Wall clock time and date at job start Sat Apr 11 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48498 * 109.46969 * 239.99703 * 3 2 1 5 5 H 1.48505 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47363 * 119.99755 * 3 2 1 7 7 C 1.38809 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99795 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00080 * 180.02562 * 9 7 2 11 11 C 1.53077 * 109.44133 * 84.79398 * 10 9 7 12 12 C 1.53198 * 109.29006 * 181.23434 * 11 10 9 13 13 N 1.46925 * 108.89397 * 305.57690 * 12 11 10 14 14 C 1.34778 * 120.62962 * 233.51728 * 13 12 11 15 15 O 1.21626 * 119.99625 * 173.77071 * 14 13 12 16 16 C 1.47255 * 120.00089 * 353.76624 * 14 13 12 17 17 C 1.36753 * 126.93630 * 151.64908 * 16 14 13 18 18 N 1.34732 * 108.41102 * 179.97438 * 17 16 14 19 19 H 0.97000 * 124.84944 * 180.02562 * 18 17 16 20 20 C 1.36456 * 110.29123 * 0.02562 * 18 17 16 21 21 Br 1.89106 * 125.57720 * 180.02562 * 20 18 17 22 22 C 1.34586 * 108.84301 * 359.74582 * 20 18 17 23 23 C 1.46925 * 118.73898 * 53.54009 * 13 12 11 24 24 C 1.53042 * 109.45753 * 204.99796 * 10 9 7 25 25 H 0.97001 * 119.99429 * 0.02562 * 1 2 3 26 26 H 0.97006 * 119.99725 * 359.97438 * 9 7 2 27 27 H 1.09003 * 109.45808 * 324.96898 * 10 9 7 28 28 H 1.09001 * 109.39059 * 61.36297 * 11 10 9 29 29 H 1.08996 * 109.62050 * 301.25390 * 11 10 9 30 30 H 1.08998 * 109.58174 * 185.72239 * 12 11 10 31 31 H 1.08997 * 109.58346 * 65.44108 * 12 11 10 32 32 H 1.07998 * 125.79047 * 359.97438 * 17 16 14 33 33 H 1.07995 * 126.83517 * 180.25734 * 22 20 18 34 34 H 1.09005 * 109.58503 * 66.17250 * 23 13 12 35 35 H 1.08997 * 109.58872 * 186.45617 * 23 13 12 36 36 H 1.09006 * 109.49776 * 58.67619 * 24 10 9 37 37 H 1.08994 * 109.49935 * 298.58218 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 2.4251 -4.0319 1.4397 12 6 3.2175 -5.3430 1.4341 13 7 2.4405 -6.3655 0.7205 14 6 2.1719 -7.5524 1.2998 15 8 1.4341 -8.3458 0.7470 16 6 2.7717 -7.8887 2.6019 17 6 2.2509 -8.7171 3.5572 18 7 3.1066 -8.7583 4.5971 19 1 2.9711 -9.2757 5.4063 20 6 4.1912 -7.9682 4.3491 21 35 5.6554 -7.7111 5.5178 22 6 4.0511 -7.4067 3.1340 23 6 1.9622 -6.0698 -0.6369 24 6 1.1808 -4.7525 -0.6083 25 1 -0.4849 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0005 27 1 2.9689 -3.5507 -0.5876 28 1 1.5140 -4.1599 2.0241 29 1 3.0326 -3.2414 1.8804 30 1 3.3938 -5.6677 2.4596 31 1 4.1718 -5.1910 0.9298 32 1 1.3130 -9.2482 3.4895 33 1 4.7422 -6.7338 2.6482 34 1 2.8131 -5.9753 -1.3116 35 1 1.3124 -6.8752 -0.9790 36 1 0.9027 -4.4723 -1.6244 37 1 0.2813 -4.8761 -0.0054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996813730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:18 Heat of formation + Delta-G solvation = 10.830861 kcal Electronic energy + Delta-G solvation = -21465.396575 eV Core-core repulsion = 18096.260262 eV Total energy + Delta-G solvation = -3369.136313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35427 -40.66467 -38.56478 -36.10636 -33.92053 -32.83674 -32.79076 -31.47520 -30.87060 -29.27932 -26.71339 -24.86965 -24.39154 -22.93837 -21.76108 -21.28519 -19.91427 -19.30711 -18.89455 -17.49441 -16.69648 -16.62060 -16.29803 -15.55038 -15.43026 -15.29517 -15.03031 -15.00644 -14.58237 -14.48801 -14.06062 -13.68850 -13.36334 -13.19552 -12.96458 -12.77316 -12.53023 -12.20359 -12.14884 -12.00827 -11.94719 -11.65489 -11.57406 -11.27664 -10.99657 -10.81141 -9.94550 -9.62440 -9.31866 -8.97004 -7.90405 -5.19092 0.23636 0.74387 1.02200 1.50028 1.52853 1.58693 1.97489 2.28747 2.45784 2.59805 3.42809 3.69518 3.87618 3.99528 4.01789 4.16346 4.22384 4.28575 4.38009 4.43435 4.48264 4.66645 4.79654 4.86176 4.88172 4.92065 5.07779 5.11426 5.33944 5.39396 5.52257 5.55846 5.60010 5.71334 6.29970 6.31154 6.50750 7.23017 7.37054 8.13201 8.36437 9.33274 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.002964 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.825637 B = 9444.106741 C =11050.654623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.236 4.236 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.173 3.827 11 C -0.139 4.139 12 C 0.106 3.894 13 N -0.601 5.601 14 C 0.589 3.411 15 O -0.591 6.591 16 C -0.254 4.254 17 C 0.109 3.891 18 N -0.523 5.523 19 H 0.438 0.562 20 C -0.004 4.004 21 Br 0.019 6.981 22 C -0.126 4.126 23 C 0.123 3.877 24 C -0.127 4.127 25 H 0.249 0.751 26 H 0.369 0.631 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.204 0.796 33 H 0.169 0.831 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.721 -21.815 13.240 28.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.378 5.378 10 C 0.065 3.935 11 C -0.180 4.180 12 C -0.016 4.016 13 N -0.332 5.332 14 C 0.380 3.620 15 O -0.474 6.474 16 C -0.264 4.264 17 C -0.031 4.031 18 N -0.121 5.121 19 H 0.279 0.721 20 C -0.191 4.191 21 Br 0.102 6.898 22 C -0.153 4.153 23 C 0.000 4.000 24 C -0.166 4.166 25 H 0.058 0.942 26 H 0.201 0.799 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.221 0.779 33 H 0.186 0.814 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.063 -22.053 13.512 28.975 hybrid contribution -0.786 1.057 -0.004 1.317 sum 12.277 -20.996 13.509 27.822 Atomic orbital electron populations 1.69828 1.06739 1.25955 1.59904 1.25552 0.96282 1.01091 1.04069 0.85238 0.77156 0.79284 0.78255 1.20347 1.22610 1.20267 1.19621 0.91535 0.85085 1.40533 0.90236 1.42671 1.05361 1.01086 1.88659 1.20438 0.94328 0.84643 0.94128 1.22448 0.99657 0.96646 0.99207 1.22268 0.94047 0.86266 0.99035 1.47983 1.54014 1.14710 1.16527 1.17702 0.79260 0.80747 0.84272 1.90726 1.39761 1.50770 1.66098 1.20260 0.99638 1.09419 0.97114 1.22214 0.96353 0.98248 0.86285 1.41567 1.15291 1.37273 1.17955 0.72081 1.21939 0.93009 1.05771 0.98400 1.96828 1.35835 1.96269 1.60827 1.22309 0.97293 1.02228 0.93431 1.21535 0.99121 0.96351 0.82958 1.22044 0.98506 0.94639 1.01398 0.94214 0.79926 0.93103 0.94162 0.91604 0.87142 0.89590 0.77900 0.81398 0.89588 0.89665 0.90852 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.93 13.06 21.65 0.28 -59.64 16 2 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.24 -12.86 9.93 84.03 0.83 -12.03 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.01 5.12 -322.75 -1.65 -38.66 16 10 C 0.17 6.62 2.73 45.03 0.12 6.75 16 11 C -0.14 -4.67 5.67 30.69 0.17 -4.49 16 12 C 0.11 2.69 5.28 86.36 0.46 3.14 16 13 N -0.60 -16.85 2.97 -822.97 -2.45 -19.30 16 14 C 0.59 17.27 7.63 86.61 0.66 17.93 16 15 O -0.59 -20.90 16.44 -4.11 -0.07 -20.97 16 16 C -0.25 -5.76 5.66 -19.04 -0.11 -5.87 16 17 C 0.11 1.80 11.80 83.90 0.99 2.79 16 18 N -0.52 -6.43 5.91 -189.55 -1.12 -7.55 16 19 H 0.44 2.46 8.96 -92.71 -0.83 1.63 16 20 C 0.00 -0.06 7.61 83.14 0.63 0.58 16 21 Br 0.02 0.26 34.08 -20.37 -0.69 -0.44 16 22 C -0.13 -2.39 8.57 23.65 0.20 -2.18 16 23 C 0.12 3.52 6.44 86.36 0.56 4.07 16 24 C -0.13 -4.28 5.55 30.67 0.17 -4.11 16 25 H 0.25 14.97 8.31 -92.71 -0.77 14.19 16 26 H 0.37 20.30 7.80 -92.70 -0.72 19.57 16 27 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.11 2.48 4.12 -2.39 -0.01 2.47 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.17 2.84 6.61 -2.91 -0.02 2.82 16 34 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.08 2.54 7.00 -2.39 -0.02 2.52 16 36 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -70.91 326.44 1.05 -69.85 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.43 Total: 26.36 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.16 Total: 2.59 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -4.94 Total: -125.16 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.07 Total: -20.97 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -0.69 Total: -0.44 kcal Total: -70.91 1.05 -69.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996813730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.685 kcal (2) G-P(sol) polarization free energy of solvation -70.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds