Wall clock time and date at job start Sat Apr 11 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46715 * 2 1 4 4 C 1.46501 * 120.00047 * 275.52175 * 3 2 1 5 5 C 1.50700 * 109.47166 * 270.00662 * 4 3 2 6 6 H 1.07996 * 120.00615 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99545 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00434 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99779 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47208 * 89.99916 * 9 7 5 11 11 H 1.48497 * 109.47249 * 210.00072 * 9 7 5 12 12 H 1.48501 * 109.47097 * 329.99777 * 9 7 5 13 13 C 1.34774 * 120.00120 * 95.53025 * 3 2 1 14 14 O 1.21283 * 120.00223 * 185.11820 * 13 3 2 15 15 C 1.50706 * 119.99860 * 5.11371 * 13 3 2 16 16 N 1.46498 * 115.54849 * 66.42749 * 15 13 3 17 17 C 1.35013 * 126.04045 * 10.41962 * 16 15 13 18 18 C 1.35360 * 107.73474 * 179.87499 * 17 16 15 19 19 Br 1.89104 * 126.04277 * 180.14935 * 18 17 16 20 20 C 1.39909 * 107.90771 * 0.39100 * 18 17 16 21 21 N 1.30844 * 108.21099 * 359.75740 * 20 18 17 22 22 C 1.52997 * 117.49857 * 212.09945 * 15 13 3 23 23 C 1.53001 * 117.49769 * 280.75836 * 15 13 3 24 24 H 1.09003 * 109.46706 * 185.73140 * 1 2 3 25 25 H 1.08992 * 109.47154 * 305.73342 * 1 2 3 26 26 H 1.08998 * 109.46904 * 65.73702 * 1 2 3 27 27 H 1.09006 * 109.47133 * 240.00172 * 2 1 3 28 28 H 1.08995 * 109.47037 * 119.99711 * 2 1 3 29 29 H 1.09005 * 109.47120 * 30.00425 * 4 3 2 30 30 H 1.09003 * 109.47262 * 150.00160 * 4 3 2 31 31 H 0.96996 * 120.00269 * 179.97438 * 8 7 5 32 32 H 1.08008 * 126.13167 * 0.02562 * 17 16 15 33 33 H 1.08004 * 125.89607 * 179.73585 * 20 18 17 34 34 H 1.09003 * 117.49567 * 215.00663 * 22 15 13 35 35 H 1.09002 * 117.49939 * 0.02562 * 22 15 13 36 36 H 1.08999 * 117.49840 * 359.97373 * 23 15 13 37 37 H 1.08996 * 117.49567 * 144.99909 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1473 2.1126 -1.2628 5 6 3.5249 1.8919 -1.8327 6 1 4.2336 1.2696 -1.3066 7 6 3.8808 2.4855 -3.0252 8 7 3.0180 3.2437 -3.6656 9 14 5.5886 2.2126 -3.7312 10 1 5.5738 1.0197 -4.6155 11 1 5.9962 3.4055 -4.5160 12 1 6.5533 1.9956 -2.6233 13 6 2.3490 1.9791 1.1617 14 8 2.6642 3.1502 1.1729 15 6 2.3268 1.1925 2.4470 16 7 3.3220 0.1223 2.5500 17 6 4.3560 -0.0847 1.7068 18 6 5.0380 -1.1672 2.1488 19 35 6.5840 -1.9097 1.3522 20 6 4.3936 -1.6427 3.2960 21 7 3.3652 -0.8706 3.5371 22 6 1.9622 1.9439 3.7289 23 6 0.9674 0.9592 3.1092 24 1 -0.3633 -1.0226 0.1026 25 1 -0.3633 0.6001 0.8341 26 1 -0.3633 0.4223 -0.9369 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3998 1.7520 -1.9695 30 1 1.9944 3.1768 -1.0837 31 1 3.2685 3.6616 -4.5043 32 1 4.5972 0.5086 0.8372 33 1 4.6931 -2.4996 3.8814 34 1 2.4628 1.6419 4.6489 35 1 1.7378 3.0070 3.6426 36 1 0.0891 1.3751 2.6154 37 1 0.8136 0.0095 3.6215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464564.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:10 Heat of formation + Delta-G solvation = 82.096349 kcal Electronic energy + Delta-G solvation = -22516.216858 eV Core-core repulsion = 19150.170848 eV Total energy + Delta-G solvation = -3366.046010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.54389 -39.54466 -36.56825 -35.57859 -32.85766 -31.86017 -31.35007 -30.25934 -28.55122 -27.62993 -24.67689 -23.17458 -22.92855 -22.51251 -21.07219 -20.49131 -18.77830 -17.60764 -16.50994 -15.97509 -15.80184 -15.02932 -14.94304 -14.53933 -14.30595 -13.95016 -13.52800 -13.29556 -13.08596 -13.02907 -12.47515 -12.16266 -11.93199 -11.71714 -11.56855 -11.28704 -11.13860 -11.05816 -10.92959 -10.79279 -10.71318 -10.56607 -10.25109 -10.02861 -9.79160 -9.37098 -9.32967 -8.53758 -8.36508 -7.92889 -6.15590 -4.21830 1.57032 1.68078 2.26871 2.52336 3.09872 3.25541 3.32639 3.34563 3.40800 3.72852 4.19243 4.35150 4.52037 4.66950 4.87511 4.93692 5.19386 5.22161 5.24729 5.44118 5.51941 5.58645 5.60935 5.64726 5.77396 5.94596 5.98799 6.13405 6.30568 6.39308 6.77342 6.87623 7.23301 7.32054 7.48618 7.78462 8.06743 8.09458 8.58786 8.82785 9.44241 10.92445 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.006365 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.730639 B = 4397.887072 C = 6720.808250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.101 3.899 3 N -0.580 5.580 4 C 0.245 3.755 5 C -0.532 4.532 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.540 3.460 14 O -0.515 6.515 15 C 0.078 3.922 16 N -0.321 5.321 17 C 0.118 3.882 18 C -0.248 4.248 19 Br -0.023 7.023 20 C 0.078 3.922 21 N -0.287 5.287 22 C -0.140 4.140 23 C -0.150 4.150 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.265 0.735 32 H 0.187 0.813 33 H 0.191 0.809 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 -11.404 12.783 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.311 5.311 4 C 0.126 3.874 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.322 3.678 14 O -0.390 6.390 15 C -0.011 4.011 16 N -0.101 5.101 17 C -0.032 4.032 18 C -0.339 4.339 19 Br 0.060 6.940 20 C -0.110 4.110 21 N -0.107 5.107 22 C -0.178 4.178 23 C -0.188 4.188 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.204 0.796 33 H 0.208 0.792 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.751 -10.568 13.042 16.803 hybrid contribution 1.369 -0.275 -0.948 1.688 sum 0.618 -10.843 12.093 16.255 Atomic orbital electron populations 1.22206 0.96141 1.01576 1.02599 1.21553 0.94219 0.83636 1.02910 1.48311 1.61513 1.13595 1.07653 1.19420 0.97335 0.93039 0.77582 1.21327 0.98455 1.30990 1.06337 0.92481 1.24897 0.97535 0.94644 0.96618 1.69915 1.34956 1.31464 1.16579 0.86531 0.84180 0.77793 0.79262 1.20448 1.21004 1.19567 1.18791 0.79525 0.86791 0.82728 1.90738 1.47582 1.15594 1.85086 1.21189 0.92256 0.91126 0.96486 1.47770 1.20747 1.21561 1.20057 1.22691 0.87757 0.96719 0.96056 1.21667 1.02996 1.04806 1.04390 1.96602 1.32469 1.83261 1.81702 1.23801 0.92449 0.99265 0.95459 1.77362 1.21473 1.00602 1.11292 1.23464 1.00616 0.99315 0.94419 1.23532 0.91291 1.02378 1.01567 0.92031 0.92783 0.91822 0.89753 0.91596 0.94458 0.93492 0.92533 0.79611 0.79181 0.87142 0.86402 0.86951 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.23 37.16 0.38 -1.85 16 2 C 0.10 1.62 5.70 -4.04 -0.02 1.60 16 3 N -0.58 -11.49 2.46 -175.05 -0.43 -11.92 16 4 C 0.24 5.99 5.22 -5.19 -0.03 5.97 16 5 C -0.53 -14.19 9.39 -34.44 -0.32 -14.52 16 6 H 0.06 1.50 7.45 -52.49 -0.39 1.11 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 9 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.54 10.65 6.03 -10.98 -0.07 10.58 16 14 O -0.52 -12.20 16.27 5.56 0.09 -12.11 16 15 C 0.08 1.22 1.72 -132.97 -0.23 0.99 16 16 N -0.32 -5.01 2.96 -49.70 -0.15 -5.16 16 17 C 0.12 1.94 9.95 -17.18 -0.17 1.77 16 18 C -0.25 -3.58 6.53 -39.98 -0.26 -3.85 16 19 Br -0.02 -0.31 34.08 -68.01 -2.32 -2.63 16 20 C 0.08 1.00 12.01 -17.35 -0.21 0.79 16 21 N -0.29 -4.08 12.19 30.63 0.37 -3.71 16 22 C -0.14 -1.84 9.95 -26.70 -0.27 -2.10 16 23 C -0.15 -1.82 9.23 -26.69 -0.25 -2.06 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.68 6.27 -51.93 -0.33 0.35 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 28 H 0.07 1.01 5.16 -51.93 -0.27 0.74 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.19 3.46 7.38 -52.48 -0.39 3.07 16 33 H 0.19 1.77 8.06 -52.48 -0.42 1.34 16 34 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.12 1.55 8.01 -51.93 -0.42 1.14 16 36 H 0.11 1.26 6.85 -51.93 -0.36 0.91 16 37 H 0.12 1.30 8.01 -51.93 -0.42 0.89 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -30.04 336.99 -7.78 -37.82 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.61 Total: 2.18 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.54 Total: -0.97 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.53 Total: -45.51 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.32 Total: -2.63 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.04 -7.78 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464564.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.915 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds