Wall clock time and date at job start Sat Apr 11 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47212 * 89.99537 * 3 2 1 5 5 H 1.48499 * 109.47177 * 330.00080 * 3 2 1 6 6 H 1.48495 * 109.47256 * 209.99661 * 3 2 1 7 7 C 1.38810 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00337 * 18.73286 * 7 2 1 9 9 N 1.36941 * 119.99765 * 198.72880 * 7 2 1 10 10 C 1.46923 * 120.63018 * 30.81750 * 9 7 2 11 11 C 1.53621 * 108.54299 * 126.37386 * 10 9 7 12 12 C 1.53041 * 109.24760 * 54.85173 * 11 10 9 13 13 C 1.53044 * 109.53483 * 298.51635 * 12 11 10 14 14 H 1.09006 * 109.49643 * 301.41095 * 13 12 11 15 15 N 1.46502 * 109.49300 * 181.31588 * 13 12 11 16 16 C 1.34774 * 119.99703 * 155.16356 * 15 13 12 17 17 O 1.21630 * 120.00314 * 359.97438 * 16 15 13 18 18 C 1.47256 * 120.00147 * 179.97438 * 16 15 13 19 19 C 1.36757 * 126.93442 * 359.68046 * 18 16 15 20 20 N 1.34731 * 108.40934 * 179.90035 * 19 18 16 21 21 H 0.97003 * 124.85202 * 180.15255 * 20 19 18 22 22 C 1.36458 * 110.29528 * 0.37990 * 20 19 18 23 23 Br 1.89094 * 125.58014 * 179.76769 * 22 20 19 24 24 C 1.34589 * 108.83758 * 359.76709 * 22 20 19 25 25 C 1.46922 * 120.62587 * 211.09939 * 9 7 2 26 26 H 0.97001 * 120.00345 * 174.95786 * 1 2 3 27 27 H 1.09004 * 109.58214 * 246.19920 * 10 9 7 28 28 H 1.08996 * 109.58833 * 6.62563 * 10 9 7 29 29 H 1.09007 * 109.63186 * 294.85786 * 11 10 9 30 30 H 1.09001 * 109.43272 * 174.72806 * 11 10 9 31 31 H 1.08994 * 109.46113 * 178.49374 * 12 11 10 32 32 H 1.08999 * 109.44504 * 58.52556 * 12 11 10 33 33 H 0.97000 * 120.00337 * 335.15868 * 15 13 12 34 34 H 1.08001 * 125.79476 * 0.03812 * 19 18 16 35 35 H 1.08001 * 126.83481 * 179.97438 * 24 22 20 36 36 H 1.08998 * 109.59143 * 353.36785 * 25 9 7 37 37 H 1.09001 * 109.58916 * 113.80207 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4477 2.6527 -0.7000 6 1 3.5478 1.4401 -0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.5131 -2.1128 -0.2994 9 7 3.3252 -1.2334 0.3814 10 6 3.8390 -0.2827 1.3768 11 6 4.5287 -1.0746 2.4981 12 6 5.5973 -1.9852 1.8890 13 6 4.9366 -2.9809 0.9327 14 1 4.1957 -3.5689 1.4745 15 7 5.9562 -3.8724 0.3742 16 6 5.6103 -5.0970 -0.0698 17 8 4.4519 -5.4622 -0.0063 18 6 6.6349 -5.9930 -0.6317 19 6 7.9688 -5.7278 -0.7759 20 7 8.5597 -6.8056 -1.3277 21 1 9.5052 -6.8752 -1.5328 22 6 7.6370 -7.7834 -1.5616 23 35 7.9957 -9.4736 -2.3299 24 6 6.4299 -7.3479 -1.1558 25 6 4.2503 -2.2143 -0.2023 26 1 -0.4851 -0.8368 -0.0738 27 1 4.5569 0.3881 0.9047 28 1 3.0128 0.2953 1.7905 29 1 3.7917 -1.6805 3.0252 30 1 4.9968 -0.3811 3.1967 31 1 6.1072 -2.5290 2.6841 32 1 6.3200 -1.3805 1.3412 33 1 6.8801 -3.5813 0.3238 34 1 8.4647 -4.8110 -0.4932 35 1 5.4961 -7.8881 -1.2064 36 1 3.6956 -2.9110 -0.8307 37 1 5.0011 -1.6977 -0.8004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007966175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:50 Heat of formation + Delta-G solvation = 31.505514 kcal Electronic energy + Delta-G solvation = -21400.091286 eV Core-core repulsion = 18031.851493 eV Total energy + Delta-G solvation = -3368.239793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.50393 -39.28971 -37.40775 -34.36643 -32.62059 -32.13150 -31.46830 -30.70948 -29.48831 -28.08325 -24.96254 -23.77303 -21.97671 -21.63697 -20.89315 -19.83405 -19.42688 -18.65330 -17.24119 -16.35870 -15.70477 -15.25966 -14.95551 -14.43498 -14.35440 -13.96449 -13.85375 -13.49040 -13.36432 -13.28499 -12.78743 -12.58384 -12.24524 -12.03906 -11.52479 -11.39331 -11.06505 -10.92415 -10.85781 -10.57845 -10.02770 -9.85270 -9.69533 -9.55685 -9.23301 -9.07006 -8.90706 -8.66843 -8.36724 -6.98281 -6.16741 -3.28502 0.89898 1.45139 1.87238 2.81236 3.41699 3.43505 3.56163 3.61242 3.72331 4.49363 4.62702 4.76291 5.02007 5.11666 5.18862 5.33003 5.39500 5.51870 5.58088 5.58685 5.86954 5.98763 6.07329 6.15571 6.23285 6.33059 6.34389 6.46885 6.60605 6.67994 6.70964 6.81119 6.84389 7.00003 7.77636 8.13747 8.50206 8.54800 9.14787 9.65749 10.26967 11.21042 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.002316 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.358208 B =12084.849413 C =12577.757176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.017 4.017 3 Si 1.069 2.931 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.286 1.286 7 C -0.341 4.341 8 H 0.066 0.934 9 N -0.601 5.601 10 C 0.121 3.879 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.127 3.873 14 H 0.089 0.911 15 N -0.722 5.722 16 C 0.584 3.416 17 O -0.533 6.533 18 C -0.215 4.215 19 C 0.067 3.933 20 N -0.537 5.537 21 H 0.420 0.580 22 C -0.009 4.009 23 Br 0.004 6.996 24 C -0.085 4.085 25 C 0.143 3.857 26 H 0.263 0.737 27 H 0.026 0.974 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.391 0.609 34 H 0.182 0.818 35 H 0.159 0.841 36 H 0.063 0.937 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.208 -16.115 -1.853 29.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.218 4.218 3 Si 0.901 3.099 4 H -0.222 1.222 5 H -0.228 1.228 6 H -0.212 1.212 7 C -0.470 4.470 8 H 0.083 0.917 9 N -0.325 5.325 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.153 4.153 13 C 0.021 3.979 14 H 0.107 0.893 15 N -0.372 5.372 16 C 0.371 3.629 17 O -0.410 6.410 18 C -0.226 4.226 19 C -0.071 4.071 20 N -0.134 5.134 21 H 0.258 0.742 22 C -0.196 4.196 23 Br 0.088 6.912 24 C -0.112 4.112 25 C 0.015 3.985 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.224 0.776 34 H 0.199 0.801 35 H 0.177 0.823 36 H 0.082 0.918 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 24.382 -15.414 -2.087 28.921 hybrid contribution 1.162 -1.229 -0.053 1.692 sum 25.543 -16.643 -2.140 30.562 Atomic orbital electron populations 1.70881 1.06036 1.30041 1.49374 1.26264 0.96662 1.01215 0.97666 0.83716 0.74611 0.75671 0.75887 1.22172 1.22826 1.21230 1.20275 0.85469 0.95116 1.46121 0.91659 1.44295 1.07181 1.36993 1.44055 1.21518 0.97191 0.92325 0.89435 1.22076 0.97696 0.98602 0.98811 1.21672 0.98317 0.97278 0.98059 1.21694 0.89721 0.90357 0.96085 0.89337 1.45921 1.11733 1.15414 1.64143 1.17275 0.87330 0.80822 0.77510 1.90833 1.19443 1.75095 1.55633 1.20592 0.92850 0.96845 1.12286 1.22098 0.93197 0.91991 0.99767 1.41513 1.10399 1.12080 1.49443 0.74193 1.21767 0.91666 0.91473 1.14680 1.96782 1.95764 1.16913 1.81774 1.21973 0.96012 0.93925 0.99334 1.21244 0.92578 0.91731 0.92926 0.92645 0.95571 0.90674 0.91570 0.92268 0.92533 0.92138 0.77600 0.80111 0.82312 0.91803 0.96241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.02 -0.50 5.24 -17.43 -0.09 -0.60 16 3 Si 1.07 26.75 24.73 -169.99 -4.20 22.55 16 4 H -0.29 -6.82 6.56 56.52 0.37 -6.45 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.29 -6.81 6.80 56.52 0.38 -6.42 16 7 C -0.34 -9.98 9.88 -15.06 -0.15 -10.13 16 8 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 9 N -0.60 -14.86 2.72 -172.06 -0.47 -15.32 16 10 C 0.12 2.60 4.23 -3.49 -0.01 2.59 16 11 C -0.13 -2.26 6.10 -26.39 -0.16 -2.42 16 12 C -0.12 -1.68 5.35 -26.69 -0.14 -1.82 16 13 C 0.13 2.20 2.60 -67.81 -0.18 2.02 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 15 N -0.72 -9.88 5.07 -54.81 -0.28 -10.16 16 16 C 0.58 9.22 7.77 -12.60 -0.10 9.12 16 17 O -0.53 -11.13 16.64 5.25 0.09 -11.04 16 18 C -0.21 -2.60 6.29 -103.35 -0.65 -3.25 16 19 C 0.07 0.52 11.40 -16.81 -0.19 0.33 16 20 N -0.54 -3.66 5.90 -11.26 -0.07 -3.72 16 21 H 0.42 1.49 8.96 -40.82 -0.37 1.13 16 22 C -0.01 -0.08 7.61 -16.78 -0.13 -0.21 16 23 Br 0.00 0.03 34.08 -68.01 -2.32 -2.28 16 24 C -0.09 -1.01 10.91 -37.45 -0.41 -1.42 16 25 C 0.14 3.04 6.09 -3.71 -0.02 3.01 16 26 H 0.26 8.37 8.73 -40.82 -0.36 8.02 16 27 H 0.03 0.54 7.10 -51.93 -0.37 0.17 16 28 H 0.08 1.77 4.76 -51.93 -0.25 1.52 16 29 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.39 3.74 7.54 -40.82 -0.31 3.43 16 34 H 0.18 0.69 7.45 -52.49 -0.39 0.30 16 35 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.06 1.52 7.93 -51.93 -0.41 1.11 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -36.01 323.67 -8.49 -44.49 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.65 Total: 2.03 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -2.23 Total: -2.79 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.05 Total: -57.84 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.20 Total: 22.55 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.32 Total: -2.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.01 -8.49 -44.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007966175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.999 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds