Wall clock time and date at job start Sat Apr 11 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34770 * 120.00198 * 2 1 4 4 O 1.21699 * 120.00158 * 186.47573 * 3 2 1 5 5 C 1.46678 * 120.00046 * 6.46592 * 3 2 1 6 6 C 1.37882 * 126.22757 * 187.82336 * 5 3 2 7 7 C 1.39880 * 107.09216 * 179.97438 * 6 5 3 8 8 Br 1.89095 * 126.07230 * 180.02562 * 7 6 5 9 9 C 1.35507 * 107.85318 * 359.97438 * 7 6 5 10 10 N 1.35601 * 108.85386 * 359.75767 * 9 7 6 11 11 H 0.97005 * 125.67508 * 180.24908 * 10 9 7 12 12 C 1.46500 * 119.99832 * 179.97438 * 2 1 3 13 13 H 1.09001 * 110.88544 * 183.88245 * 12 2 1 14 14 C 1.55157 * 111.00233 * 60.00968 * 12 2 1 15 15 C 1.54326 * 102.94323 * 206.38263 * 14 12 2 16 16 N 1.47022 * 107.26867 * 22.18948 * 15 14 12 17 17 C 1.36937 * 125.64911 * 181.02354 * 16 15 14 18 18 H 1.07995 * 120.00173 * 175.52102 * 17 16 15 19 19 C 1.38816 * 119.99876 * 355.51639 * 17 16 15 20 20 N 1.31623 * 120.00169 * 213.80094 * 19 17 16 21 21 Si 1.86802 * 119.99730 * 33.52287 * 19 17 16 22 22 H 1.48496 * 109.47141 * 275.61325 * 21 19 17 23 23 H 1.48499 * 109.47304 * 35.61625 * 21 19 17 24 24 H 1.48501 * 109.47068 * 155.61704 * 21 19 17 25 25 C 1.47424 * 108.70461 * 1.29160 * 16 15 14 26 26 H 1.08993 * 109.47813 * 275.60134 * 1 2 3 27 27 H 1.08997 * 109.46873 * 35.60565 * 1 2 3 28 28 H 1.09006 * 109.47013 * 155.59626 * 1 2 3 29 29 H 1.07995 * 126.45214 * 0.02562 * 6 5 3 30 30 H 1.07997 * 125.56858 * 179.97438 * 9 7 6 31 31 H 1.08999 * 110.72488 * 88.01810 * 14 12 2 32 32 H 1.09002 * 110.87057 * 324.81350 * 14 12 2 33 33 H 1.09003 * 109.88352 * 262.77159 * 15 14 12 34 34 H 1.09006 * 110.01315 * 141.67807 * 15 14 12 35 35 H 0.96998 * 119.99937 * 354.71997 * 20 19 17 36 36 H 1.08998 * 110.36989 * 94.48374 * 25 16 15 37 37 H 1.09000 * 110.36345 * 216.80371 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3501 1.1705 -0.1189 5 6 1.4126 2.4334 0.1430 6 6 1.9456 3.6981 0.0100 7 6 0.9049 4.6075 0.2259 8 35 1.0442 6.4925 0.1703 9 6 -0.2209 3.8978 0.4809 10 7 0.0734 2.5752 0.4277 11 1 -0.5548 1.8497 0.5694 12 6 2.1975 -1.2687 0.0006 13 1 3.2717 -1.0973 0.0694 14 6 1.8485 -2.1129 -1.2536 15 6 2.1074 -3.5587 -0.7801 16 7 2.0279 -3.5581 0.6879 17 6 2.2184 -4.6456 1.4980 18 1 2.2098 -4.5274 2.5715 19 6 2.4225 -5.8999 0.9394 20 7 1.9656 -6.9737 1.5482 21 14 3.3388 -6.0631 -0.6802 22 1 2.3933 -5.8579 -1.8067 23 1 4.4151 -5.0421 -0.7451 24 1 3.9364 -7.4191 -0.7764 25 6 1.7028 -2.1941 1.1432 26 1 -0.3634 0.1003 1.0226 27 1 -0.3633 0.8355 -0.5983 28 1 -0.3633 -0.9359 -0.4246 29 1 2.9728 3.9407 -0.2187 30 1 -1.1942 4.3171 0.6887 31 1 2.5040 -1.8565 -2.0858 32 1 0.8032 -1.9799 -1.5327 33 1 3.0991 -3.8808 -1.0976 34 1 1.3512 -4.2272 -1.1920 35 1 1.5542 -6.8970 2.4232 36 1 0.6271 -2.0869 1.2825 37 1 2.2306 -1.9675 2.0696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033237263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:27 Heat of formation + Delta-G solvation = 71.256634 kcal Electronic energy + Delta-G solvation = -21626.845394 eV Core-core repulsion = 18260.329339 eV Total energy + Delta-G solvation = -3366.516055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.88032 -39.62811 -37.65023 -35.33520 -32.79644 -32.22980 -30.46810 -29.93863 -29.04061 -28.00117 -27.25469 -24.24605 -22.79268 -21.08459 -20.70218 -20.44629 -19.80567 -18.00932 -17.51580 -16.83579 -15.96966 -15.79108 -15.22853 -14.49252 -14.44900 -14.12314 -13.66174 -13.44250 -13.38072 -13.20297 -13.06732 -12.94036 -12.68769 -12.32384 -12.07540 -11.41405 -11.33503 -11.10985 -11.07998 -10.75016 -10.50309 -10.16335 -10.10328 -9.72312 -9.30943 -9.20113 -8.79473 -8.55535 -8.36838 -7.16195 -6.45342 -3.18432 1.12139 1.47346 2.05909 2.60935 2.92439 3.14163 3.38842 3.50113 3.66146 4.27198 4.55218 4.55637 4.58447 4.82771 4.84094 4.93313 5.09684 5.17893 5.22112 5.29348 5.37488 5.47080 5.55357 5.74129 5.80321 6.08292 6.10738 6.22799 6.30263 6.37246 6.47179 6.62306 6.70210 6.84683 7.22503 7.63225 7.97927 8.27489 8.97338 9.54624 10.20208 11.05739 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.044518 B = 0.002270 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.806818 B =12330.189088 C =12547.969257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.601 5.601 3 C 0.588 3.412 4 O -0.522 6.522 5 C -0.035 4.035 6 C -0.081 4.081 7 C -0.181 4.181 8 Br -0.030 7.030 9 C 0.055 3.945 10 N -0.535 5.535 11 H 0.427 0.573 12 C 0.122 3.878 13 H 0.113 0.887 14 C -0.137 4.137 15 C 0.110 3.890 16 N -0.605 5.605 17 C -0.344 4.344 18 H 0.079 0.921 19 C -0.014 4.014 20 N -0.905 5.905 21 Si 1.060 2.940 22 H -0.292 1.292 23 H -0.292 1.292 24 H -0.298 1.298 25 C 0.136 3.864 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.181 0.819 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.028 0.972 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 27.130 -4.443 28.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.333 5.333 3 C 0.376 3.624 4 O -0.398 6.398 5 C -0.148 4.148 6 C -0.108 4.108 7 C -0.267 4.267 8 Br 0.054 6.946 9 C -0.085 4.085 10 N -0.139 5.139 11 H 0.274 0.726 12 C 0.019 3.981 13 H 0.131 0.869 14 C -0.176 4.176 15 C -0.015 4.015 16 N -0.333 5.333 17 C -0.471 4.471 18 H 0.097 0.903 19 C -0.216 4.216 20 N -0.545 5.545 21 Si 0.893 3.107 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.226 1.226 25 C 0.008 3.992 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.175 0.825 30 H 0.198 0.802 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.110 26.410 -5.566 27.911 hybrid contribution -0.912 0.460 1.286 1.642 sum -8.022 26.871 -4.280 28.367 Atomic orbital electron populations 1.22115 0.80830 1.04349 1.01377 1.47661 1.06383 1.06087 1.73159 1.17023 0.86683 0.81699 0.76971 1.90863 1.12849 1.86257 1.49811 1.20464 0.83651 0.95235 1.15462 1.21189 0.99347 0.88777 1.01532 1.21017 0.96512 0.90876 1.18305 1.96620 1.98683 1.01060 1.98282 1.21951 0.99540 0.82613 1.04351 1.43179 1.09335 1.07986 1.53366 0.72597 1.22651 0.97835 0.80780 0.96880 0.86904 1.22915 1.01507 0.95833 0.97313 1.21710 0.99389 0.94116 0.86266 1.44706 1.83446 1.04866 1.00328 1.19905 1.51572 0.85460 0.90127 0.90316 1.25644 0.99578 0.90873 1.05496 1.70940 1.36718 1.31188 1.15639 0.83924 0.77031 0.74148 0.75629 1.21920 1.21961 1.22563 1.21789 0.97491 0.85071 0.94829 0.92050 0.91241 0.88664 0.82543 0.80227 0.90913 0.91145 0.94651 0.93709 0.92514 0.95464 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 7.38 59.85 0.44 0.95 16 2 N -0.60 -8.00 2.91 -172.88 -0.50 -8.50 16 3 C 0.59 8.51 7.63 -12.86 -0.10 8.41 16 4 O -0.52 -9.48 16.30 5.19 0.08 -9.40 16 5 C -0.03 -0.40 6.63 -81.98 -0.54 -0.94 16 6 C -0.08 -0.93 10.64 -39.10 -0.42 -1.35 16 7 C -0.18 -1.74 6.53 -39.94 -0.26 -2.00 16 8 Br -0.03 -0.26 34.08 -68.01 -2.32 -2.58 16 9 C 0.06 0.41 11.86 -16.86 -0.20 0.21 16 10 N -0.54 -4.23 5.07 -9.36 -0.05 -4.28 16 11 H 0.43 2.35 4.93 -40.82 -0.20 2.15 16 12 C 0.12 2.04 3.44 -65.66 -0.23 1.81 16 13 H 0.11 2.12 7.05 -51.93 -0.37 1.76 16 14 C -0.14 -2.24 6.49 -24.89 -0.16 -2.40 16 15 C 0.11 2.36 4.86 -3.06 -0.01 2.34 16 16 N -0.61 -14.60 3.38 -169.93 -0.57 -15.18 16 17 C -0.34 -9.74 10.40 -15.06 -0.16 -9.89 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 19 C -0.01 -0.41 5.43 -17.43 -0.09 -0.50 16 20 N -0.91 -27.86 13.70 55.49 0.76 -27.10 16 21 Si 1.06 26.41 24.68 -169.99 -4.20 22.22 16 22 H -0.29 -6.78 6.39 56.52 0.36 -6.42 16 23 H -0.29 -7.01 6.54 56.52 0.37 -6.64 16 24 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 25 C 0.14 2.63 6.79 -2.41 -0.02 2.62 16 26 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 27 H 0.07 0.46 5.67 -51.93 -0.29 0.16 16 28 H 0.09 0.88 6.37 -51.93 -0.33 0.55 16 29 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.99 6.48 -51.93 -0.34 0.65 16 33 H 0.04 0.80 4.41 -51.93 -0.23 0.57 16 34 H 0.05 1.00 6.95 -51.93 -0.36 0.64 16 35 H 0.26 8.03 8.73 -40.82 -0.36 7.67 16 36 H 0.03 0.50 6.96 -51.93 -0.36 0.14 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -33.85 313.69 -8.02 -41.87 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -4.21 Total: -1.04 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.75 Total: -0.74 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.36 Total: -55.05 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -4.20 Total: 22.22 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.32 Total: -2.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.85 -8.02 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033237263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.124 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds