Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.92405 * 2 1 4 4 C 1.54909 * 111.00341 * 236.09474 * 2 1 3 5 5 N 1.47428 * 104.83507 * 204.91845 * 4 2 1 6 6 C 1.36934 * 125.65269 * 204.09298 * 5 4 2 7 7 H 1.08001 * 119.99677 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00239 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00127 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00121 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47489 * 59.99443 * 10 8 6 12 12 H 1.48502 * 109.47421 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47169 * 299.99593 * 10 8 6 14 14 C 1.47019 * 108.69962 * 24.13217 * 5 4 2 15 15 C 1.54327 * 107.27357 * 358.93660 * 14 5 4 16 16 H 1.09000 * 110.71923 * 96.34948 * 15 14 5 17 17 N 1.46502 * 110.72229 * 219.44440 * 15 14 5 18 18 C 1.34768 * 120.00139 * 273.54778 * 17 15 14 19 19 O 1.21697 * 120.00046 * 0.02562 * 18 17 15 20 20 C 1.46674 * 119.99967 * 179.97438 * 18 17 15 21 21 C 1.37885 * 126.22538 * 180.02562 * 20 18 17 22 22 C 1.39875 * 107.09375 * 180.02562 * 21 20 18 23 23 Br 1.89106 * 126.07668 * 179.97438 * 22 21 20 24 24 C 1.35500 * 107.85199 * 0.02562 * 22 21 20 25 25 N 1.35600 * 108.85993 * 359.97438 * 24 22 21 26 26 H 0.96994 * 125.68045 * 179.97438 * 25 24 22 27 27 H 1.09004 * 109.46772 * 296.10322 * 1 2 3 28 28 H 1.09005 * 109.46516 * 56.09895 * 1 2 3 29 29 H 1.08996 * 109.47490 * 176.09900 * 1 2 3 30 30 H 1.08997 * 110.36621 * 86.08154 * 4 2 1 31 31 H 1.08997 * 110.46277 * 323.80803 * 4 2 1 32 32 H 0.97000 * 120.00400 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.88070 * 239.52050 * 14 5 4 34 34 H 1.08997 * 110.01432 * 118.43000 * 14 5 4 35 35 H 0.96997 * 119.99239 * 93.54542 * 17 15 14 36 36 H 1.08004 * 126.45645 * 359.75265 * 21 20 18 37 37 H 1.08006 * 125.57203 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9193 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4640 -1.5669 -1.6071 7 1 4.3333 -1.5120 -2.6778 8 6 5.6830 -1.9657 -1.0763 9 7 5.8424 -2.0322 0.2285 10 14 7.0976 -2.4066 -2.2137 11 1 7.4400 -1.2325 -3.0561 12 1 8.2803 -2.7965 -1.4047 13 1 6.6975 -3.5408 -3.0847 14 6 3.4674 -1.2743 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4477 -1.6632 1.4239 17 7 2.2286 0.0495 2.3815 18 6 2.3021 -0.5005 3.6097 19 8 2.2505 -1.7095 3.7391 20 6 2.4454 0.3580 4.7903 21 6 2.5327 -0.0651 6.0997 22 6 2.6580 1.0793 6.8941 23 35 2.8163 1.1152 8.7782 24 6 2.6446 2.1578 6.0739 25 7 2.5161 1.7326 4.7927 26 1 2.4794 2.3023 4.0086 27 1 -0.3633 0.4522 0.9229 28 1 -0.3632 0.5732 -0.8530 29 1 -0.3634 -1.0252 -0.0699 30 1 2.1560 -0.1721 -2.0836 31 1 1.4524 -1.6704 -1.4043 32 1 6.6944 -2.3105 0.5995 33 1 4.2426 -0.5999 1.0599 34 1 3.6660 -2.2885 1.0424 35 1 2.2701 1.0131 2.2783 36 1 2.5048 -1.0874 6.4470 37 1 2.7235 3.1878 6.3891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080071201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = 36.631004 kcal Electronic energy + Delta-G solvation = -21521.282710 eV Core-core repulsion = 18153.265175 eV Total energy + Delta-G solvation = -3368.017535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.48930 -39.23395 -37.43811 -34.06519 -32.83156 -32.23198 -30.41896 -30.23620 -29.17662 -27.52146 -25.67734 -24.02495 -22.62250 -20.63800 -20.36816 -20.15682 -19.78322 -18.58349 -16.93039 -16.00933 -15.75840 -15.21857 -14.89384 -14.26649 -13.91639 -13.87307 -13.65710 -13.28209 -12.97689 -12.86346 -12.85434 -12.65449 -12.02636 -11.75095 -11.40102 -11.23019 -11.05916 -10.79069 -10.69787 -10.46631 -10.35475 -10.04214 -9.98485 -9.84722 -9.69726 -9.01371 -8.71094 -8.61013 -8.36933 -6.86401 -5.70707 -3.06590 1.35562 1.61612 2.26000 2.90264 3.33447 3.40222 3.44500 3.46399 3.51357 4.48707 4.69822 4.81861 4.97706 5.05517 5.24150 5.36051 5.47676 5.52664 5.68887 5.74840 5.90003 5.91354 6.07280 6.11884 6.26401 6.28745 6.41705 6.46733 6.57335 6.64596 6.85624 7.02137 7.50693 7.54630 7.75438 7.83418 8.23303 8.40103 9.19576 9.80309 10.44678 11.39783 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002699 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.762065 B =10370.817183 C =11530.459172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.234 4.234 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.913 3.087 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.173 3.827 15 C 0.122 3.878 16 H 0.090 0.910 17 N -0.711 5.711 18 C 0.586 3.414 19 O -0.518 6.518 20 C -0.030 4.030 21 C -0.084 4.084 22 C -0.180 4.180 23 Br -0.032 7.032 24 C 0.057 3.943 25 N -0.530 5.530 26 H 0.423 0.577 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.023 0.977 32 H 0.254 0.746 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.388 0.612 36 H 0.157 0.843 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 12.624 14.368 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.332 5.332 6 C -0.362 4.362 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.565 5.565 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.048 3.952 15 C 0.017 3.983 16 H 0.108 0.892 17 N -0.361 5.361 18 C 0.371 3.629 19 O -0.393 6.393 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.266 4.266 23 Br 0.052 6.948 24 C -0.083 4.083 25 N -0.126 5.126 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.221 0.779 36 H 0.175 0.825 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.071 11.695 14.975 21.505 hybrid contribution 0.897 0.601 -1.316 1.703 sum -9.174 12.297 13.659 20.541 Atomic orbital electron populations 1.21708 0.94945 1.01972 1.00939 1.22614 0.94866 0.99405 0.96439 0.90572 1.21586 0.87696 0.95062 0.94224 1.44395 1.07850 1.79270 1.01732 1.18992 0.89319 1.38966 0.88888 0.90363 1.24833 0.97901 1.01572 0.96015 1.69953 1.24352 1.53001 1.09208 0.86200 0.81836 0.78265 0.79423 1.21212 1.21573 1.21098 1.21475 0.89801 1.00584 0.83380 1.22558 1.00590 0.92654 0.82494 0.89191 1.45811 1.74433 1.09691 1.06136 1.16905 0.77196 0.87203 0.81552 1.90880 1.49769 1.13189 1.85500 1.20660 1.15885 0.81981 0.95831 1.21185 1.01676 0.98751 0.89525 1.20965 1.19250 0.95642 0.90793 1.96600 1.97676 1.99126 1.01435 1.21819 1.04955 0.99100 0.82431 1.42051 1.55438 1.06773 1.08335 0.73883 0.93192 0.92708 0.92424 0.93955 0.95933 0.93602 0.93229 0.93210 0.77870 0.82536 0.80340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.31 37.16 0.35 -1.37 16 2 C -0.11 -1.79 3.25 -88.47 -0.29 -2.08 16 3 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 4 C 0.14 2.78 6.70 -2.53 -0.02 2.77 16 5 N -0.61 -15.30 3.39 -170.07 -0.58 -15.87 16 6 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16 10 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.17 4.24 5.12 -3.06 -0.02 4.22 16 15 C 0.12 2.24 2.70 -66.09 -0.18 2.06 16 16 H 0.09 1.77 7.59 -51.93 -0.39 1.38 16 17 N -0.71 -10.82 5.13 -53.33 -0.27 -11.10 16 18 C 0.59 9.84 7.78 -12.86 -0.10 9.74 16 19 O -0.52 -10.95 16.61 5.19 0.09 -10.86 16 20 C -0.03 -0.40 7.06 -81.98 -0.58 -0.98 16 21 C -0.08 -1.14 10.63 -39.10 -0.42 -1.56 16 22 C -0.18 -2.04 6.53 -39.95 -0.26 -2.30 16 23 Br -0.03 -0.33 34.08 -68.01 -2.32 -2.64 16 24 C 0.06 0.50 11.86 -16.86 -0.20 0.30 16 25 N -0.53 -4.93 6.00 -9.36 -0.06 -4.99 16 26 H 0.42 2.61 8.19 -40.82 -0.33 2.28 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.02 0.45 7.99 -51.93 -0.41 0.03 16 32 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.05 1.34 7.27 -51.93 -0.38 0.96 16 34 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 35 H 0.39 4.51 7.65 -40.82 -0.31 4.20 16 36 H 0.16 2.17 8.06 -52.48 -0.42 1.74 16 37 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 332.05 15.07 5.00 5.00 Total: -1.00 -33.88 332.05 -9.26 -43.15 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.72 Total: 3.11 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.96 Total: 3.89 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.33 Total: -58.82 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.32 Total: -2.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.88 -9.26 -43.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080071201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.777 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds