Wall clock time and date at job start Sat Apr 11 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.78198 * 2 1 4 4 C 1.54328 * 110.71734 * 123.24277 * 2 1 3 5 5 N 1.47022 * 107.27127 * 140.55554 * 4 2 1 6 6 C 1.34771 * 125.64532 * 181.00969 * 5 4 2 7 7 O 1.21702 * 120.00053 * 175.00906 * 6 5 4 8 8 C 1.46673 * 120.00467 * 355.01315 * 6 5 4 9 9 C 1.37884 * 126.23036 * 185.58170 * 8 6 5 10 10 C 1.39875 * 107.09170 * 179.97438 * 9 8 6 11 11 Br 1.89101 * 126.07011 * 180.02562 * 10 9 8 12 12 C 1.35496 * 107.85733 * 359.97438 * 10 9 8 13 13 N 1.35607 * 108.85404 * 359.75514 * 12 10 9 14 14 H 0.96997 * 125.67234 * 180.27292 * 13 12 10 15 15 C 1.47424 * 108.70477 * 1.05476 * 5 4 2 16 16 C 1.54911 * 104.83167 * 335.87435 * 15 5 4 17 17 H 1.09002 * 111.00352 * 278.93771 * 16 15 5 18 18 N 1.46501 * 111.00362 * 155.08394 * 16 15 5 19 19 C 1.36935 * 120.00011 * 92.80947 * 18 16 15 20 20 H 1.08004 * 119.99832 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99864 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00277 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99661 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47302 * 59.99774 * 23 21 19 25 25 H 1.48504 * 109.46947 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47012 * 299.99282 * 23 21 19 27 27 H 1.08993 * 109.47265 * 183.23959 * 1 2 3 28 28 H 1.09000 * 109.46995 * 303.23975 * 1 2 3 29 29 H 1.09003 * 109.47000 * 63.23699 * 1 2 3 30 30 H 1.09004 * 109.87624 * 259.96763 * 4 2 1 31 31 H 1.08994 * 109.88430 * 21.13271 * 4 2 1 32 32 H 1.08004 * 126.44957 * 359.97438 * 9 8 6 33 33 H 1.07998 * 125.57694 * 179.97438 * 12 10 9 34 34 H 1.08995 * 110.36948 * 217.03587 * 15 5 4 35 35 H 1.09001 * 110.46197 * 94.75538 * 15 5 4 36 36 H 0.96994 * 119.99903 * 272.80176 * 18 16 15 37 37 H 0.96991 * 120.00007 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0760 -0.7913 1.2073 5 7 3.2445 -1.5509 0.7390 6 6 3.9923 -2.3835 1.4898 7 8 4.8843 -3.0317 0.9748 8 6 3.7311 -2.5088 2.9277 9 6 4.4788 -3.2332 3.8317 10 6 3.8757 -3.0755 5.0839 11 35 4.4659 -3.8426 6.7084 12 6 2.7942 -2.2746 4.9263 13 7 2.6989 -1.9188 3.6212 14 1 2.0156 -1.3458 3.2396 15 6 3.4633 -1.2499 -0.6875 16 6 2.0790 -0.7955 -1.2138 17 1 1.4451 -1.6536 -1.4374 18 7 2.2215 0.0695 -2.3875 19 6 2.1867 -0.4714 -3.6450 20 1 2.0545 -1.5358 -3.7715 21 6 2.3223 0.3482 -4.7571 22 7 2.4839 1.6453 -4.6030 23 14 2.2755 -0.3899 -6.4725 24 1 0.9718 -1.0687 -6.6839 25 1 2.4406 0.6885 -7.4800 26 1 3.3763 -1.3760 -6.6173 27 1 -0.3633 -1.0259 0.0581 28 1 -0.3633 0.5633 0.8595 29 1 -0.3633 0.4628 -0.9176 30 1 2.3741 -0.1024 1.9977 31 1 1.3129 -1.4758 1.5776 32 1 5.3636 -3.8131 3.6139 33 1 2.1205 -1.9668 5.7121 34 1 3.7959 -2.1427 -1.2169 35 1 4.1936 -0.4487 -0.8003 36 1 2.3405 1.0254 -2.2739 37 1 2.5783 2.2180 -5.3801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054874527.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:52 Heat of formation + Delta-G solvation = 32.745258 kcal Electronic energy + Delta-G solvation = -21390.580612 eV Core-core repulsion = 18022.394579 eV Total energy + Delta-G solvation = -3368.186033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.69746 -39.53787 -37.63088 -34.35603 -32.73838 -32.30772 -30.88910 -30.34164 -29.31840 -27.43253 -26.50440 -24.28678 -22.76807 -21.10310 -20.71970 -20.34907 -19.98316 -17.97107 -17.15461 -16.41591 -16.09259 -15.34236 -14.95271 -14.37727 -14.17705 -14.02321 -13.80090 -13.25628 -13.16889 -13.04554 -12.97873 -12.82545 -12.75701 -12.06719 -11.77401 -11.31816 -11.23698 -11.15400 -10.85463 -10.77407 -10.44910 -10.36393 -10.11908 -10.01572 -9.81684 -9.12964 -9.07971 -8.67716 -8.41538 -7.16560 -5.90846 -3.22151 1.23592 1.53469 2.14706 2.75791 3.08577 3.28679 3.37944 3.43035 3.43710 4.41955 4.45019 4.56299 4.63164 4.82768 4.89594 5.02756 5.18642 5.31466 5.38300 5.53636 5.63171 5.64596 5.72043 5.85146 6.00083 6.10908 6.15712 6.23322 6.28901 6.39103 6.44049 6.52199 6.75367 6.94100 7.54174 7.58859 8.14452 8.26323 9.38590 9.89815 10.24783 11.30853 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.002257 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.582491 B =12405.531657 C =12986.324352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 H 0.088 0.912 4 C 0.095 3.905 5 N -0.613 5.613 6 C 0.597 3.403 7 O -0.526 6.526 8 C -0.030 4.030 9 C -0.084 4.084 10 C -0.181 4.181 11 Br -0.031 7.031 12 C 0.055 3.945 13 N -0.533 5.533 14 H 0.424 0.576 15 C 0.080 3.920 16 C 0.178 3.822 17 H 0.070 0.930 18 N -0.707 5.707 19 C -0.251 4.251 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.387 0.613 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -6.366 24.760 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 H 0.107 0.893 4 C -0.029 4.029 5 N -0.346 5.346 6 C 0.386 3.614 7 O -0.403 6.403 8 C -0.144 4.144 9 C -0.112 4.112 10 C -0.267 4.267 11 Br 0.053 6.947 12 C -0.085 4.085 13 N -0.134 5.134 14 H 0.268 0.732 15 C -0.044 4.044 16 C 0.065 3.935 17 H 0.088 0.912 18 N -0.347 5.347 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.203 4.203 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.210 1.210 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.174 0.826 33 H 0.197 0.803 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.222 0.778 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.643 -6.999 24.758 25.781 hybrid contribution -0.368 0.474 -1.271 1.406 sum -2.011 -6.525 23.487 24.459 Atomic orbital electron populations 1.21695 0.93633 1.01607 1.02442 1.22515 0.96588 0.99950 0.94160 0.89319 1.22299 0.87770 0.94452 0.98411 1.48424 1.29419 1.43795 1.12984 1.16641 0.81838 0.79451 0.83501 1.90864 1.32164 1.45093 1.72153 1.20549 0.94849 1.06261 0.92754 1.21167 1.00382 1.00276 0.89338 1.20983 1.02523 1.10075 0.93072 1.96608 1.89550 1.82621 1.25963 1.21896 0.99834 1.00414 0.86378 1.42774 1.24096 1.38870 1.07632 0.73153 1.23531 1.02032 1.01333 0.77552 1.21374 0.91909 0.93616 0.86572 0.91217 1.42259 1.86116 1.06185 1.00108 1.19204 1.43228 0.92740 0.83024 0.90950 1.24767 1.02004 0.95438 0.98085 1.69640 1.55687 1.02749 1.29580 0.86246 0.77985 0.77851 0.83964 1.21108 1.21604 1.21023 0.92819 0.93190 0.90881 0.92010 0.91683 0.82562 0.80270 0.90536 0.91129 0.77832 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.16 37.16 0.34 -1.27 16 2 C -0.11 -1.51 3.20 -88.78 -0.28 -1.79 16 3 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 4 C 0.09 1.06 4.71 -3.06 -0.01 1.05 16 5 N -0.61 -9.20 3.33 -172.06 -0.57 -9.77 16 6 C 0.60 9.61 7.81 -12.86 -0.10 9.51 16 7 O -0.53 -10.41 17.12 5.19 0.09 -10.32 16 8 C -0.03 -0.39 6.89 -81.98 -0.56 -0.95 16 9 C -0.08 -1.05 10.64 -39.10 -0.42 -1.47 16 10 C -0.18 -1.88 6.53 -39.95 -0.26 -2.14 16 11 Br -0.03 -0.29 34.08 -68.01 -2.32 -2.61 16 12 C 0.05 0.45 11.86 -16.86 -0.20 0.25 16 13 N -0.53 -4.90 5.61 -9.36 -0.05 -4.96 16 14 H 0.42 2.99 4.96 -40.82 -0.20 2.79 16 15 C 0.08 1.44 6.63 -2.53 -0.02 1.42 16 16 C 0.18 3.19 3.16 -65.78 -0.21 2.98 16 17 H 0.07 1.29 8.00 -51.93 -0.42 0.87 16 18 N -0.71 -16.18 5.24 -51.35 -0.27 -16.45 16 19 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 22 N -0.93 -26.72 13.06 55.49 0.72 -26.00 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.59 8.06 -51.93 -0.42 0.17 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.56 7.12 -51.93 -0.37 0.19 16 31 H 0.07 0.60 6.84 -51.93 -0.36 0.24 16 32 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.08 1.51 7.99 -51.93 -0.41 1.09 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.39 9.39 7.76 -40.82 -0.32 9.08 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -30.91 330.77 -8.98 -39.89 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.57 Total: 7.99 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.97 Total: 0.61 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.17 Total: -57.17 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -2.32 Total: -2.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.91 -8.98 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054874527.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.633 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds