Wall clock time and date at job start Sat Apr 11 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.99652 * 2 1 4 4 C 1.54334 * 109.78071 * 121.16713 * 2 1 3 5 5 C 1.55158 * 103.01924 * 97.49572 * 4 2 1 6 6 H 1.08995 * 111.00737 * 277.23147 * 5 4 2 7 7 N 1.46503 * 111.00233 * 153.37677 * 5 4 2 8 8 C 1.36940 * 119.99924 * 161.34902 * 7 5 4 9 9 H 1.08004 * 119.99915 * 0.02562 * 8 7 5 10 10 C 1.38809 * 119.99903 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00136 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99793 * 179.97438 * 10 8 7 13 13 H 1.48509 * 109.47074 * 60.00161 * 12 10 8 14 14 H 1.48492 * 109.47201 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47142 * 300.00178 * 12 10 8 16 16 C 1.54915 * 101.58347 * 35.30532 * 5 4 2 17 17 N 1.47027 * 109.87882 * 238.90597 * 2 1 3 18 18 C 1.34777 * 125.64579 * 59.56335 * 17 2 1 19 19 O 1.21632 * 120.00385 * 1.21240 * 18 17 2 20 20 C 1.47259 * 119.99959 * 181.21668 * 18 17 2 21 21 C 1.36756 * 126.93475 * 351.54292 * 20 18 17 22 22 N 1.34732 * 108.40963 * 180.26523 * 21 20 18 23 23 H 0.96998 * 124.85296 * 179.75064 * 22 21 20 24 24 C 1.36463 * 110.29346 * 359.71517 * 22 21 20 25 25 Br 1.89097 * 125.58040 * 179.97438 * 24 22 21 26 26 C 1.34585 * 108.83817 * 359.97438 * 24 22 21 27 27 H 1.09005 * 109.46894 * 179.64285 * 1 2 3 28 28 H 1.09005 * 109.46523 * 299.63762 * 1 2 3 29 29 H 1.08992 * 109.47449 * 59.64180 * 1 2 3 30 30 H 1.08993 * 110.85114 * 339.02636 * 4 2 1 31 31 H 1.09002 * 110.66716 * 215.87474 * 4 2 1 32 32 H 0.96997 * 120.00062 * 341.35604 * 7 5 4 33 33 H 0.97003 * 119.99691 * 180.02562 * 11 10 8 34 34 H 1.08997 * 110.36717 * 204.15086 * 16 5 4 35 35 H 1.09003 * 110.36358 * 81.82843 * 16 5 4 36 36 H 1.07996 * 125.79413 * 359.97438 * 21 20 18 37 37 H 1.07999 * 126.83621 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0523 -0.7516 1.2427 5 6 2.3562 -2.1697 0.6913 6 1 1.4523 -2.7779 0.6578 7 7 3.4001 -2.8276 1.4811 8 6 3.5514 -4.1872 1.4188 9 1 2.9013 -4.7744 0.7871 10 6 4.5402 -4.8105 2.1675 11 7 5.3320 -4.0949 2.9376 12 14 4.7460 -6.6653 2.0830 13 1 5.0475 -7.0668 0.6854 14 1 5.8634 -7.0801 2.9686 15 1 3.4911 -7.3233 2.5273 16 6 2.8613 -1.8465 -0.7371 17 7 2.0300 -0.7141 -1.1840 18 6 1.7753 -0.3843 -2.4657 19 8 1.0950 0.5916 -2.7191 20 6 2.3205 -1.2058 -3.5596 21 6 3.2240 -2.2264 -3.4491 22 7 3.4667 -2.7150 -4.6811 23 1 4.0757 -3.4437 -4.8783 24 6 2.7327 -2.0385 -5.6116 25 35 2.7428 -2.3692 -7.4734 26 6 2.0006 -1.0975 -4.9873 27 1 -0.3633 -1.0277 -0.0064 28 1 -0.3632 0.5082 0.8933 29 1 -0.3634 0.5193 -0.8867 30 1 1.2887 -0.7952 2.0191 31 1 2.9602 -0.2828 1.6224 32 1 3.9841 -2.3001 2.0481 33 1 6.0233 -4.5305 3.4605 34 1 2.7177 -2.7048 -1.3934 35 1 3.9123 -1.5588 -0.7117 36 1 3.6709 -2.5777 -2.5309 37 1 1.3178 -0.3980 -5.4466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989222386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:12 Heat of formation + Delta-G solvation = 38.269218 kcal Electronic energy + Delta-G solvation = -21651.049353 eV Core-core repulsion = 18283.102857 eV Total energy + Delta-G solvation = -3367.946497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.36810 -39.55085 -37.18764 -34.21337 -32.47047 -31.77206 -31.39654 -30.75318 -28.37574 -28.19789 -25.62681 -24.21913 -23.14468 -20.96242 -20.78029 -20.26500 -19.02342 -17.66147 -17.35759 -16.34452 -15.54215 -15.17892 -14.84261 -14.49826 -14.12632 -13.92223 -13.43041 -13.29729 -13.22062 -13.01263 -12.86598 -12.42813 -12.27966 -11.85461 -11.73986 -11.23775 -11.21749 -11.00800 -10.81787 -10.66286 -10.63039 -10.34917 -10.04152 -9.83911 -9.64389 -9.07483 -9.04926 -8.46788 -8.29079 -7.16491 -5.92794 -3.24043 1.06505 1.69613 2.01600 2.98752 3.32522 3.37244 3.39601 3.41320 3.67026 4.44308 4.76611 4.84860 5.08180 5.09159 5.23030 5.28568 5.42790 5.49453 5.55844 5.63452 5.75869 5.82801 5.86406 6.04322 6.10222 6.19669 6.29690 6.33808 6.43910 6.52357 6.54348 6.70835 6.83065 7.06338 7.54733 7.87614 8.24731 8.53015 9.36767 9.90855 10.25827 11.28967 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.003400 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.435993 B = 8234.094610 C =10433.043183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.071 0.929 4 C -0.137 4.137 5 C 0.173 3.827 6 H 0.065 0.935 7 N -0.713 5.713 8 C -0.252 4.252 9 H 0.072 0.928 10 C -0.006 4.006 11 N -0.928 5.928 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.061 3.939 17 N -0.606 5.606 18 C 0.603 3.397 19 O -0.553 6.553 20 C -0.221 4.221 21 C 0.066 3.934 22 N -0.537 5.537 23 H 0.422 0.578 24 C -0.010 4.010 25 Br 0.000 7.000 26 C -0.088 4.088 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.388 0.612 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.201 0.799 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 4.303 -17.368 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.061 3.939 6 H 0.083 0.917 7 N -0.353 5.353 8 C -0.383 4.383 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.575 5.575 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.065 4.065 17 N -0.339 5.339 18 C 0.393 3.607 19 O -0.433 6.433 20 C -0.231 4.231 21 C -0.072 4.072 22 N -0.134 5.134 23 H 0.260 0.740 24 C -0.197 4.197 25 Br 0.083 6.917 26 C -0.116 4.116 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.222 0.778 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.217 0.783 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.917 4.413 -18.311 19.466 hybrid contribution 0.815 -1.286 0.433 1.583 sum -4.102 3.127 -17.878 18.607 Atomic orbital electron populations 1.22138 0.95049 1.02291 1.02442 1.21468 0.94398 0.95903 0.84420 0.91131 1.22984 1.01781 0.96823 0.95951 1.21288 0.92672 0.91408 0.88515 0.91704 1.42327 1.36937 1.04881 1.51142 1.19188 1.13362 0.83248 1.22469 0.91034 1.24758 0.98362 0.97933 0.99226 1.69643 1.22067 1.34571 1.31232 0.86288 0.77365 0.85278 0.77316 1.21239 1.21605 1.21096 1.23826 0.95066 0.87628 0.99973 1.48395 1.50347 1.30826 1.04379 1.16904 0.79642 0.83568 0.80540 1.90725 1.40663 1.28387 1.83520 1.20395 1.06480 1.02658 0.93576 1.23302 0.99435 0.95896 0.88564 1.41680 1.35927 1.30118 1.05673 0.74049 1.21760 1.06212 1.03574 0.88183 1.96747 1.98561 1.96013 1.00365 1.21850 1.00246 0.98271 0.91190 0.92461 0.92005 0.91405 0.90096 0.90544 0.77796 0.93213 0.90626 0.90979 0.78253 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.06 37.16 0.34 -1.88 16 2 C 0.14 2.08 3.50 -66.94 -0.23 1.85 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.05 6.11 -24.89 -0.15 -2.21 16 5 C 0.17 3.06 3.69 -65.78 -0.24 2.82 16 6 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 7 N -0.71 -15.89 5.28 -51.35 -0.27 -16.16 16 8 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 9 H 0.07 1.73 7.83 -52.48 -0.41 1.31 16 10 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 11 N -0.93 -26.08 13.06 55.49 0.72 -25.36 16 12 Si 0.91 20.80 29.55 -169.99 -5.02 15.77 16 13 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.06 0.96 4.98 -2.53 -0.01 0.94 16 17 N -0.61 -9.48 3.08 -164.32 -0.51 -9.99 16 18 C 0.60 10.12 7.61 -12.59 -0.10 10.03 16 19 O -0.55 -10.67 15.92 5.25 0.08 -10.58 16 20 C -0.22 -3.22 6.23 -103.35 -0.64 -3.87 16 21 C 0.07 0.81 10.25 -16.81 -0.17 0.64 16 22 N -0.54 -5.61 5.91 -11.27 -0.07 -5.68 16 23 H 0.42 3.22 8.96 -40.82 -0.37 2.85 16 24 C -0.01 -0.12 7.61 -16.78 -0.13 -0.25 16 25 Br 0.00 0.00 34.08 -68.01 -2.32 -2.32 16 26 C -0.09 -1.18 10.93 -37.45 -0.41 -1.58 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.04 6.78 -51.93 -0.35 0.68 16 30 H 0.08 1.14 7.83 -51.93 -0.41 0.73 16 31 H 0.08 1.16 7.99 -51.93 -0.42 0.74 16 32 H 0.39 9.28 7.71 -40.82 -0.31 8.97 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.08 1.12 5.31 -51.93 -0.28 0.85 16 35 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 36 H 0.20 2.34 4.75 -52.49 -0.25 2.09 16 37 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -29.81 327.77 -8.89 -38.70 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.46 Total: 10.90 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.00 Total: -0.22 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.12 Total: -57.19 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.32 Total: -2.32 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.81 -8.89 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.972 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds