Wall clock time and date at job start Sat Apr 11 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48498 * 109.46969 * 239.99703 * 3 2 1 5 5 H 1.48505 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47363 * 119.99755 * 3 2 1 7 7 C 1.38809 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99795 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00080 * 180.02562 * 9 7 2 11 11 C 1.53077 * 109.44133 * 84.79398 * 10 9 7 12 12 C 1.53198 * 109.29006 * 181.23434 * 11 10 9 13 13 N 1.46925 * 108.89397 * 305.57690 * 12 11 10 14 14 C 1.34778 * 120.62962 * 233.51728 * 13 12 11 15 15 O 1.21626 * 119.99625 * 173.77071 * 14 13 12 16 16 C 1.47255 * 120.00089 * 353.76624 * 14 13 12 17 17 C 1.36753 * 126.93630 * 151.64908 * 16 14 13 18 18 N 1.34732 * 108.41102 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.84944 * 180.02562 * 18 17 16 20 20 C 1.36456 * 110.29123 * 0.02562 * 18 17 16 21 21 Br 1.89106 * 125.57720 * 180.02562 * 20 18 17 22 22 C 1.34586 * 108.84301 * 359.74582 * 20 18 17 23 23 C 1.46925 * 118.73898 * 53.54009 * 13 12 11 24 24 C 1.53042 * 109.45753 * 204.99796 * 10 9 7 25 25 H 0.97001 * 119.99429 * 0.02562 * 1 2 3 26 26 H 0.97006 * 119.99725 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.45808 * 324.96898 * 10 9 7 28 28 H 1.09001 * 109.39059 * 61.36297 * 11 10 9 29 29 H 1.08996 * 109.62050 * 301.25390 * 11 10 9 30 30 H 1.08998 * 109.58174 * 185.72239 * 12 11 10 31 31 H 1.08997 * 109.58346 * 65.44108 * 12 11 10 32 32 H 1.07998 * 125.79047 * 359.97438 * 17 16 14 33 33 H 1.07995 * 126.83517 * 180.25734 * 22 20 18 34 34 H 1.09005 * 109.58503 * 66.17250 * 23 13 12 35 35 H 1.08997 * 109.58872 * 186.45617 * 23 13 12 36 36 H 1.09006 * 109.49776 * 58.67619 * 24 10 9 37 37 H 1.08994 * 109.49935 * 298.58218 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 2.4251 -4.0319 1.4397 12 6 3.2175 -5.3430 1.4341 13 7 2.4405 -6.3655 0.7205 14 6 2.1719 -7.5524 1.2998 15 8 1.4341 -8.3458 0.7470 16 6 2.7717 -7.8887 2.6019 17 6 2.2509 -8.7171 3.5572 18 7 3.1066 -8.7583 4.5971 19 1 2.9711 -9.2757 5.4063 20 6 4.1912 -7.9682 4.3491 21 35 5.6554 -7.7111 5.5178 22 6 4.0511 -7.4067 3.1340 23 6 1.9622 -6.0698 -0.6369 24 6 1.1808 -4.7525 -0.6083 25 1 -0.4849 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.9689 -3.5507 -0.5876 28 1 1.5140 -4.1599 2.0241 29 1 3.0326 -3.2414 1.8804 30 1 3.3938 -5.6677 2.4596 31 1 4.1718 -5.1910 0.9298 32 1 1.3130 -9.2482 3.4895 33 1 4.7422 -6.7338 2.6482 34 1 2.8131 -5.9753 -1.3116 35 1 1.3124 -6.8752 -0.9790 36 1 0.9027 -4.4723 -1.6244 37 1 0.2813 -4.8761 -0.0054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996813730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:19 Heat of formation + Delta-G solvation = 32.519871 kcal Electronic energy + Delta-G solvation = -21464.456069 eV Core-core repulsion = 18096.260262 eV Total energy + Delta-G solvation = -3368.195807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.56524 -39.50439 -37.17609 -34.44026 -32.37034 -32.13432 -31.52316 -30.34011 -29.19038 -28.48353 -25.14298 -23.37115 -23.04727 -21.66336 -20.97446 -19.92080 -19.04124 -18.14095 -17.02815 -16.34163 -15.60287 -15.26558 -14.78836 -14.49770 -14.36205 -13.92912 -13.63932 -13.57230 -13.42552 -13.14332 -12.94159 -12.47518 -12.20206 -11.79530 -11.43237 -11.34418 -10.91060 -10.90481 -10.83212 -10.76375 -10.41224 -10.23774 -9.80392 -9.76931 -9.63312 -9.13722 -8.85439 -8.65291 -8.33947 -6.94759 -5.75381 -3.04304 0.92988 1.56138 1.83889 2.83108 3.21447 3.44347 3.46807 3.49117 3.49952 4.59428 4.67956 4.72793 5.01848 5.15078 5.27359 5.38134 5.42001 5.47287 5.58185 5.60889 5.76646 5.78308 6.01017 6.09792 6.17927 6.28958 6.32508 6.45213 6.49291 6.57799 6.73111 6.87526 6.96700 7.10190 7.64446 7.69982 8.37279 8.43121 9.54102 10.12390 10.47081 11.47241 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.002964 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.825637 B = 9444.106741 C =11050.654623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.178 3.822 11 C -0.150 4.150 12 C 0.095 3.905 13 N -0.598 5.598 14 C 0.591 3.409 15 O -0.556 6.556 16 C -0.218 4.218 17 C 0.093 3.907 18 N -0.540 5.540 19 H 0.421 0.579 20 C -0.003 4.003 21 Br 0.005 6.995 22 C -0.115 4.115 23 C 0.117 3.883 24 C -0.138 4.138 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.186 0.814 33 H 0.162 0.838 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.690 -20.762 12.100 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.191 4.191 12 C -0.028 4.028 13 N -0.330 5.330 14 C 0.380 3.620 15 O -0.436 6.436 16 C -0.229 4.229 17 C -0.045 4.045 18 N -0.137 5.137 19 H 0.259 0.741 20 C -0.190 4.190 21 Br 0.088 6.912 22 C -0.142 4.142 23 C -0.006 4.006 24 C -0.177 4.177 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.203 0.797 33 H 0.180 0.820 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.968 -20.956 12.338 26.678 hybrid contribution -0.186 0.835 0.300 0.907 sum 10.782 -20.121 12.638 26.093 Atomic orbital electron populations 1.69658 1.05126 1.25738 1.57632 1.24740 0.95482 0.97660 1.03041 0.86288 0.78528 0.83659 0.77829 1.21277 1.21746 1.21292 1.19197 0.90944 0.84138 1.42762 0.91219 1.42435 1.05800 0.99724 1.88517 1.20187 0.94397 0.86045 0.92557 1.22663 1.00085 0.94784 1.01539 1.22282 0.94304 0.88628 0.97575 1.47923 1.53987 1.14443 1.16632 1.17283 0.79904 0.81213 0.83566 1.90754 1.38049 1.49805 1.64991 1.20385 0.98167 1.06901 0.97440 1.21942 0.96010 0.99724 0.86784 1.41564 1.16279 1.38030 1.17798 0.74087 1.21829 0.92482 1.06178 0.98535 1.96800 1.36556 1.96301 1.61554 1.22238 0.97611 1.01558 0.92838 1.21616 0.98715 0.98096 0.82127 1.22190 0.99239 0.94143 1.02138 0.93483 0.78290 0.93484 0.92305 0.90733 0.88934 0.91733 0.79737 0.82031 0.91598 0.89330 0.90618 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.91 5.12 -53.37 -0.27 -18.19 16 10 C 0.18 3.44 2.73 -67.87 -0.19 3.26 16 11 C -0.15 -2.56 5.67 -26.59 -0.15 -2.71 16 12 C 0.10 1.29 5.28 -3.71 -0.02 1.27 16 13 N -0.60 -8.74 2.97 -174.10 -0.52 -9.25 16 14 C 0.59 8.95 7.63 -12.60 -0.10 8.85 16 15 O -0.56 -9.93 16.44 5.25 0.09 -9.85 16 16 C -0.22 -2.66 5.66 -103.35 -0.59 -3.25 16 17 C 0.09 0.88 11.80 -16.82 -0.20 0.68 16 18 N -0.54 -4.06 5.91 -11.26 -0.07 -4.13 16 19 H 0.42 1.84 8.96 -40.82 -0.37 1.48 16 20 C 0.00 -0.03 7.61 -16.79 -0.13 -0.16 16 21 Br 0.00 0.04 34.08 -68.01 -2.32 -2.28 16 22 C -0.12 -1.22 8.57 -37.45 -0.32 -1.54 16 23 C 0.12 1.72 6.44 -3.71 -0.02 1.70 16 24 C -0.14 -2.33 5.55 -26.61 -0.15 -2.47 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 27 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.13 4.12 -51.93 -0.21 0.92 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.16 1.57 6.61 -52.49 -0.35 1.22 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 326.44 15.07 4.92 4.92 Total: -1.00 -32.77 326.44 -9.10 -41.87 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.53 Total: 8.67 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.10 Total: -1.53 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.13 Total: -58.96 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.32 Total: -2.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.77 -9.10 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996813730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.389 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds