Wall clock time and date at job start Sat Apr 11 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 110.91887 * 2 1 4 4 C 1.34779 * 120.00103 * 62.44201 * 3 2 1 5 5 O 1.21699 * 120.00023 * 0.02562 * 4 3 2 6 6 C 1.46671 * 119.99759 * 180.02562 * 4 3 2 7 7 C 1.37888 * 126.21931 * 180.02562 * 6 4 3 8 8 C 1.39879 * 107.08903 * 180.02562 * 7 6 4 9 9 Br 1.89098 * 126.07523 * 180.02562 * 8 7 6 10 10 C 1.35512 * 107.85354 * 359.97438 * 8 7 6 11 11 N 1.35601 * 108.85406 * 359.73692 * 10 8 7 12 12 H 0.96997 * 125.67467 * 180.28782 * 11 10 8 13 13 C 1.55441 * 111.11737 * 235.99848 * 2 1 3 14 14 C 1.54323 * 102.97188 * 206.46567 * 13 2 1 15 15 N 1.47022 * 107.26753 * 22.19263 * 14 13 2 16 16 C 1.36940 * 125.64951 * 181.03524 * 15 14 13 17 17 H 1.07993 * 120.00626 * 173.96059 * 16 15 14 18 18 C 1.38813 * 119.99685 * 353.96137 * 16 15 14 19 19 N 1.31622 * 120.00459 * 6.83562 * 18 16 15 20 20 Si 1.86803 * 120.00134 * 186.84485 * 18 16 15 21 21 H 1.48493 * 109.47511 * 94.97953 * 20 18 16 22 22 H 1.48499 * 109.47218 * 214.98678 * 20 18 16 23 23 H 1.48501 * 109.46706 * 334.97961 * 20 18 16 24 24 C 1.47424 * 108.70453 * 1.06423 * 15 14 13 25 25 H 1.09003 * 109.47087 * 297.55497 * 1 2 3 26 26 H 1.09003 * 109.46870 * 57.55268 * 1 2 3 27 27 H 1.08998 * 109.47123 * 177.55827 * 1 2 3 28 28 H 0.96997 * 120.00107 * 242.45333 * 3 2 1 29 29 H 1.07993 * 126.45818 * 359.97438 * 7 6 4 30 30 H 1.07996 * 125.57224 * 179.97438 * 10 8 7 31 31 H 1.09002 * 110.70736 * 88.09463 * 13 2 1 32 32 H 1.08995 * 110.86058 * 324.91152 * 13 2 1 33 33 H 1.09004 * 109.88274 * 262.77884 * 14 13 2 34 34 H 1.08993 * 110.01225 * 141.68434 * 14 13 2 35 35 H 0.96996 * 120.00616 * 180.02562 * 19 18 16 36 36 H 1.08998 * 110.36838 * 94.71045 * 24 15 14 37 37 H 1.09001 * 110.36387 * 216.92232 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0531 1.3685 0.0000 4 6 1.7893 2.1908 1.0348 5 8 1.1170 1.7964 1.9694 6 6 2.3126 3.5610 1.0344 7 6 2.1231 4.5057 2.0208 8 6 2.7919 5.6648 1.6137 9 35 2.8806 7.2935 2.5705 10 6 3.3661 5.4130 0.4123 11 7 3.0871 4.1357 0.0525 12 1 3.3821 3.7003 -0.7625 13 6 2.0901 -0.8109 -1.2021 14 6 3.4707 -1.2760 -0.6931 15 7 3.4279 -1.2430 0.7761 16 6 4.4636 -1.5650 1.6121 17 1 4.3645 -1.4158 2.6771 18 6 5.6411 -2.0831 1.0906 19 7 5.8148 -2.1398 -0.2128 20 14 6.9792 -2.7003 2.2388 21 1 6.8332 -4.1661 2.4265 22 1 8.3106 -2.4067 1.6503 23 1 6.8575 -2.0185 3.5524 24 6 2.0852 -0.8066 1.2004 25 1 -0.3633 0.4754 0.9111 26 1 -0.3633 0.5514 -0.8673 27 1 -0.3633 -1.0267 -0.0438 28 1 2.5892 1.6828 -0.7448 29 1 1.5632 4.3756 2.9350 30 1 3.9533 6.1136 -0.1626 31 1 2.1973 -0.1740 -2.0802 32 1 1.4524 -1.6666 -1.4238 33 1 4.2462 -0.6017 -1.0566 34 1 3.6719 -2.2910 -1.0355 35 1 6.6374 -2.5022 -0.5773 36 1 1.4518 -1.6704 1.4026 37 1 2.1541 -0.1724 2.0842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046459447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:38 Heat of formation + Delta-G solvation = 39.967243 kcal Electronic energy + Delta-G solvation = -21982.042637 eV Core-core repulsion = 18614.169773 eV Total energy + Delta-G solvation = -3367.872865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.46339 -39.53092 -37.18753 -34.07063 -32.57036 -31.81236 -30.32065 -30.03654 -28.83797 -28.42114 -25.71271 -23.96002 -23.00162 -20.70016 -20.34298 -20.19179 -19.10958 -18.78825 -16.89703 -15.83643 -15.57508 -15.19480 -14.68272 -14.24695 -14.09660 -13.81121 -13.64978 -13.38507 -12.96127 -12.84399 -12.67625 -12.12687 -11.99874 -11.83228 -11.70494 -11.19216 -10.95580 -10.89817 -10.52299 -10.43754 -10.30902 -10.11142 -10.07291 -9.68991 -9.51246 -8.97505 -8.76343 -8.59591 -8.35115 -6.82610 -5.75153 -3.05827 1.39462 1.65078 2.29637 2.95725 3.33460 3.39512 3.45475 3.47067 3.53313 4.49238 4.74383 4.82797 5.01631 5.09668 5.32771 5.41248 5.52276 5.55881 5.66456 5.77341 5.93534 6.04571 6.09573 6.27578 6.30816 6.32471 6.44632 6.53576 6.60755 6.80327 7.03456 7.08258 7.45650 7.54327 7.73813 7.78381 8.22878 8.40756 9.20644 9.80829 10.46792 11.37423 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003238 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.065207 B = 8644.903668 C = 9867.363331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.700 5.700 4 C 0.591 3.409 5 O -0.523 6.523 6 C -0.030 4.030 7 C -0.085 4.085 8 C -0.181 4.181 9 Br -0.033 7.033 10 C 0.058 3.942 11 N -0.528 5.528 12 H 0.424 0.576 13 C -0.146 4.146 14 C 0.177 3.823 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.131 3.869 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.391 0.609 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.251 0.749 36 H 0.028 0.972 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 18.025 -3.088 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.070 3.930 3 N -0.349 5.349 4 C 0.377 3.623 5 O -0.399 6.399 6 C -0.144 4.144 7 C -0.112 4.112 8 C -0.267 4.267 9 Br 0.051 6.949 10 C -0.082 4.082 11 N -0.124 5.124 12 H 0.262 0.738 13 C -0.184 4.184 14 C 0.052 3.948 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.572 5.572 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.004 3.996 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.224 0.776 29 H 0.174 0.826 30 H 0.196 0.804 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.079 18.083 -2.203 19.928 hybrid contribution 1.371 -0.712 -0.502 1.624 sum -6.708 17.370 -2.705 18.816 Atomic orbital electron populations 1.21990 0.94091 1.02192 1.02466 1.21590 0.92652 0.80205 0.98547 1.45684 1.54145 1.13171 1.21927 1.16853 0.80167 0.82555 0.82717 1.90811 1.39277 1.75123 1.34676 1.20658 1.05243 0.95466 0.93045 1.21145 1.01001 0.90001 0.99079 1.20953 1.12205 0.94664 0.98899 1.96591 1.98388 1.25696 1.74247 1.21828 1.03007 0.86546 0.96832 1.42067 1.39969 1.11127 1.19233 0.73777 1.23277 1.00579 0.98910 0.95679 1.21159 0.89773 1.00026 0.83854 1.44437 1.07597 1.79171 1.01694 1.19084 0.91908 1.34577 0.89515 0.90516 1.24773 0.98140 1.01452 0.96011 1.69952 1.26353 1.51348 1.09529 0.86136 0.81182 0.78937 0.79819 1.21596 1.21851 1.20617 1.21899 0.87559 0.95000 0.95166 0.90920 0.93113 0.91638 0.77622 0.82632 0.80357 0.91943 0.90650 0.94225 0.93423 0.93887 0.95490 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.60 37.16 0.32 -1.86 16 2 C 0.16 2.66 0.83 -129.51 -0.11 2.55 16 3 N -0.70 -10.79 5.17 -46.77 -0.24 -11.03 16 4 C 0.59 9.77 7.18 -12.86 -0.09 9.67 16 5 O -0.52 -10.20 13.68 5.19 0.07 -10.13 16 6 C -0.03 -0.42 7.05 -81.98 -0.58 -1.00 16 7 C -0.09 -1.17 10.63 -39.10 -0.42 -1.59 16 8 C -0.18 -2.14 6.53 -39.94 -0.26 -2.40 16 9 Br -0.03 -0.35 34.08 -68.01 -2.32 -2.67 16 10 C 0.06 0.56 11.86 -16.86 -0.20 0.36 16 11 N -0.53 -5.45 5.99 -9.36 -0.06 -5.51 16 12 H 0.42 3.24 8.19 -40.82 -0.33 2.91 16 13 C -0.15 -2.46 6.00 -24.74 -0.15 -2.61 16 14 C 0.18 4.05 5.38 -3.06 -0.02 4.03 16 15 N -0.60 -15.20 3.40 -170.08 -0.58 -15.78 16 16 C -0.22 -6.26 10.26 -15.06 -0.15 -6.42 16 17 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 18 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.58 10.36 55.49 0.57 -26.01 16 20 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.13 2.82 6.10 -2.53 -0.02 2.80 16 25 H 0.07 1.17 6.53 -51.93 -0.34 0.83 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 28 H 0.39 5.05 7.62 -40.82 -0.31 4.74 16 29 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 32 H 0.07 1.19 8.03 -51.93 -0.42 0.78 16 33 H 0.04 0.98 7.55 -51.93 -0.39 0.59 16 34 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 37 H 0.06 1.33 6.31 -51.93 -0.33 1.01 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -32.66 325.67 -9.01 -41.67 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.57 Total: 4.05 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.77 Total: 3.22 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.30 Total: -58.32 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.32 Total: -2.67 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.66 -9.01 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046459447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.636 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds