Wall clock time and date at job start Sat Apr 11 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.78198 * 2 1 4 4 C 1.54328 * 110.71734 * 123.24277 * 2 1 3 5 5 N 1.47022 * 107.27127 * 140.55554 * 4 2 1 6 6 C 1.34771 * 125.64532 * 181.00969 * 5 4 2 7 7 O 1.21702 * 120.00053 * 175.00906 * 6 5 4 8 8 C 1.46673 * 120.00467 * 355.01315 * 6 5 4 9 9 C 1.37884 * 126.23036 * 185.58170 * 8 6 5 10 10 C 1.39875 * 107.09170 * 179.97438 * 9 8 6 11 11 Br 1.89101 * 126.07011 * 180.02562 * 10 9 8 12 12 C 1.35496 * 107.85733 * 359.97438 * 10 9 8 13 13 N 1.35607 * 108.85404 * 359.75514 * 12 10 9 14 14 H 0.96997 * 125.67234 * 180.27292 * 13 12 10 15 15 C 1.47424 * 108.70477 * 1.05476 * 5 4 2 16 16 C 1.54911 * 104.83167 * 335.87435 * 15 5 4 17 17 H 1.09002 * 111.00352 * 278.93771 * 16 15 5 18 18 N 1.46501 * 111.00362 * 155.08394 * 16 15 5 19 19 C 1.36935 * 120.00011 * 92.80947 * 18 16 15 20 20 H 1.08004 * 119.99832 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99864 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00277 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99661 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47302 * 59.99774 * 23 21 19 25 25 H 1.48504 * 109.46947 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47012 * 299.99282 * 23 21 19 27 27 H 1.08993 * 109.47265 * 183.23959 * 1 2 3 28 28 H 1.09000 * 109.46995 * 303.23975 * 1 2 3 29 29 H 1.09003 * 109.47000 * 63.23699 * 1 2 3 30 30 H 1.09004 * 109.87624 * 259.96763 * 4 2 1 31 31 H 1.08994 * 109.88430 * 21.13271 * 4 2 1 32 32 H 1.08004 * 126.44957 * 359.97438 * 9 8 6 33 33 H 1.07998 * 125.57694 * 179.97438 * 12 10 9 34 34 H 1.08995 * 110.36948 * 217.03587 * 15 5 4 35 35 H 1.09001 * 110.46197 * 94.75538 * 15 5 4 36 36 H 0.96994 * 119.99903 * 272.80176 * 18 16 15 37 37 H 0.96991 * 120.00007 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0760 -0.7913 1.2073 5 7 3.2445 -1.5509 0.7390 6 6 3.9923 -2.3835 1.4898 7 8 4.8843 -3.0317 0.9748 8 6 3.7311 -2.5088 2.9277 9 6 4.4788 -3.2332 3.8317 10 6 3.8757 -3.0755 5.0839 11 35 4.4659 -3.8426 6.7084 12 6 2.7942 -2.2746 4.9263 13 7 2.6989 -1.9188 3.6212 14 1 2.0156 -1.3458 3.2396 15 6 3.4633 -1.2499 -0.6875 16 6 2.0790 -0.7955 -1.2138 17 1 1.4451 -1.6536 -1.4374 18 7 2.2215 0.0695 -2.3875 19 6 2.1867 -0.4714 -3.6450 20 1 2.0545 -1.5358 -3.7715 21 6 2.3223 0.3482 -4.7571 22 7 2.4839 1.6453 -4.6030 23 14 2.2755 -0.3899 -6.4725 24 1 0.9718 -1.0687 -6.6839 25 1 2.4406 0.6885 -7.4800 26 1 3.3763 -1.3760 -6.6173 27 1 -0.3633 -1.0259 0.0581 28 1 -0.3633 0.5633 0.8595 29 1 -0.3633 0.4628 -0.9176 30 1 2.3741 -0.1024 1.9977 31 1 1.3129 -1.4758 1.5776 32 1 5.3636 -3.8131 3.6139 33 1 2.1205 -1.9668 5.7121 34 1 3.7959 -2.1427 -1.2169 35 1 4.1936 -0.4487 -0.8003 36 1 2.3405 1.0254 -2.2739 37 1 2.5783 2.2180 -5.3801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054874527.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:52 Heat of formation + Delta-G solvation = 12.282330 kcal Electronic energy + Delta-G solvation = -21391.467951 eV Core-core repulsion = 18022.394579 eV Total energy + Delta-G solvation = -3369.073373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.58961 -40.73308 -38.95819 -36.05871 -34.05223 -33.22655 -32.52195 -31.21550 -30.43738 -28.74631 -27.51313 -26.02502 -24.07583 -22.28643 -21.77664 -21.28125 -21.11082 -19.40096 -18.71985 -17.71095 -17.18336 -16.49586 -16.46850 -15.76654 -15.44888 -15.13577 -14.98339 -14.71598 -14.45534 -14.31419 -14.03843 -13.78984 -13.75201 -13.35020 -13.07540 -12.91285 -12.86701 -12.29082 -12.25297 -12.07770 -12.04556 -11.77892 -11.51521 -11.35355 -11.10662 -10.97969 -10.05562 -9.80587 -9.31391 -9.08995 -7.99217 -5.28841 0.27745 0.79111 1.34599 1.46705 1.48853 1.54475 1.68814 2.12496 2.18805 2.53840 3.28847 3.40381 3.46082 3.75350 3.93053 4.03365 4.07398 4.16016 4.21956 4.33684 4.38438 4.51858 4.56247 4.79124 4.80056 4.86114 4.97739 5.07703 5.13804 5.31547 5.32090 5.46620 5.49838 5.54693 6.22221 6.26081 6.36647 6.91269 7.30201 8.00586 8.24866 9.23014 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.002257 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.582491 B =12405.531657 C =12986.324352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.095 3.905 5 N -0.611 5.611 6 C 0.594 3.406 7 O -0.579 6.579 8 C -0.054 4.054 9 C -0.091 4.091 10 C -0.203 4.203 11 Br -0.023 7.023 12 C 0.093 3.907 13 N -0.518 5.518 14 H 0.437 0.563 15 C 0.090 3.910 16 C 0.173 3.827 17 H 0.065 0.935 18 N -0.717 5.717 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.066 4.066 22 N -0.963 5.963 23 Si 0.968 3.032 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.283 1.283 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.143 0.857 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.378 0.622 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -6.430 27.688 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.027 4.027 5 N -0.344 5.344 6 C 0.385 3.615 7 O -0.459 6.459 8 C -0.168 4.168 9 C -0.119 4.119 10 C -0.288 4.288 11 Br 0.061 6.939 12 C -0.049 4.049 13 N -0.120 5.120 14 H 0.283 0.717 15 C -0.036 4.036 16 C 0.061 3.939 17 H 0.083 0.917 18 N -0.356 5.356 19 C -0.380 4.380 20 H 0.091 0.909 21 C -0.259 4.259 22 N -0.613 5.613 23 Si 0.797 3.203 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.210 1.210 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.161 0.839 33 H 0.243 0.757 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.211 0.789 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.719 -7.076 27.726 28.855 hybrid contribution 0.279 0.428 -2.022 2.086 sum -3.440 -6.647 25.703 26.771 Atomic orbital electron populations 1.21665 0.91794 1.02705 1.02657 1.22412 0.97994 0.99228 0.92441 0.89736 1.22545 0.86995 0.95118 0.98021 1.48383 1.30472 1.44013 1.11514 1.17082 0.81007 0.78595 0.84811 1.90826 1.34432 1.47219 1.73451 1.19905 0.97161 1.08761 0.90941 1.21235 1.00145 0.99923 0.90622 1.21116 1.03519 1.11446 0.92715 1.96621 1.89729 1.82692 1.24863 1.22601 0.98596 0.97292 0.86389 1.42673 1.23248 1.38384 1.07667 0.71658 1.23088 1.01419 0.99334 0.79773 1.21525 0.91819 0.93648 0.86865 0.91691 1.42342 1.86309 1.06249 1.00696 1.19534 1.41113 0.92793 0.84515 0.90879 1.25480 1.03081 0.95895 1.01407 1.69773 1.57800 1.03786 1.29926 0.85309 0.78137 0.76882 0.80003 1.20140 1.22078 1.20966 0.91714 0.89452 0.93761 0.88640 0.88376 0.83930 0.75733 0.93380 0.93013 0.78879 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.16 71.98 0.66 -2.03 16 2 C -0.10 -2.51 3.20 -9.60 -0.03 -2.55 16 3 H 0.08 2.22 8.00 -2.39 -0.02 2.20 16 4 C 0.10 1.83 4.71 86.73 0.41 2.23 16 5 N -0.61 -17.94 3.33 -816.49 -2.72 -20.65 16 6 C 0.59 19.12 7.81 86.45 0.68 19.79 16 7 O -0.58 -23.99 17.12 -4.35 -0.07 -24.06 16 8 C -0.05 -1.30 6.89 40.35 0.28 -1.02 16 9 C -0.09 -2.18 10.64 22.58 0.24 -1.94 16 10 C -0.20 -3.65 6.53 22.03 0.14 -3.51 16 11 Br -0.02 -0.37 34.08 -20.37 -0.69 -1.06 16 12 C 0.09 1.09 11.86 83.48 0.99 2.08 16 13 N -0.52 -7.34 5.61 -183.54 -1.03 -8.37 16 14 H 0.44 3.78 4.96 -92.71 -0.46 3.32 16 15 C 0.09 3.34 6.63 86.86 0.58 3.91 16 16 C 0.17 6.21 3.16 46.38 0.15 6.35 16 17 H 0.07 2.40 8.00 -2.39 -0.02 2.38 16 18 N -0.72 -33.63 5.24 -316.36 -1.66 -35.29 16 19 C -0.25 -13.22 9.96 84.03 0.84 -12.38 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 22 N -0.96 -56.77 13.06 21.65 0.28 -56.48 16 23 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 27 H 0.06 1.20 8.06 -2.39 -0.02 1.18 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.28 7.12 -2.38 -0.02 1.26 16 31 H 0.10 1.30 6.84 -2.39 -0.02 1.29 16 32 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.23 0.60 8.06 -2.91 -0.02 0.58 16 34 H 0.05 2.02 7.99 -2.39 -0.02 2.00 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.38 18.90 7.76 -92.71 -0.72 18.18 16 37 H 0.25 14.55 8.31 -92.72 -0.77 13.78 16 Total: -1.00 -71.48 330.77 1.46 -70.02 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.07 Total: 20.85 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.39 Total: 7.76 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -5.12 Total: -120.79 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.07 Total: -24.06 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.69 Total: -1.06 kcal Total: -71.48 1.46 -70.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054874527.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.302 kcal (2) G-P(sol) polarization free energy of solvation -71.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds