Wall clock time and date at job start Sat Apr 11 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.77964 * 2 1 4 4 C 1.54327 * 110.71785 * 123.23203 * 2 1 3 5 5 N 1.47031 * 107.26816 * 140.55937 * 4 2 1 6 6 C 1.34778 * 125.64368 * 181.09401 * 5 4 2 7 7 O 1.21691 * 120.00599 * 358.12220 * 6 5 4 8 8 C 1.46672 * 119.99719 * 178.12282 * 6 5 4 9 9 C 1.37884 * 126.22866 * 188.05392 * 8 6 5 10 10 C 1.39878 * 107.09315 * 180.02562 * 9 8 6 11 11 Br 1.89100 * 126.07130 * 180.02562 * 10 9 8 12 12 C 1.35498 * 107.85443 * 359.97438 * 10 9 8 13 13 N 1.35603 * 108.85758 * 359.73576 * 12 10 9 14 14 H 0.97003 * 125.67803 * 180.28571 * 13 12 10 15 15 C 1.47415 * 108.70461 * 1.05885 * 5 4 2 16 16 C 1.54912 * 104.83351 * 335.87117 * 15 5 4 17 17 H 1.09005 * 111.00440 * 155.11853 * 16 15 5 18 18 N 1.46498 * 111.00404 * 278.93454 * 16 15 5 19 19 C 1.36931 * 120.00095 * 273.54065 * 18 16 15 20 20 H 1.08000 * 119.99916 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00096 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99644 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00172 * 180.28219 * 21 19 18 24 24 H 1.48504 * 109.47300 * 179.72755 * 23 21 19 25 25 H 1.48508 * 109.46755 * 299.72174 * 23 21 19 26 26 H 1.48500 * 109.47602 * 59.72161 * 23 21 19 27 27 H 1.09005 * 109.46690 * 183.24023 * 1 2 3 28 28 H 1.08998 * 109.47463 * 303.24154 * 1 2 3 29 29 H 1.09000 * 109.47019 * 63.24818 * 1 2 3 30 30 H 1.08995 * 109.88452 * 21.14337 * 4 2 1 31 31 H 1.09004 * 110.01293 * 260.04260 * 4 2 1 32 32 H 1.08000 * 126.44985 * 0.02562 * 9 8 6 33 33 H 1.07999 * 125.57123 * 179.97438 * 12 10 9 34 34 H 1.08997 * 110.37148 * 217.03481 * 15 5 4 35 35 H 1.09004 * 110.36733 * 94.70782 * 15 5 4 36 36 H 0.96998 * 119.99870 * 93.54868 * 18 16 15 37 37 H 0.97005 * 119.99490 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7911 1.2074 5 7 3.2445 -1.5506 0.7392 6 6 3.9915 -2.3844 1.4898 7 8 3.7378 -2.5323 2.6707 8 6 5.1102 -3.1137 0.8831 9 6 5.8557 -4.1071 1.4819 10 6 6.8129 -4.5212 0.5497 11 35 8.1174 -5.8643 0.8152 12 6 6.6387 -3.7898 -0.5775 13 7 5.6028 -2.9351 -0.3897 14 1 5.2667 -2.3014 -1.0427 15 6 3.4633 -1.2498 -0.6873 16 6 2.0790 -0.7956 -1.2137 17 1 2.1850 -0.1525 -2.0874 18 7 1.2272 -1.9490 -1.5143 19 6 1.2984 -2.5512 -2.7420 20 1 1.9827 -2.1761 -3.4886 21 6 0.4909 -3.6437 -3.0270 22 7 -0.3435 -4.1005 -2.1173 23 14 0.5936 -4.4701 -4.6991 24 1 -0.3594 -5.6080 -4.7482 25 1 0.2474 -3.4885 -5.7584 26 1 1.9741 -4.9706 -4.9200 27 1 -0.3633 -1.0261 0.0581 28 1 -0.3634 0.5633 0.8595 29 1 -0.3633 0.4626 -0.9177 30 1 1.3129 -1.4757 1.5777 31 1 2.3735 -0.1041 1.9997 32 1 5.7251 -4.4928 2.4822 33 1 7.2261 -3.8764 -1.4796 34 1 3.7961 -2.1427 -1.2166 35 1 4.1932 -0.4478 -0.7982 36 1 0.6128 -2.2860 -0.8436 37 1 -0.9075 -4.8642 -2.3163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054874520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:47 Heat of formation + Delta-G solvation = 39.535356 kcal Electronic energy + Delta-G solvation = -22045.324197 eV Core-core repulsion = 18677.432604 eV Total energy + Delta-G solvation = -3367.891593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.43789 -39.44532 -37.55186 -34.06081 -32.84406 -31.97876 -30.66144 -30.09106 -28.84945 -27.98764 -26.11535 -24.15366 -23.00412 -21.24341 -20.41271 -20.08317 -19.39856 -17.83052 -17.20592 -16.18592 -15.94404 -15.24581 -14.70302 -14.55802 -14.07310 -13.93269 -13.71812 -13.10382 -13.02245 -12.82354 -12.73208 -12.65326 -12.31305 -12.07975 -11.69374 -11.23698 -11.06966 -11.01934 -10.86366 -10.61277 -10.41559 -10.23244 -10.08347 -9.88750 -9.77610 -9.16698 -8.85523 -8.48685 -8.17430 -7.17502 -5.94299 -3.25737 1.51182 1.77619 2.41557 3.00767 3.31209 3.32807 3.36415 3.39189 3.53496 4.41768 4.59586 4.89669 4.92603 4.97434 5.18144 5.21033 5.32412 5.47510 5.55912 5.57424 5.69990 5.83776 5.88595 5.98044 6.01827 6.18751 6.22605 6.31283 6.38732 6.47987 6.56840 6.72077 6.80527 7.23716 7.49939 7.70201 8.22801 8.32636 9.34903 9.88712 10.23067 11.27218 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.003895 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.270067 B = 7186.232088 C = 8990.191495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 H 0.082 0.918 4 C 0.118 3.882 5 N -0.601 5.601 6 C 0.602 3.398 7 O -0.538 6.538 8 C -0.026 4.026 9 C -0.087 4.087 10 C -0.181 4.181 11 Br -0.035 7.035 12 C 0.056 3.944 13 N -0.527 5.527 14 H 0.427 0.573 15 C 0.050 3.950 16 C 0.175 3.825 17 H 0.074 0.926 18 N -0.707 5.707 19 C -0.257 4.257 20 H 0.071 0.929 21 C -0.003 4.003 22 N -0.924 5.924 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.284 1.284 26 H -0.286 1.286 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.389 0.611 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.613 4.417 3.662 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 H 0.100 0.900 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.391 3.609 7 O -0.416 6.416 8 C -0.140 4.140 9 C -0.114 4.114 10 C -0.267 4.267 11 Br 0.048 6.952 12 C -0.085 4.085 13 N -0.129 5.129 14 H 0.273 0.727 15 C -0.077 4.077 16 C 0.062 3.938 17 H 0.091 0.909 18 N -0.348 5.348 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.200 4.200 22 N -0.570 5.570 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.211 1.211 26 H -0.212 1.212 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.172 0.828 33 H 0.196 0.804 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.849 3.865 4.162 15.899 hybrid contribution -0.476 -0.230 -1.221 1.331 sum 14.373 3.634 2.941 15.114 Atomic orbital electron populations 1.21608 0.93212 1.03096 1.01100 1.22499 0.97326 0.98526 0.94846 0.90016 1.21998 0.87434 0.94390 0.96619 1.48192 1.29820 1.43902 1.11375 1.16577 0.80656 0.78288 0.85331 1.90817 1.70705 1.65213 1.14829 1.20382 1.01971 1.05301 0.86319 1.21090 0.94324 0.96237 0.99774 1.20910 1.03305 1.04148 0.98322 1.96566 1.51758 1.49582 1.97268 1.21893 0.93112 0.93892 0.99577 1.43006 1.25575 1.31286 1.13055 0.72655 1.23705 1.02787 0.99907 0.81264 1.21317 0.87963 0.90084 0.94469 0.90851 1.42388 1.44924 1.32295 1.15187 1.19120 1.19063 1.09661 0.90902 0.91128 1.24767 0.98655 0.98661 0.97955 1.69647 1.26696 1.27158 1.33531 0.86292 0.77324 0.79027 0.83608 1.21555 1.21088 1.21212 0.91190 0.93477 0.92007 0.91099 0.91898 0.82778 0.80407 0.90346 0.92230 0.77559 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.71 37.16 0.32 -1.62 16 2 C -0.11 -1.59 3.42 -88.78 -0.30 -1.89 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.84 6.46 -3.06 -0.02 1.82 16 5 N -0.60 -10.01 3.33 -172.06 -0.57 -10.58 16 6 C 0.60 11.04 7.81 -12.86 -0.10 10.94 16 7 O -0.54 -11.28 17.22 5.20 0.09 -11.19 16 8 C -0.03 -0.42 6.84 -81.98 -0.56 -0.98 16 9 C -0.09 -1.36 10.64 -39.10 -0.42 -1.77 16 10 C -0.18 -2.47 6.53 -39.95 -0.26 -2.74 16 11 Br -0.04 -0.42 34.08 -68.01 -2.32 -2.74 16 12 C 0.06 0.68 11.86 -16.86 -0.20 0.48 16 13 N -0.53 -7.04 5.39 -9.36 -0.05 -7.09 16 14 H 0.43 5.04 5.21 -40.82 -0.21 4.83 16 15 C 0.05 0.75 5.15 -2.53 -0.01 0.74 16 16 C 0.17 2.91 3.44 -65.78 -0.23 2.69 16 17 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 18 N -0.71 -15.63 4.74 -51.35 -0.24 -15.87 16 19 C -0.26 -6.40 9.98 -15.06 -0.15 -6.55 16 20 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 21 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 22 N -0.92 -26.53 13.06 55.49 0.72 -25.81 16 23 Si 0.91 21.14 29.55 -169.99 -5.02 16.11 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.07 1.23 6.35 -51.93 -0.33 0.90 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.24 7.76 -51.93 -0.40 0.84 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 33 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.08 1.26 5.53 -51.93 -0.29 0.97 16 35 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 36 H 0.39 9.49 6.08 -40.82 -0.25 9.24 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -30.46 327.05 -8.90 -39.36 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.41 Total: 11.93 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.02 Total: 0.95 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.14 Total: -59.35 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.32 Total: -2.74 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.46 -8.90 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054874520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.895 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds