Wall clock time and date at job start Sat Apr 11 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99782 * 2 1 4 4 H 1.48497 * 109.46869 * 269.99594 * 3 2 1 5 5 H 1.48497 * 109.47436 * 29.99613 * 3 2 1 6 6 H 1.48507 * 109.46956 * 150.00156 * 3 2 1 7 7 C 1.38806 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.47865 * 126.94528 * 0.02562 * 9 7 2 11 11 C 1.56017 * 105.10662 * 181.98270 * 10 9 7 12 12 H 1.08999 * 116.25445 * 159.68398 * 11 10 9 13 13 C 1.57087 * 99.60810 * 32.80672 * 11 10 9 14 14 C 1.49295 * 126.94517 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.15272 * 15.85524 * 14 9 7 16 16 C 1.56005 * 104.31612 * 246.63510 * 14 9 7 17 17 N 1.47870 * 105.11112 * 289.11191 * 16 14 9 18 18 C 1.34773 * 126.93924 * 181.87628 * 17 16 14 19 19 O 1.21532 * 119.99961 * 179.68104 * 18 17 16 20 20 C 1.47993 * 120.00546 * 359.68586 * 18 17 16 21 21 C 1.39982 * 120.94167 * 270.00454 * 20 18 17 22 22 Cl 1.73599 * 120.50751 * 359.97438 * 21 20 18 23 23 C 1.38292 * 118.97662 * 180.27208 * 21 20 18 24 24 N 1.31794 * 120.91530 * 359.47030 * 23 21 20 25 25 C 1.31782 * 122.09546 * 0.53991 * 24 23 21 26 26 C 1.38289 * 120.91517 * 359.73200 * 25 24 23 27 27 Cl 1.73607 * 120.51146 * 179.97438 * 26 25 24 28 28 H 0.96999 * 119.99604 * 0.02562 * 1 2 3 29 29 H 1.09005 * 110.31614 * 63.07984 * 10 9 7 30 30 H 1.09002 * 110.39993 * 300.93341 * 10 9 7 31 31 H 1.09002 * 112.36496 * 64.26918 * 13 11 10 32 32 H 1.08991 * 112.37118 * 191.71663 * 13 11 10 33 33 H 1.08995 * 110.41324 * 170.14695 * 16 14 9 34 34 H 1.08998 * 110.20424 * 47.96571 * 16 14 9 35 35 H 1.08001 * 119.53942 * 179.74309 * 23 21 20 36 36 H 1.08001 * 119.54373 * 179.74685 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1423 -2.5668 -0.0005 11 6 -0.3639 -4.1102 0.0521 12 1 -1.3415 -4.4454 0.3985 13 6 0.8833 -4.5250 0.9124 14 6 1.9102 -3.7617 0.0016 15 1 2.9641 -3.8351 0.2698 16 6 1.5107 -4.3520 -1.3861 17 7 0.0528 -4.5838 -1.3012 18 6 -0.7388 -5.1198 -2.2511 19 8 -1.9283 -5.2585 -2.0438 20 6 -0.1597 -5.5396 -3.5468 21 6 -0.0836 -4.6484 -4.6236 22 17 -0.6697 -3.0221 -4.4647 23 6 0.4601 -5.0853 -5.8177 24 7 0.9116 -6.3169 -5.9456 25 6 0.8594 -7.1879 -4.9581 26 6 0.3271 -6.8390 -3.7304 27 17 0.2629 -7.9951 -2.4369 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5732 -2.1535 -0.9125 30 1 -0.5836 -2.0910 0.8753 31 1 0.8436 -4.1187 1.9231 32 1 1.0484 -5.6024 0.9111 33 1 2.0336 -5.2916 -1.5643 34 1 1.7348 -3.6372 -2.1779 35 1 0.5195 -4.4066 -6.6557 36 1 1.2379 -8.1880 -5.1096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032603590.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:20 Heat of formation + Delta-G solvation = 57.693657 kcal Electronic energy + Delta-G solvation = -25639.236989 eV Core-core repulsion = 21791.436555 eV Total energy + Delta-G solvation = -3847.800434 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.044 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90475 -39.85977 -37.89604 -37.04177 -36.69488 -33.76802 -32.87700 -31.39846 -31.30273 -29.12895 -28.62724 -25.51628 -25.11413 -23.92029 -23.37214 -21.09577 -19.99303 -18.99795 -17.96167 -17.47268 -16.97763 -16.55492 -16.23556 -15.49807 -14.85880 -14.82527 -14.74880 -14.40628 -13.95769 -13.43168 -13.29549 -12.65153 -12.58953 -12.30754 -12.06204 -11.97744 -11.77611 -11.72769 -11.38893 -11.14499 -11.09973 -10.92685 -10.84754 -10.68955 -10.39113 -10.32678 -10.12192 -9.89481 -9.69244 -9.61632 -9.18962 -8.75665 -8.17074 -6.98140 -5.80935 -3.15539 0.39497 0.43737 1.50414 1.91897 2.61143 2.98357 3.17785 3.34400 3.39459 3.41911 3.98590 4.22115 4.31983 4.37940 4.50880 4.75472 4.94597 5.09963 5.17566 5.27148 5.38370 5.50255 5.55794 5.69160 5.82992 5.85175 6.06487 6.17879 6.32119 6.37128 6.51790 6.57850 7.29359 7.36517 7.41845 7.67213 7.83559 8.05077 8.24380 9.05756 9.66783 10.34946 11.31136 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.004568 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.373512 B = 6128.304828 C = 7038.319231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.595 5.595 10 C 0.175 3.825 11 C 0.099 3.901 12 H 0.117 0.883 13 C -0.149 4.149 14 C 0.144 3.856 15 H 0.108 0.892 16 C 0.080 3.920 17 N -0.586 5.586 18 C 0.576 3.424 19 O -0.527 6.527 20 C -0.049 4.049 21 C -0.055 4.055 22 Cl -0.009 7.009 23 C 0.117 3.883 24 N -0.448 5.448 25 C 0.115 3.885 26 C -0.056 4.056 27 Cl -0.029 7.029 28 H 0.254 0.746 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.178 0.822 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 -14.214 -7.593 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.319 5.319 10 C 0.050 3.950 11 C -0.002 4.002 12 H 0.134 0.866 13 C -0.189 4.189 14 C 0.035 3.965 15 H 0.126 0.874 16 C -0.046 4.046 17 N -0.318 5.318 18 C 0.361 3.639 19 O -0.404 6.404 20 C -0.062 4.062 21 C -0.085 4.085 22 Cl 0.020 6.980 23 C -0.040 4.040 24 N -0.156 5.156 25 C -0.043 4.043 26 C -0.086 4.086 27 Cl 0.000 7.000 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.195 0.805 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.159 -14.207 -8.187 16.539 hybrid contribution 0.010 1.244 0.692 1.424 sum 2.169 -12.963 -7.494 15.130 Atomic orbital electron populations 1.69906 1.04921 1.25330 1.56284 1.24794 0.95654 0.97652 1.01917 0.86145 0.78622 0.83526 0.77575 1.21627 1.21666 1.20613 1.19020 0.90372 0.81986 1.44586 0.90168 1.45218 1.01262 0.99216 1.86174 1.21938 0.84783 0.86755 1.01571 1.24474 0.98045 0.97963 0.79754 0.86561 1.24149 0.96403 0.99050 0.99282 1.23140 0.96671 0.86333 0.90375 0.87401 1.23407 0.79370 0.99013 1.02772 1.49085 1.09510 1.58149 1.15080 1.17211 0.85935 0.78562 0.82197 1.90812 1.14126 1.56197 1.79297 1.20385 0.97330 0.92434 0.96055 1.22256 1.01464 0.89628 0.95196 1.98489 1.86042 1.15814 1.97674 1.22922 0.92937 0.92855 0.95310 1.67823 1.15006 1.02195 1.30617 1.22862 0.95155 1.00052 0.86204 1.22109 1.02798 0.90920 0.92778 1.98419 1.96761 1.57008 1.47805 0.93571 0.93210 0.92385 0.89464 0.91506 0.92860 0.90985 0.80486 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.07 10.56 55.49 0.59 -25.48 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.23 -5.97 10.37 -15.06 -0.16 -6.13 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.59 -13.73 3.03 -156.36 -0.47 -14.21 16 10 C 0.17 4.04 4.77 -1.68 -0.01 4.03 16 11 C 0.10 1.86 5.24 -62.54 -0.33 1.53 16 12 H 0.12 2.11 8.05 -51.93 -0.42 1.69 16 13 C -0.15 -2.41 6.80 -22.31 -0.15 -2.56 16 14 C 0.14 2.56 5.52 -62.57 -0.35 2.22 16 15 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 16 C 0.08 1.34 6.00 -1.68 -0.01 1.33 16 17 N -0.59 -10.57 2.95 -157.82 -0.47 -11.04 16 18 C 0.58 10.55 5.71 -12.26 -0.07 10.48 16 19 O -0.53 -11.19 17.45 5.34 0.09 -11.10 16 20 C -0.05 -0.76 4.95 -104.59 -0.52 -1.28 16 21 C -0.06 -0.80 6.38 -38.91 -0.25 -1.04 16 22 Cl -0.01 -0.15 28.17 -51.86 -1.46 -1.61 16 23 C 0.12 1.37 10.98 -17.55 -0.19 1.18 16 24 N -0.45 -5.14 10.33 -13.24 -0.14 -5.28 16 25 C 0.12 1.22 10.98 -17.55 -0.19 1.03 16 26 C -0.06 -0.72 6.38 -38.91 -0.25 -0.97 16 27 Cl -0.03 -0.35 28.17 -51.86 -1.46 -1.81 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 1.33 7.68 -51.93 -0.40 0.93 16 30 H 0.06 1.48 7.46 -51.93 -0.39 1.10 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.18 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -30.75 337.25 -9.53 -40.28 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.71 Total: -0.77 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -2.56 Total: 9.63 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.49 Total: -56.00 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -2.92 Total: -3.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.75 -9.53 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032603590.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.975 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds