.61972 * 8 6 5 12 12 H 1.09000 * 117.49740 * 0.02562 * 11 8 6 13 13 Br 1.96595 * 117.49531 * 145.02296 * 11 8 6 14 14 N 1.31224 * 108.05071 * 0.02562 * 4 3 2 15 15 N 1.34974 * 126.06743 * 179.97438 * 2 1 3 16 16 C 1.46495 * 125.97445 * 0.02562 * 15 2 1 17 17 C 1.50704 * 109.46909 * 269.99978 * 16 15 2 18 18 H 1.07995 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99711 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00375 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99514 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47148 * 89.99715 * 21 19 17 23 23 H 1.48503 * 109.46625 * 209.99994 * 21 19 17 24 24 H 1.48494 * 109.47151 * 329.99533 * 21 19 17 25 25 H 1.08999 * 109.47145 * 270.03765 * 1 2 3 26 26 H 1.09004 * 109.47116 * 30.03740 * 1 2 3 27 27 H 1.09008 * 109.47564 * 150.03754 * 1 2 3 28 28 H 1.08000 * 126.06502 * 0.02562 * 3 2 1 29 29 H 0.97002 * 119.99613 * 179.71754 * 5 4 3 30 30 H 1.09003 * 109.47251 * 85.57347 * 9 8 6 31 31 H 1.08995 * 109.47256 * 205.58063 * 9 8 6 32 32 H 1.08999 * 109.46653 * 325.58121 * 9 8 6 33 33 H 1.08998 * 117.49711 * 214.97482 * 10 8 6 34 34 H 1.08997 * 117.50353 * 0.02562 * 10 8 6 35 35 H 1.09001 * 109.47564 * 29.99927 * 16 15 2 36 36 H 1.09003 * 109.47397 * 150.00509 * 16 15 2 37 37 H 0.96996 * 119.99913 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 0.0006 5 7 4.7734 1.4749 0.0060 6 6 4.6367 2.8157 0.0055 7 8 3.5302 3.3123 0.0009 8 6 5.8586 3.6976 0.0119 9 6 7.0648 3.1598 -0.7605 10 6 5.6370 5.2115 0.0105 11 6 6.1354 4.5121 1.2773 12 1 5.4339 4.4096 2.1052 13 35 8.0141 4.7872 1.7867 14 7 3.6336 -0.6577 0.0004 15 7 2.3016 -1.0910 0.0005 16 6 1.8499 -2.4846 0.0006 17 6 1.6946 -2.9622 1.4215 18 1 1.9110 -2.2946 2.2423 19 6 1.2770 -4.2519 1.6735 20 7 1.0139 -5.0651 0.6740 21 14 1.0837 -4.8436 3.4348 22 1 -0.2994 -4.5693 3.9002 23 1 1.3470 -6.3037 3.4981 24 1 2.0502 -4.1281 4.3062 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8897 -0.5144 27 1 -0.3634 -0.8904 -0.5133 28 1 1.9719 2.1210 0.0004 29 1 5.6583 1.0776 0.0101 30 1 6.9759 3.4360 -1.8112 31 1 7.9795 3.5862 -0.3488 32 1 7.0981 2.0739 -0.6720 33 1 6.3509 5.8241 -0.5400 34 1 4.6075 5.5695 0.0053 35 1 0.8915 -2.5560 -0.5136 36 1 2.5848 -3.1048 -0.5128 37 1 0.7205 -5.9724 0.8514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907190463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:27 Heat of formation + Delta-G solvation = 51.230530 kcal Electronic energy + Delta-G solvation = -21111.252690 eV Core-core repulsion = 17743.868238 eV Total energy + Delta-G solvation = -3367.384452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.40788 -41.18157 -38.12172 -36.41584 -35.34957 -33.12586 -32.66682 -31.27675 -29.68645 -28.61315 -27.90632 -25.75110 -24.41083 -23.08905 -21.87710 -21.32531 -20.03652 -18.81552 -18.19440 -17.78958 -17.14896 -16.60089 -16.35089 -15.96355 -15.73629 -15.20935 -14.76867 -14.41395 -14.23988 -13.88423 -13.83988 -13.69143 -13.64067 -13.48726 -13.15540 -12.86374 -12.67086 -12.59348 -12.34696 -12.26599 -12.13595 -11.60663 -11.45120 -11.39474 -11.07253 -10.77025 -10.74170 -10.66052 -9.62897 -9.18848 -8.34201 -6.51711 0.37335 0.80882 1.26709 1.29224 1.37502 1.38818 1.50399 2.02739 2.22683 2.36660 2.48774 2.95908 3.24958 3.39379 3.46373 3.74186 3.86183 4.12609 4.37120 4.42212 4.68836 4.70631 4.73550 4.76059 4.78978 4.87206 4.89799 4.95794 4.98254 5.11138 5.19450 5.22487 5.52449 5.79474 5.88562 6.17972 6.23270 6.60148 6.89416 7.02234 7.19350 8.72025 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.002522 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.728267 B =11098.278677 C =11882.999943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.088 3.912 3 C -0.298 4.298 4 C 0.270 3.730 5 N -0.618 5.618 6 C 0.556 3.444 7 O -0.538 6.538 8 C -0.140 4.140 9 C -0.130 4.130 10 C -0.099 4.099 11 C -0.098 4.098 12 H 0.139 0.861 13 Br -0.098 7.098 14 N -0.357 5.357 15 N -0.341 5.341 16 C 0.275 3.725 17 C -0.554 4.554 18 H 0.049 0.951 19 C 0.024 3.976 20 N -0.918 5.918 21 Si 0.971 3.029 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.276 1.276 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.169 0.831 29 H 0.423 0.577 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.053 0.947 36 H 0.025 0.975 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 22.427 -1.165 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.329 4.329 4 C 0.016 3.984 5 N -0.268 5.268 6 C 0.343 3.657 7 O -0.413 6.413 8 C -0.145 4.145 9 C -0.187 4.187 10 C -0.137 4.137 11 C -0.194 4.194 12 H 0.157 0.843 13 Br -0.016 7.016 14 N -0.187 5.187 15 N -0.123 5.123 16 C 0.156 3.844 17 C -0.592 4.592 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.795 3.205 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.201 1.201 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.186 0.814 29 H 0.262 0.738 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.749 21.531 -1.039 25.044 hybrid contribution -0.520 -0.579 0.741 1.075 sum 12.230 20.952 -0.298 24.262 Atomic orbital electron populations 1.20482 0.85251 1.04300 1.04003 1.21766 0.96710 0.86422 0.99322 1.21420 0.89776 0.99971 1.21692 1.19322 0.88724 0.89266 1.01083 1.42551 1.07070 1.05117 1.72024 1.19968 0.90287 0.80773 0.74641 1.90632 1.27595 1.74208 1.48848 1.21625 0.95687 0.94738 1.02470 1.21707 0.94422 1.01807 1.00777 1.23606 1.04940 0.90255 0.94933 1.25808 0.91397 1.07174 0.95064 0.84310 1.97353 1.14954 1.96685 1.92658 1.77188 1.00137 1.09974 1.31420 1.48805 1.01715 1.07590 1.54237 1.19262 0.94969 0.72358 0.97817 1.21429 1.47627 0.98399 0.91743 0.93274 1.25724 0.93918 0.95901 1.02209 1.69995 1.45019 1.07569 1.32995 0.85361 0.78984 0.77581 0.78601 1.18893 1.19888 1.20123 0.89771 0.87445 0.91249 0.81407 0.73831 0.89395 0.88877 0.91320 0.83954 0.86127 0.92896 0.95733 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 10.11 71.23 0.72 -1.98 16 2 C 0.09 3.68 6.92 41.38 0.29 3.97 16 3 C -0.30 -11.98 9.52 22.10 0.21 -11.77 16 4 C 0.27 10.89 8.11 133.32 1.08 11.97 16 5 N -0.62 -18.63 5.35 -307.52 -1.64 -20.28 16 6 C 0.56 14.84 7.36 87.66 0.65 15.48 16 7 O -0.54 -17.40 13.39 -3.06 -0.04 -17.44 16 8 C -0.14 -2.43 2.61 -52.93 -0.14 -2.57 16 9 C -0.13 -1.72 9.66 71.98 0.70 -1.02 16 10 C -0.10 -1.33 9.58 30.61 0.29 -1.03 16 11 C -0.10 -1.52 6.68 30.61 0.20 -1.32 16 12 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 13 Br -0.10 -1.45 31.94 -20.37 -0.65 -2.10 16 14 N -0.36 -16.74 12.59 -54.45 -0.69 -17.42 16 15 N -0.34 -16.47 3.59 -338.45 -1.22 -17.69 16 16 C 0.27 14.50 5.99 85.64 0.51 15.01 16 17 C -0.55 -31.02 9.39 25.60 0.24 -30.78 16 18 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 19 C 0.02 1.29 5.46 84.66 0.46 1.75 16 20 N -0.92 -51.66 13.29 21.45 0.28 -51.38 16 21 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.07 2.33 7.07 -2.38 -0.02 2.32 16 28 H 0.17 6.40 5.92 -2.91 -0.02 6.39 16 29 H 0.42 10.54 7.12 -92.71 -0.66 9.88 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.08 5.79 -2.39 -0.01 1.06 16 32 H 0.07 0.92 6.38 -2.39 -0.02 0.91 16 33 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.80 7.67 -2.39 -0.02 1.78 16 35 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 36 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -67.52 334.36 3.74 -63.78 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.45 Total: 19.84 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.21 Total: -2.29 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -3.26 Total: -106.76 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.04 Total: -17.44 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 35 Polarization: -1.45 SS G_CDS: -0.65 Total: -2.10 kcal Total: -67.52 3.74 -63.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907190463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.013 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds