Wall clock time and date at job start Sat Apr 11 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34778 * 120.00036 * 2 1 4 4 O 1.21698 * 119.99604 * 179.22889 * 3 2 1 5 5 C 1.46666 * 119.99859 * 359.22335 * 3 2 1 6 6 C 1.37890 * 126.22665 * 190.55717 * 5 3 2 7 7 C 1.39873 * 107.09502 * 179.84993 * 6 5 3 8 8 Br 1.89094 * 126.07451 * 180.16224 * 7 6 5 9 9 C 1.35508 * 107.85159 * 0.40989 * 7 6 5 10 10 N 1.35598 * 108.85581 * 359.74793 * 9 7 6 11 11 H 0.97002 * 125.67519 * 180.02562 * 10 9 7 12 12 C 1.46500 * 119.99812 * 179.97438 * 2 1 3 13 13 H 1.09004 * 110.77906 * 176.76275 * 12 2 1 14 14 C 1.55163 * 110.72270 * 299.99920 * 12 2 1 15 15 C 1.54910 * 101.61631 * 153.84646 * 14 12 2 16 16 N 1.47470 * 104.81182 * 323.04789 * 15 14 12 17 17 C 1.36939 * 125.63302 * 204.04999 * 16 15 14 18 18 H 1.07996 * 120.00467 * 171.78346 * 17 16 15 19 19 C 1.38820 * 119.99354 * 351.78632 * 17 16 15 20 20 N 1.31620 * 120.00065 * 4.09697 * 19 17 16 21 21 Si 1.86806 * 119.99608 * 184.09785 * 19 17 16 22 22 H 1.48500 * 109.46731 * 94.99621 * 21 19 17 23 23 H 1.48502 * 109.46696 * 214.99364 * 21 19 17 24 24 H 1.48500 * 109.47077 * 334.99643 * 21 19 17 25 25 C 1.47028 * 108.72512 * 24.06537 * 16 15 14 26 26 H 1.09006 * 109.47244 * 276.27310 * 1 2 3 27 27 H 1.09001 * 109.47174 * 36.27485 * 1 2 3 28 28 H 1.09000 * 109.46999 * 156.27585 * 1 2 3 29 29 H 1.08009 * 126.44687 * 359.97438 * 6 5 3 30 30 H 1.08002 * 125.57094 * 179.72065 * 9 7 6 31 31 H 1.08994 * 111.00618 * 271.94348 * 14 12 2 32 32 H 1.09001 * 110.99824 * 35.75832 * 14 12 2 33 33 H 1.09005 * 110.36764 * 81.84670 * 15 14 12 34 34 H 1.08992 * 110.36826 * 204.17745 * 15 14 12 35 35 H 0.96994 * 119.99455 * 180.02562 * 20 19 17 36 36 H 1.08996 * 109.88243 * 239.56087 * 25 16 15 37 37 H 1.09004 * 109.88107 * 118.39411 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1672 0.0142 5 6 1.4056 2.4373 -0.0172 6 6 1.9475 3.6884 -0.2232 7 6 0.8951 4.6077 -0.1612 8 35 1.0388 6.4809 -0.3757 9 6 -0.2449 3.9179 0.0854 10 7 0.0522 2.5979 0.1751 11 1 -0.5834 1.8853 0.3459 12 6 2.1974 -1.2688 0.0006 13 1 3.2720 -1.0950 -0.0571 14 6 1.8435 -2.1065 1.2578 15 6 2.1163 -3.5476 0.7593 16 7 1.6778 -3.5488 -0.6487 17 6 1.2890 -4.6511 -1.3622 18 1 0.8590 -4.5336 -2.3459 19 6 1.4476 -5.9196 -0.8209 20 7 1.8961 -6.0590 0.4086 21 14 1.0243 -7.4284 -1.8377 22 1 2.2524 -7.9421 -2.4958 23 1 0.4604 -8.4793 -0.9528 24 1 0.0238 -7.0633 -2.8725 25 6 1.7273 -2.1711 -1.1597 26 1 -0.3634 0.1123 1.0216 27 1 -0.3633 0.8285 -0.6080 28 1 -0.3633 -0.9408 -0.4135 29 1 2.9884 3.9155 -0.4010 30 1 -1.2292 4.3491 0.1934 31 1 2.4957 -1.8520 2.0931 32 1 0.7957 -1.9790 1.5298 33 1 3.1800 -3.7768 0.8251 34 1 1.5361 -4.2656 1.3387 35 1 2.0072 -6.9454 0.7866 36 1 0.7357 -1.8627 -1.4909 37 1 2.4332 -2.1081 -1.9879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033237262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:24 Heat of formation + Delta-G solvation = 69.477752 kcal Electronic energy + Delta-G solvation = -21569.926250 eV Core-core repulsion = 18203.333057 eV Total energy + Delta-G solvation = -3366.593193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.81576 -39.48085 -37.36795 -35.12523 -32.72973 -32.03583 -30.40076 -29.63376 -28.86614 -27.53818 -26.96676 -24.64118 -22.79313 -20.94230 -20.37476 -20.31608 -19.56952 -17.86640 -17.05937 -16.67637 -15.70559 -15.65494 -14.75877 -14.41907 -14.28330 -14.14703 -13.86304 -13.33734 -13.25717 -12.99530 -12.86049 -12.49442 -12.23928 -11.92166 -11.62384 -11.32106 -11.10148 -10.99729 -10.87132 -10.58836 -10.43840 -10.15909 -9.95022 -9.90958 -9.71190 -9.13441 -8.70735 -8.66634 -8.43600 -6.91012 -5.77887 -3.16878 1.21423 1.53167 2.13124 2.71863 3.03171 3.25271 3.35188 3.40652 3.42317 4.36155 4.42973 4.61940 4.70172 4.90639 5.03145 5.26048 5.34887 5.39725 5.42842 5.49305 5.60224 5.62469 5.77115 6.09088 6.15726 6.20559 6.36670 6.40172 6.46603 6.61125 6.82813 6.93534 7.35690 7.44667 7.52033 7.73723 8.09621 8.22303 9.12021 9.72646 10.37772 11.30028 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.043176 B = 0.002167 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.348840 B =12917.653658 C =13092.148740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.597 5.597 3 C 0.586 3.414 4 O -0.526 6.526 5 C -0.032 4.032 6 C -0.083 4.083 7 C -0.181 4.181 8 Br -0.032 7.032 9 C 0.053 3.947 10 N -0.535 5.535 11 H 0.429 0.571 12 C 0.127 3.873 13 H 0.108 0.892 14 C -0.153 4.153 15 C 0.165 3.835 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.129 3.871 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.157 0.843 30 H 0.180 0.820 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.027 0.973 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 24.099 1.306 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.329 5.329 3 C 0.374 3.626 4 O -0.402 6.402 5 C -0.146 4.146 6 C -0.110 4.110 7 C -0.267 4.267 8 Br 0.052 6.948 9 C -0.087 4.087 10 N -0.140 5.140 11 H 0.276 0.724 12 C 0.024 3.976 13 H 0.126 0.874 14 C -0.193 4.193 15 C 0.040 3.960 16 N -0.329 5.329 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.002 3.998 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.174 0.826 30 H 0.197 0.803 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.505 24.328 1.291 25.216 hybrid contribution -0.660 -1.447 -0.410 1.642 sum -7.165 22.881 0.881 23.993 Atomic orbital electron populations 1.22200 0.80984 1.04710 1.01217 1.47746 1.06389 1.06202 1.72567 1.17024 0.86795 0.81763 0.77008 1.90851 1.12382 1.86433 1.50515 1.20499 0.82863 0.95468 1.15750 1.21175 0.99250 0.88812 1.01811 1.21004 0.95954 0.91096 1.18613 1.96610 1.98674 1.02386 1.97116 1.21948 0.99369 0.82952 1.04442 1.43347 1.08404 1.08368 1.53902 0.72357 1.22322 0.97258 0.80743 0.97279 0.87406 1.23404 1.00686 0.99136 0.96038 1.21692 0.98357 0.90575 0.85420 1.44437 1.78183 1.01193 1.09072 1.19040 1.34041 0.83571 0.99055 0.90474 1.24845 1.01032 0.97499 0.96905 1.69877 1.51627 1.21684 1.13485 0.86075 0.77853 0.82633 0.79037 1.21504 1.21674 1.20608 1.21539 0.97812 0.86425 0.94054 0.92147 0.91359 0.88128 0.82582 0.80291 0.91850 0.91936 0.96043 0.88702 0.93579 0.95497 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 7.64 59.85 0.46 1.00 16 2 N -0.60 -8.67 2.89 -173.37 -0.50 -9.17 16 3 C 0.59 9.01 7.64 -12.86 -0.10 8.91 16 4 O -0.53 -9.93 16.28 5.19 0.08 -9.84 16 5 C -0.03 -0.40 6.65 -81.98 -0.55 -0.94 16 6 C -0.08 -1.01 10.65 -39.10 -0.42 -1.43 16 7 C -0.18 -1.84 6.53 -39.94 -0.26 -2.10 16 8 Br -0.03 -0.29 34.08 -68.01 -2.32 -2.61 16 9 C 0.05 0.42 11.86 -16.86 -0.20 0.22 16 10 N -0.54 -4.64 5.04 -9.36 -0.05 -4.69 16 11 H 0.43 2.71 4.95 -40.82 -0.20 2.51 16 12 C 0.13 2.26 3.35 -66.09 -0.22 2.04 16 13 H 0.11 2.10 7.01 -51.93 -0.36 1.73 16 14 C -0.15 -2.79 6.65 -24.58 -0.16 -2.96 16 15 C 0.16 3.87 5.65 -2.50 -0.01 3.85 16 16 N -0.60 -14.89 3.40 -170.03 -0.58 -15.46 16 17 C -0.23 -6.20 10.26 -15.06 -0.15 -6.35 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 20 N -0.92 -26.21 10.26 55.49 0.57 -25.64 16 21 Si 0.91 21.56 29.56 -169.99 -5.02 16.53 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.13 2.61 6.76 -3.06 -0.02 2.59 16 26 H 0.06 0.50 7.74 -51.93 -0.40 0.10 16 27 H 0.07 0.55 5.16 -51.93 -0.27 0.28 16 28 H 0.10 1.19 6.18 -51.93 -0.32 0.87 16 29 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 30 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.06 7.34 -51.93 -0.38 0.68 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 2.48 6.32 -51.93 -0.33 2.15 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.03 0.52 6.02 -51.93 -0.31 0.20 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -31.83 319.37 -8.97 -40.81 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.24 Total: 0.70 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.73 Total: 4.56 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.56 Total: -54.97 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.32 Total: -2.61 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.83 -8.97 -40.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033237262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.283 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds