Wall clock time and date at job start Sat Apr 11 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48505 * 109.47181 * 239.99778 * 3 2 1 5 5 H 1.48500 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46886 * 120.00162 * 3 2 1 7 7 C 1.38819 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99592 * 163.07009 * 7 2 1 9 9 N 1.36942 * 119.99744 * 343.06993 * 7 2 1 10 10 C 1.46923 * 120.63344 * 331.83943 * 9 7 2 11 11 C 1.53189 * 108.77439 * 233.63187 * 10 9 7 12 12 C 1.53045 * 109.33767 * 305.34450 * 11 10 9 13 13 C 1.53113 * 109.50013 * 61.34951 * 12 11 10 14 14 H 1.08999 * 109.48664 * 58.61688 * 13 12 11 15 15 N 1.46493 * 109.51329 * 178.68082 * 13 12 11 16 16 C 1.34777 * 120.00279 * 204.87211 * 15 13 12 17 17 O 1.21634 * 119.99855 * 0.02562 * 16 15 13 18 18 C 1.47256 * 120.00350 * 180.02562 * 16 15 13 19 19 C 1.36747 * 126.93692 * 359.68038 * 18 16 15 20 20 N 1.34729 * 108.41314 * 179.83846 * 19 18 16 21 21 H 0.97007 * 124.85735 * 180.13452 * 20 19 18 22 22 C 1.36462 * 110.29335 * 0.44718 * 20 19 18 23 23 Br 1.89097 * 125.58352 * 179.72811 * 22 20 19 24 24 C 1.34587 * 108.83744 * 359.72682 * 22 20 19 25 25 C 1.46924 * 120.62606 * 151.85724 * 9 7 2 26 26 H 0.97009 * 119.99606 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.58984 * 113.83863 * 10 9 7 28 28 H 1.09002 * 109.70288 * 353.48888 * 10 9 7 29 29 H 1.09001 * 109.50338 * 65.31502 * 11 10 9 30 30 H 1.08996 * 109.49767 * 185.37944 * 11 10 9 31 31 H 1.08995 * 109.45812 * 181.40062 * 12 11 10 32 32 H 1.08992 * 109.46475 * 301.36592 * 12 11 10 33 33 H 0.97003 * 120.00129 * 24.87201 * 15 13 12 34 34 H 1.08009 * 125.79405 * 0.02562 * 19 18 16 35 35 H 1.07997 * 126.84074 * 179.97438 * 24 22 20 36 36 H 1.09002 * 109.59131 * 246.16015 * 25 9 7 37 37 H 1.09005 * 109.58605 * 6.44130 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2729 9 7 1.3699 -2.3626 0.3443 10 6 0.2261 -2.3409 1.2662 11 6 0.4980 -3.3202 2.4124 12 6 0.8126 -4.7020 1.8345 13 6 2.0682 -4.6175 0.9623 14 1 2.9031 -4.2536 1.5611 15 7 2.3876 -5.9461 0.4344 16 6 3.6535 -6.2442 0.0805 17 8 4.5307 -5.4102 0.1998 18 6 3.9745 -7.5796 -0.4507 19 6 3.1070 -8.6200 -0.6376 20 7 3.7947 -9.6617 -1.1446 21 1 3.4098 -10.5232 -1.3700 22 6 5.1115 -9.3341 -1.2894 23 35 6.4628 -10.4766 -1.9561 24 6 5.2909 -8.0646 -0.8801 25 6 1.8140 -3.6529 -0.2003 26 1 -0.4850 0.8402 0.0004 27 1 -0.6771 -2.6416 0.7351 28 1 0.0964 -1.3358 1.6673 29 1 1.3477 -2.9686 2.9976 30 1 -0.3822 -3.3852 3.0519 31 1 0.9820 -5.4062 2.6490 32 1 -0.0275 -5.0424 1.2292 33 1 1.6881 -6.6115 0.3396 34 1 2.0493 -8.6076 -0.4190 35 1 6.2192 -7.5128 -0.8693 36 1 1.0405 -4.0606 -0.8510 37 1 2.7333 -3.5125 -0.7691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007966176.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:54 Heat of formation + Delta-G solvation = 30.994615 kcal Electronic energy + Delta-G solvation = -21319.150291 eV Core-core repulsion = 17950.888344 eV Total energy + Delta-G solvation = -3368.261947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45168 -39.16455 -37.14937 -34.21825 -32.50513 -32.06201 -31.37369 -30.40902 -29.17338 -27.83782 -25.23214 -23.53662 -22.06247 -21.50813 -20.82852 -19.72060 -19.22983 -18.52749 -16.70017 -16.25789 -15.42397 -15.16954 -14.66560 -14.34730 -14.32802 -13.89127 -13.73259 -13.34891 -13.22789 -12.97787 -12.58484 -12.35434 -12.25003 -11.76173 -11.36360 -11.03834 -10.89401 -10.83639 -10.73553 -10.22761 -10.20214 -9.91691 -9.85198 -9.58100 -9.47742 -9.17837 -8.75772 -8.60576 -8.33316 -6.61355 -5.73419 -3.15563 0.93579 1.50665 1.92139 2.86279 3.45338 3.49426 3.50651 3.55915 3.68445 4.55095 4.57252 4.82757 5.08313 5.31215 5.41046 5.47137 5.59035 5.63511 5.68173 5.77459 6.13570 6.19834 6.21656 6.29359 6.38061 6.57385 6.65677 6.75067 6.75614 6.86125 6.90592 7.08070 7.40102 7.68805 7.87397 7.88551 8.50366 8.61363 9.27718 9.90002 10.45786 11.35363 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.024519 B = 0.002305 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.719476 B =12144.133349 C =12955.379173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.168 3.832 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.127 3.873 14 H 0.087 0.913 15 N -0.720 5.720 16 C 0.584 3.416 17 O -0.535 6.535 18 C -0.214 4.214 19 C 0.067 3.933 20 N -0.537 5.537 21 H 0.420 0.580 22 C -0.009 4.009 23 Br 0.003 6.997 24 C -0.085 4.085 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.018 0.982 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.390 0.610 34 H 0.182 0.818 35 H 0.159 0.841 36 H 0.016 0.984 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -26.460 -1.382 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.022 3.978 14 H 0.105 0.895 15 N -0.371 5.371 16 C 0.370 3.630 17 O -0.412 6.412 18 C -0.225 4.225 19 C -0.071 4.071 20 N -0.135 5.135 21 H 0.258 0.742 22 C -0.196 4.196 23 Br 0.087 6.913 24 C -0.113 4.113 25 C 0.015 3.985 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.223 0.777 34 H 0.199 0.801 35 H 0.177 0.823 36 H 0.034 0.966 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.924 -26.221 -1.601 27.167 hybrid contribution -0.520 0.244 -0.077 0.579 sum 6.404 -25.977 -1.679 26.807 Atomic orbital electron populations 1.70032 1.05238 1.25537 1.54204 1.25025 0.95296 0.98379 1.00933 0.86349 0.78890 0.83185 0.78271 1.20835 1.21695 1.20964 1.19201 0.92686 0.84643 1.41391 0.91575 1.43987 1.35627 1.01244 1.50194 1.20826 0.88605 0.98422 0.87966 1.22182 1.00419 0.95279 1.00088 1.21684 0.96756 0.98551 0.98226 1.21738 0.97769 0.81291 0.96985 0.89535 1.45954 1.08856 1.16043 1.66216 1.17264 0.82631 0.85651 0.77421 1.90819 1.46954 1.49305 1.54170 1.20615 0.93899 0.95066 1.12924 1.22110 0.97979 0.86878 1.00095 1.41513 1.06416 1.14541 1.51002 0.74218 1.21758 0.85191 0.96833 1.15847 1.96775 1.45372 1.63228 1.85973 1.21967 0.98006 0.91501 0.99801 1.21188 0.97953 0.86736 0.92624 0.93666 0.96367 0.89337 0.92398 0.92790 0.93117 0.92333 0.77659 0.80093 0.82337 0.96584 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.55 11.19 55.49 0.62 -25.93 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -7.12 9.58 -15.05 -0.14 -7.27 16 8 H 0.07 1.90 7.88 -52.49 -0.41 1.49 16 9 N -0.59 -15.13 2.99 -172.32 -0.52 -15.64 16 10 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 11 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 12 C -0.11 -1.81 5.36 -26.65 -0.14 -1.96 16 13 C 0.13 2.30 2.60 -67.78 -0.18 2.13 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 15 N -0.72 -10.32 5.07 -54.79 -0.28 -10.60 16 16 C 0.58 9.39 7.77 -12.60 -0.10 9.30 16 17 O -0.54 -11.19 16.63 5.25 0.09 -11.10 16 18 C -0.21 -2.66 6.29 -103.35 -0.65 -3.31 16 19 C 0.07 0.54 11.40 -16.82 -0.19 0.35 16 20 N -0.54 -3.81 5.91 -11.26 -0.07 -3.88 16 21 H 0.42 1.61 8.96 -40.82 -0.37 1.25 16 22 C -0.01 -0.09 7.61 -16.78 -0.13 -0.22 16 23 Br 0.00 0.03 34.08 -68.01 -2.32 -2.29 16 24 C -0.09 -1.03 10.91 -37.45 -0.41 -1.44 16 25 C 0.14 3.15 6.09 -3.71 -0.02 3.13 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.39 4.05 7.55 -40.82 -0.31 3.75 16 34 H 0.18 0.79 7.45 -52.48 -0.39 0.40 16 35 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -34.15 329.36 -9.46 -43.60 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.69 Total: 1.70 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.23 Total: 1.87 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.24 Total: -56.05 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.32 Total: -2.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.15 -9.46 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007966176.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.599 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds