Wall clock time and date at job start Sat Apr 11 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99785 * 2 1 4 4 H 1.48498 * 109.47292 * 240.00220 * 3 2 1 5 5 H 1.48501 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46775 * 120.00498 * 3 2 1 7 7 C 1.38813 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00316 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.65173 * 14.65908 * 9 7 2 11 11 C 1.54911 * 104.92922 * 155.83959 * 10 9 7 12 12 C 1.55442 * 101.44776 * 37.00640 * 11 10 9 13 13 C 1.47022 * 125.64936 * 194.69117 * 9 7 2 14 14 H 1.09004 * 109.88152 * 300.45541 * 13 9 7 15 15 C 1.52995 * 109.88250 * 61.61637 * 13 9 7 16 16 N 1.46504 * 109.47162 * 183.75215 * 15 13 9 17 17 C 1.34776 * 120.00076 * 185.66222 * 16 15 13 18 18 O 1.21695 * 119.99853 * 359.97438 * 17 16 15 19 19 C 1.46676 * 119.99982 * 179.97438 * 17 16 15 20 20 C 1.37887 * 126.22151 * 179.68904 * 19 17 16 21 21 C 1.39884 * 107.08736 * 179.87973 * 20 19 17 22 22 Br 1.89096 * 126.07031 * 180.10624 * 21 20 19 23 23 C 1.35504 * 107.85126 * 0.38206 * 21 20 19 24 24 N 1.35599 * 108.85811 * 359.76094 * 23 21 20 25 25 H 0.97006 * 125.67245 * 179.97438 * 24 23 21 26 26 H 0.96994 * 119.99803 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.36886 * 274.73760 * 10 9 7 28 28 H 1.09004 * 110.36338 * 36.94675 * 10 9 7 29 29 H 1.08996 * 111.00122 * 155.14411 * 11 10 9 30 30 H 1.09003 * 111.00200 * 278.99546 * 11 10 9 31 31 H 1.09007 * 110.70398 * 206.14176 * 12 11 10 32 32 H 1.09003 * 110.70476 * 82.89152 * 12 11 10 33 33 H 1.09008 * 109.47209 * 303.74906 * 15 13 9 34 34 H 1.08996 * 109.47315 * 63.75037 * 15 13 9 35 35 H 0.97000 * 120.00053 * 5.65463 * 16 15 13 36 36 H 1.08000 * 126.45823 * 0.02562 * 20 19 17 37 37 H 1.08000 * 125.56784 * 179.78717 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1078 -2.5527 -0.3032 11 6 -0.2496 -4.0208 -0.7768 12 6 0.7644 -4.7442 0.1530 13 6 1.8982 -3.7080 0.3019 14 1 2.7011 -3.9335 -0.4000 15 6 2.4351 -3.7264 1.7345 16 7 3.0828 -5.0141 1.9967 17 6 3.5313 -5.3031 3.2343 18 8 3.3986 -4.4944 4.1339 19 6 4.1793 -6.5925 3.4970 20 6 4.6883 -7.0173 4.7060 21 6 5.2082 -8.3003 4.5051 22 35 6.0352 -9.3842 5.8154 23 6 5.0195 -8.6258 3.2034 24 7 4.3951 -7.5961 2.5801 25 1 4.1429 -7.5708 1.6438 26 1 -0.4849 0.8400 0.0004 27 1 -0.7064 -2.3832 0.5918 28 1 -0.4093 -1.8676 -1.0956 29 1 -1.2630 -4.3876 -0.6137 30 1 0.0377 -4.1232 -1.8233 31 1 1.1344 -5.6561 -0.3158 32 1 0.3122 -4.9628 1.1204 33 1 3.1603 -2.9225 1.8611 34 1 1.6107 -3.5854 2.4333 35 1 3.1888 -5.6586 1.2796 36 1 4.6841 -6.4647 5.6339 37 1 5.3174 -9.5540 2.7384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028010323.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:59 Heat of formation + Delta-G solvation = 32.643910 kcal Electronic energy + Delta-G solvation = -21189.020233 eV Core-core repulsion = 17820.829804 eV Total energy + Delta-G solvation = -3368.190428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.60012 -39.12079 -37.61995 -34.46398 -32.62698 -32.41281 -30.39473 -29.93905 -29.27972 -28.22268 -25.06657 -24.18154 -22.50279 -20.51809 -20.39763 -20.20925 -19.85910 -18.78601 -16.81853 -15.94615 -15.88086 -15.42803 -14.88789 -14.43893 -14.27818 -14.09882 -13.89132 -13.51865 -13.05362 -12.99968 -12.89695 -12.15902 -11.95788 -11.82156 -11.41436 -11.31986 -11.00044 -10.81480 -10.45251 -10.35287 -10.20461 -10.10613 -9.95555 -9.86658 -9.74824 -9.13199 -8.88421 -8.64183 -8.48593 -6.90739 -5.82084 -3.19462 1.23176 1.51856 2.14445 2.79144 3.26804 3.35475 3.38327 3.42887 3.43687 4.43941 4.60086 4.74237 4.90954 5.23987 5.30717 5.33892 5.43532 5.54728 5.63221 5.72053 5.94515 6.02063 6.14111 6.16624 6.34546 6.36744 6.45469 6.49329 6.59225 6.70637 6.90258 6.96256 7.44864 7.54290 7.59960 7.73428 8.19293 8.26811 9.11540 9.72048 10.38734 11.29735 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.024818 B = 0.002256 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.964200 B =12409.419223 C =13186.985254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.001 3.999 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.587 5.587 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.036 0.964 15 C 0.109 3.891 16 N -0.721 5.721 17 C 0.580 3.420 18 O -0.524 6.524 19 C -0.033 4.033 20 C -0.085 4.085 21 C -0.181 4.181 22 Br -0.031 7.031 23 C 0.058 3.942 24 N -0.530 5.530 25 H 0.423 0.577 26 H 0.255 0.745 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.389 0.611 36 H 0.157 0.843 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -22.688 5.034 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.016 4.016 16 N -0.371 5.371 17 C 0.366 3.634 18 O -0.399 6.399 19 C -0.147 4.147 20 C -0.112 4.112 21 C -0.267 4.267 22 Br 0.053 6.947 23 C -0.082 4.082 24 N -0.126 5.126 25 H 0.262 0.738 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.221 0.779 36 H 0.174 0.826 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.449 -22.114 5.975 24.779 hybrid contribution 0.250 0.736 -0.977 1.248 sum 9.699 -21.378 4.998 24.001 Atomic orbital electron populations 1.69923 1.05055 1.25565 1.55481 1.24927 0.95687 0.97938 1.01142 0.86220 0.78621 0.82973 0.78073 1.21042 1.21504 1.20853 1.18927 0.90363 0.82142 1.45190 0.90680 1.44474 1.06390 1.00940 1.79355 1.21465 0.84753 0.90174 0.98931 1.23054 0.97536 0.99638 0.98485 1.22664 0.97185 0.96847 0.99775 1.21128 0.94486 0.88301 0.91755 0.94604 1.22344 0.97252 0.82471 0.99539 1.46048 1.60509 1.20673 1.09881 1.17005 0.78602 0.84494 0.83330 1.90882 1.56801 1.48046 1.44213 1.20684 1.11613 0.91890 0.90487 1.21199 0.98935 0.93659 0.97375 1.20992 1.13565 0.98157 0.94004 1.96613 1.79581 1.66195 1.52301 1.21844 1.00417 0.93804 0.92118 1.42060 1.45473 1.13517 1.11576 0.73820 0.93456 0.95523 0.90894 0.92256 0.92287 0.92602 0.91767 0.91117 0.91192 0.77880 0.82552 0.80261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.24 10.57 55.49 0.59 -25.65 16 2 C 0.00 0.02 5.47 -17.43 -0.10 -0.08 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.38 9.73 -15.06 -0.15 -6.53 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.59 -14.14 3.13 -162.58 -0.51 -14.65 16 10 C 0.17 3.98 5.41 -2.53 -0.01 3.96 16 11 C -0.15 -2.60 7.11 -24.43 -0.17 -2.77 16 12 C -0.13 -1.98 6.18 -24.75 -0.15 -2.13 16 13 C 0.15 2.84 3.20 -66.96 -0.21 2.63 16 14 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 15 C 0.11 2.00 5.09 -4.04 -0.02 1.98 16 16 N -0.72 -10.07 5.34 -61.62 -0.33 -10.40 16 17 C 0.58 8.95 7.79 -12.85 -0.10 8.85 16 18 O -0.52 -10.43 16.87 5.19 0.09 -10.34 16 19 C -0.03 -0.40 7.05 -81.98 -0.58 -0.97 16 20 C -0.08 -1.03 10.63 -39.09 -0.42 -1.45 16 21 C -0.18 -1.83 6.53 -39.94 -0.26 -2.09 16 22 Br -0.03 -0.28 34.08 -68.01 -2.32 -2.60 16 23 C 0.06 0.44 11.86 -16.86 -0.20 0.24 16 24 N -0.53 -4.20 5.99 -9.36 -0.06 -4.26 16 25 H 0.42 2.03 8.19 -40.82 -0.33 1.69 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 28 H 0.07 1.89 6.93 -51.93 -0.36 1.53 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 33 H 0.07 1.49 7.88 -51.92 -0.41 1.08 16 34 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.39 3.98 7.51 -40.82 -0.31 3.68 16 36 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 332.14 15.07 5.01 5.01 Total: -1.00 -32.32 332.14 -9.66 -41.98 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.73 Total: 2.50 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.37 Total: 1.64 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.31 Total: -54.96 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.32 Total: -2.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.32 -9.66 -41.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028010323.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.623 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds