Wall clock time and date at job start Sat Apr 11 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47212 * 89.99537 * 3 2 1 5 5 H 1.48499 * 109.47177 * 330.00080 * 3 2 1 6 6 H 1.48495 * 109.47256 * 209.99661 * 3 2 1 7 7 C 1.38810 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00337 * 18.73286 * 7 2 1 9 9 N 1.36941 * 119.99765 * 198.72880 * 7 2 1 10 10 C 1.46923 * 120.63018 * 30.81750 * 9 7 2 11 11 C 1.53621 * 108.54299 * 126.37386 * 10 9 7 12 12 C 1.53041 * 109.24760 * 54.85173 * 11 10 9 13 13 C 1.53044 * 109.53483 * 298.51635 * 12 11 10 14 14 H 1.09006 * 109.49643 * 301.41095 * 13 12 11 15 15 N 1.46502 * 109.49300 * 181.31588 * 13 12 11 16 16 C 1.34774 * 119.99703 * 155.16356 * 15 13 12 17 17 O 1.21630 * 120.00314 * 359.97438 * 16 15 13 18 18 C 1.47256 * 120.00147 * 179.97438 * 16 15 13 19 19 C 1.36757 * 126.93442 * 359.68046 * 18 16 15 20 20 N 1.34731 * 108.40934 * 179.90035 * 19 18 16 21 21 H 0.97003 * 124.85202 * 180.15255 * 20 19 18 22 22 C 1.36458 * 110.29528 * 0.37990 * 20 19 18 23 23 Br 1.89094 * 125.58014 * 179.76769 * 22 20 19 24 24 C 1.34589 * 108.83758 * 359.76709 * 22 20 19 25 25 C 1.46922 * 120.62587 * 211.09939 * 9 7 2 26 26 H 0.97001 * 120.00345 * 174.95786 * 1 2 3 27 27 H 1.09004 * 109.58214 * 246.19920 * 10 9 7 28 28 H 1.08996 * 109.58833 * 6.62563 * 10 9 7 29 29 H 1.09007 * 109.63186 * 294.85786 * 11 10 9 30 30 H 1.09001 * 109.43272 * 174.72806 * 11 10 9 31 31 H 1.08994 * 109.46113 * 178.49374 * 12 11 10 32 32 H 1.08999 * 109.44504 * 58.52556 * 12 11 10 33 33 H 0.97000 * 120.00337 * 335.15868 * 15 13 12 34 34 H 1.08001 * 125.79476 * 0.03812 * 19 18 16 35 35 H 1.08001 * 126.83481 * 179.97438 * 24 22 20 36 36 H 1.08998 * 109.59143 * 353.36785 * 25 9 7 37 37 H 1.09001 * 109.58916 * 113.80207 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4001 5 1 1.4477 2.6527 -0.7000 6 1 3.5478 1.4401 -0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.5131 -2.1128 -0.2994 9 7 3.3252 -1.2334 0.3814 10 6 3.8390 -0.2827 1.3768 11 6 4.5287 -1.0746 2.4981 12 6 5.5973 -1.9852 1.8890 13 6 4.9366 -2.9809 0.9327 14 1 4.1957 -3.5689 1.4745 15 7 5.9562 -3.8724 0.3742 16 6 5.6103 -5.0970 -0.0698 17 8 4.4519 -5.4622 -0.0063 18 6 6.6349 -5.9930 -0.6317 19 6 7.9688 -5.7278 -0.7759 20 7 8.5597 -6.8056 -1.3277 21 1 9.5052 -6.8752 -1.5328 22 6 7.6370 -7.7834 -1.5616 23 35 7.9957 -9.4736 -2.3299 24 6 6.4299 -7.3479 -1.1558 25 6 4.2503 -2.2143 -0.2023 26 1 -0.4851 -0.8368 -0.0738 27 1 4.5569 0.3881 0.9047 28 1 3.0128 0.2953 1.7905 29 1 3.7917 -1.6805 3.0252 30 1 4.9968 -0.3811 3.1967 31 1 6.1072 -2.5290 2.6841 32 1 6.3200 -1.3805 1.3412 33 1 6.8801 -3.5813 0.3238 34 1 8.4647 -4.8110 -0.4932 35 1 5.4961 -7.8881 -1.2064 36 1 3.6956 -2.9110 -0.8307 37 1 5.0011 -1.6977 -0.8004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007966175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:49 Heat of formation + Delta-G solvation = 3.212502 kcal Electronic energy + Delta-G solvation = -21401.318163 eV Core-core repulsion = 18031.851493 eV Total energy + Delta-G solvation = -3369.466670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.27832 -40.60030 -38.96315 -35.98655 -34.37800 -32.91602 -32.58529 -32.34113 -30.76757 -29.03118 -26.88710 -24.98360 -23.49852 -23.20783 -21.68693 -21.34136 -20.58697 -19.47820 -19.32344 -17.44624 -17.18607 -16.59689 -16.27138 -15.92597 -15.48651 -15.32505 -15.17489 -14.93791 -14.76689 -14.45991 -14.15928 -13.97331 -13.66020 -13.38023 -13.32748 -12.68137 -12.51242 -12.06266 -12.01525 -11.68926 -11.59852 -11.54445 -11.32933 -11.25751 -11.02154 -10.66872 -10.23603 -9.95960 -9.40271 -9.10096 -8.48389 -5.60507 0.18733 0.67125 0.98467 1.42404 1.58904 1.77426 2.07718 2.40178 2.49994 2.55168 3.11035 3.43370 3.82062 3.88019 4.01662 4.07305 4.13781 4.27535 4.35716 4.42878 4.58599 4.69930 4.74390 4.78312 4.95688 5.03996 5.09406 5.14512 5.24239 5.33544 5.41734 5.51635 5.59160 5.75959 6.23100 6.31455 6.70853 6.92655 7.39081 7.53824 8.05595 8.81136 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.002316 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.358208 B =12084.849413 C =12577.757176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 1.118 2.882 4 H -0.260 1.260 5 H -0.308 1.308 6 H -0.260 1.260 7 C -0.336 4.336 8 H 0.009 0.991 9 N -0.619 5.619 10 C 0.110 3.890 11 C -0.128 4.128 12 C -0.103 4.103 13 C 0.139 3.861 14 H 0.043 0.957 15 N -0.700 5.700 16 C 0.581 3.419 17 O -0.603 6.603 18 C -0.260 4.260 19 C 0.115 3.885 20 N -0.517 5.517 21 H 0.442 0.558 22 C -0.005 4.005 23 Br 0.018 6.982 24 C -0.119 4.119 25 C 0.144 3.856 26 H 0.243 0.757 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.418 0.582 34 H 0.234 0.766 35 H 0.137 0.863 36 H 0.016 0.984 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.193 -14.472 -1.041 34.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.267 4.267 3 Si 0.941 3.059 4 H -0.185 1.185 5 H -0.237 1.237 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.027 0.973 9 N -0.345 5.345 10 C -0.014 4.014 11 C -0.167 4.167 12 C -0.141 4.141 13 C 0.033 3.967 14 H 0.062 0.938 15 N -0.352 5.352 16 C 0.371 3.629 17 O -0.485 6.485 18 C -0.270 4.270 19 C -0.025 4.025 20 N -0.115 5.115 21 H 0.284 0.716 22 C -0.192 4.192 23 Br 0.102 6.898 24 C -0.146 4.146 25 C 0.017 3.983 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.256 0.744 34 H 0.250 0.750 35 H 0.155 0.845 36 H 0.034 0.966 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 30.494 -13.811 -1.262 33.500 hybrid contribution -0.683 -1.929 -0.374 2.080 sum 29.811 -15.740 -1.636 33.751 Atomic orbital electron populations 1.71020 1.07466 1.28850 1.52561 1.27805 0.96484 1.05314 0.97086 0.83147 0.74108 0.70716 0.77921 1.18527 1.23704 1.18454 1.20043 0.87975 0.93201 1.45336 0.97275 1.44365 1.05878 1.38559 1.45712 1.21733 0.97243 0.92363 0.90041 1.22014 0.97866 0.99062 0.97773 1.21645 0.97762 0.96401 0.98310 1.21242 0.90138 0.90547 0.94805 0.93838 1.45568 1.12280 1.14194 1.63170 1.17879 0.87155 0.81460 0.76454 1.90802 1.22624 1.76532 1.58519 1.20270 0.94131 0.96772 1.15861 1.22684 0.91207 0.92865 0.95772 1.41544 1.11149 1.11002 1.47853 0.71632 1.21702 0.91342 0.92365 1.13809 1.96802 1.95498 1.16083 1.81455 1.21944 0.96588 0.94757 1.01356 1.21285 0.92094 0.90727 0.94172 0.94757 0.92805 0.92991 0.94027 0.87921 0.89016 0.88684 0.74391 0.75018 0.84534 0.96570 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.09 13.70 21.65 0.30 -63.80 16 2 C -0.07 -4.53 5.24 84.86 0.44 -4.08 16 3 Si 1.12 53.43 24.73 68.60 1.70 55.13 16 4 H -0.26 -10.96 6.56 99.48 0.65 -10.31 16 5 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 6 H -0.26 -11.21 6.80 99.48 0.68 -10.53 16 7 C -0.34 -20.82 9.88 84.03 0.83 -19.99 16 8 H 0.01 0.66 8.06 -2.91 -0.02 0.64 16 9 N -0.62 -30.98 2.72 -698.27 -1.90 -32.87 16 10 C 0.11 4.46 4.23 86.51 0.37 4.82 16 11 C -0.13 -3.90 6.10 30.82 0.19 -3.72 16 12 C -0.10 -2.52 5.35 30.62 0.16 -2.36 16 13 C 0.14 4.71 2.60 45.07 0.12 4.82 16 14 H 0.04 1.88 7.58 -2.38 -0.02 1.86 16 15 N -0.70 -17.74 5.07 -445.56 -2.26 -20.00 16 16 C 0.58 18.63 7.77 86.61 0.67 19.30 16 17 O -0.60 -27.38 16.64 -4.13 -0.07 -27.45 16 18 C -0.26 -6.02 6.29 -19.04 -0.12 -6.14 16 19 C 0.11 1.26 11.40 83.90 0.96 2.21 16 20 N -0.52 -5.00 5.90 -189.55 -1.12 -6.11 16 21 H 0.44 0.90 8.96 -92.71 -0.83 0.07 16 22 C 0.00 -0.08 7.61 83.14 0.63 0.55 16 23 Br 0.02 0.26 34.08 -20.37 -0.69 -0.43 16 24 C -0.12 -2.90 10.91 23.65 0.26 -2.64 16 25 C 0.14 6.19 6.09 86.36 0.53 6.71 16 26 H 0.24 16.71 8.73 -92.71 -0.81 15.90 16 27 H 0.05 1.92 7.10 -2.38 -0.02 1.90 16 28 H 0.05 2.34 4.76 -2.39 -0.01 2.33 16 29 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.42 5.87 7.54 -92.71 -0.70 5.17 16 34 H 0.23 0.05 7.45 -2.91 -0.02 0.03 16 35 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.02 0.81 7.93 -2.39 -0.02 0.79 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -90.35 323.67 0.46 -89.90 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -0.53 Total: 6.15 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.04 Total: -0.50 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -4.98 Total: -122.79 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.07 Total: -27.45 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 1.70 Total: 55.13 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -0.69 Total: -0.43 kcal Total: -90.35 0.46 -89.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007966175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.109 kcal (2) G-P(sol) polarization free energy of solvation -90.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds