Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00062 * 2 1 4 4 H 1.48502 * 109.47435 * 264.66092 * 3 2 1 5 5 H 1.48505 * 109.47263 * 24.66112 * 3 2 1 6 6 H 1.48505 * 109.47209 * 144.65968 * 3 2 1 7 7 C 1.38808 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00275 * 339.50763 * 7 2 1 9 9 N 1.36936 * 120.00042 * 159.50903 * 7 2 1 10 10 C 1.47422 * 125.64881 * 335.90691 * 9 7 2 11 11 C 1.54908 * 104.83463 * 204.14731 * 10 9 7 12 12 C 1.55154 * 101.58205 * 322.99118 * 11 10 9 13 13 C 1.47025 * 125.64978 * 155.92901 * 9 7 2 14 14 H 1.08995 * 110.00985 * 59.43480 * 13 9 7 15 15 C 1.53002 * 109.88288 * 298.33861 * 13 9 7 16 16 N 1.46494 * 109.46984 * 62.09198 * 15 13 9 17 17 C 1.34781 * 120.00098 * 185.98537 * 16 15 13 18 18 O 1.21697 * 119.99825 * 0.02562 * 17 16 15 19 19 C 1.46672 * 120.00004 * 180.02562 * 17 16 15 20 20 C 1.37889 * 126.22134 * 179.69313 * 19 17 16 21 21 C 1.39879 * 107.08648 * 179.84748 * 20 19 17 22 22 Br 1.89100 * 126.07091 * 180.15845 * 21 20 19 23 23 C 1.35505 * 107.85580 * 0.41820 * 21 20 19 24 24 N 1.35598 * 108.85445 * 359.73685 * 23 21 20 25 25 H 0.96996 * 125.67276 * 180.02562 * 24 23 21 26 26 H 0.97003 * 120.00132 * 359.97438 * 1 2 3 27 27 H 1.09006 * 110.36649 * 85.31074 * 10 9 7 28 28 H 1.08998 * 110.46203 * 323.03630 * 10 9 7 29 29 H 1.09005 * 111.00527 * 204.91771 * 11 10 9 30 30 H 1.08996 * 111.00554 * 81.06521 * 11 10 9 31 31 H 1.09003 * 110.72264 * 277.13543 * 12 11 10 32 32 H 1.08997 * 110.72119 * 153.86271 * 12 11 10 33 33 H 1.08996 * 109.47416 * 302.09098 * 15 13 9 34 34 H 1.08999 * 109.46993 * 182.08942 * 15 13 9 35 35 H 0.97003 * 120.00601 * 5.71199 * 16 15 13 36 36 H 1.07991 * 126.45491 * 359.97438 * 20 19 17 37 37 H 1.08000 * 125.56882 * 179.72224 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6106 1.9813 -1.3940 5 1 1.3958 2.6826 0.5842 6 1 3.4868 1.4753 0.8099 7 6 2.0102 -1.2021 -0.0005 8 1 1.5215 -2.1080 0.3265 9 7 3.3146 -1.2395 -0.4157 10 6 3.9548 -0.2720 -1.3252 11 6 5.1405 -1.0445 -1.9553 12 6 5.6236 -1.9045 -0.7576 13 6 4.3084 -2.2515 -0.0285 14 1 3.9683 -3.2424 -0.3291 15 6 4.5271 -2.2136 1.4853 16 7 3.2732 -2.5418 2.1681 17 6 3.1935 -2.4524 3.5106 18 8 4.1631 -2.0986 4.1555 19 6 1.9383 -2.7815 4.1943 20 6 1.7165 -2.7407 5.5546 21 6 0.3885 -3.1260 5.7661 22 35 -0.4810 -3.2519 7.4407 23 6 -0.1624 -3.3985 4.5585 24 7 0.7694 -3.1928 3.5952 25 1 0.6346 -3.3150 2.6425 26 1 -0.4850 0.8401 0.0004 27 1 4.3182 0.5907 -0.7667 28 1 3.2549 0.0450 -2.0983 29 1 5.9220 -0.3598 -2.2850 30 1 4.8031 -1.6749 -2.7780 31 1 6.2831 -1.3273 -0.1096 32 1 6.1205 -2.8091 -1.1080 33 1 4.8513 -1.2158 1.7808 34 1 5.2915 -2.9403 1.7603 35 1 2.4991 -2.8196 1.6538 36 1 2.4324 -2.4617 6.3134 37 1 -1.1778 -3.7262 4.3908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028010322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = 34.659552 kcal Electronic energy + Delta-G solvation = -22017.410229 eV Core-core repulsion = 18649.307205 eV Total energy + Delta-G solvation = -3368.103023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.18634 -38.96720 -37.82420 -34.13859 -32.80967 -32.12270 -30.12449 -30.07102 -29.73378 -28.28257 -25.17140 -24.07952 -22.27827 -21.05371 -20.04220 -19.89204 -19.80328 -18.45754 -16.97540 -15.93417 -15.63401 -15.31576 -15.11703 -14.89430 -13.90591 -13.81643 -13.49335 -13.42000 -13.11203 -12.74467 -12.65823 -12.62953 -12.53950 -11.80739 -11.41775 -11.29166 -11.06405 -10.98849 -10.82187 -10.61206 -10.16402 -10.15788 -10.10828 -9.71921 -9.56947 -8.86743 -8.75713 -8.56116 -8.09749 -7.20478 -6.17137 -3.50931 1.64480 1.84762 2.51933 3.23917 3.25802 3.40060 3.43475 3.61256 3.76582 4.39480 4.77834 5.02189 5.06761 5.14122 5.17918 5.28299 5.29319 5.45721 5.67904 5.78601 5.82051 5.97923 5.99651 6.02602 6.15779 6.21400 6.29658 6.54762 6.55344 6.67487 6.72444 6.74327 6.92757 7.35888 7.51768 7.97660 8.06353 8.54789 8.62391 9.47287 10.00502 10.97771 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.003337 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.894850 B = 8387.813211 C = 9274.628918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.049 0.951 15 C 0.115 3.885 16 N -0.700 5.700 17 C 0.584 3.416 18 O -0.546 6.546 19 C -0.028 4.028 20 C -0.091 4.091 21 C -0.184 4.184 22 Br -0.038 7.038 23 C 0.062 3.938 24 N -0.519 5.519 25 H 0.428 0.572 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.404 0.596 36 H 0.153 0.847 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 -8.779 6.955 11.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.168 4.168 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.328 5.328 10 C -0.013 4.013 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.037 3.963 14 H 0.067 0.933 15 C -0.011 4.011 16 N -0.351 5.351 17 C 0.370 3.630 18 O -0.424 6.424 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.270 4.270 22 Br 0.046 6.954 23 C -0.079 4.079 24 N -0.114 5.114 25 H 0.268 0.732 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.171 0.829 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.708 -8.483 7.823 11.665 hybrid contribution -0.026 1.032 -0.979 1.422 sum 1.682 -7.451 6.844 10.256 Atomic orbital electron populations 1.69782 1.05554 1.27048 1.52156 1.25068 0.95162 0.97666 0.98927 0.86883 0.79356 0.84239 0.77830 1.21130 1.23013 1.20031 1.18228 0.83434 0.94037 1.41614 0.90128 1.44840 1.07489 1.29029 1.51419 1.21942 0.93735 0.92695 0.92907 1.22719 0.98052 0.98803 0.97350 1.22518 0.96455 0.99893 0.97303 1.21337 0.89894 0.94298 0.90756 0.93327 1.21975 0.84941 1.00412 0.93766 1.45934 1.16000 1.67437 1.05738 1.16971 0.85772 0.77967 0.82287 1.90790 1.36805 1.48747 1.66107 1.20555 0.87918 1.12972 0.92795 1.21068 0.94728 1.02296 0.93728 1.20877 0.96880 1.18120 0.91115 1.96548 1.78164 1.98008 1.22686 1.21827 0.95370 1.04141 0.86548 1.42131 1.09574 1.49865 1.09879 0.73192 0.92468 0.95800 0.92397 0.91631 0.91221 0.91266 0.91218 0.91594 0.92591 0.75809 0.82909 0.80419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 13.97 55.49 0.78 -24.62 16 2 C 0.03 0.86 5.45 -17.43 -0.09 0.77 16 3 Si 0.89 22.01 24.33 -169.99 -4.14 17.87 16 4 H -0.28 -6.80 6.68 56.52 0.38 -6.42 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 6 H -0.27 -6.95 6.75 56.52 0.38 -6.57 16 7 C -0.25 -6.00 8.87 -15.06 -0.13 -6.14 16 8 H 0.08 1.96 6.55 -52.49 -0.34 1.62 16 9 N -0.60 -12.82 2.87 -162.57 -0.47 -13.29 16 10 C 0.11 2.24 4.73 -2.53 -0.01 2.23 16 11 C -0.13 -1.97 7.08 -24.58 -0.17 -2.15 16 12 C -0.12 -1.75 6.48 -24.90 -0.16 -1.91 16 13 C 0.14 2.49 3.34 -66.95 -0.22 2.26 16 14 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 15 C 0.11 2.03 5.18 -4.04 -0.02 2.01 16 16 N -0.70 -12.67 4.81 -61.62 -0.30 -12.97 16 17 C 0.58 11.17 7.79 -12.85 -0.10 11.07 16 18 O -0.55 -11.89 16.87 5.19 0.09 -11.80 16 19 C -0.03 -0.47 7.05 -81.98 -0.58 -1.05 16 20 C -0.09 -1.46 10.63 -39.10 -0.42 -1.88 16 21 C -0.18 -2.62 6.53 -39.94 -0.26 -2.88 16 22 Br -0.04 -0.47 34.08 -68.01 -2.32 -2.78 16 23 C 0.06 0.80 11.86 -16.86 -0.20 0.60 16 24 N -0.52 -7.40 5.99 -9.36 -0.06 -7.46 16 25 H 0.43 5.60 8.19 -40.82 -0.33 5.27 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.52 5.45 -51.93 -0.28 0.24 16 28 H 0.06 1.24 7.17 -51.93 -0.37 0.87 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.95 7.85 -51.93 -0.41 0.55 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 7.09 5.07 -40.82 -0.21 6.88 16 36 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -30.36 321.99 -8.44 -38.80 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.51 Total: 8.45 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.38 Total: 2.94 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.04 Total: -58.34 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.32 Total: -2.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.36 -8.44 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028010322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.464 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds