Wall clock time and date at job start Sat Apr 11 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 120.00054 * 2 1 4 4 N 1.46502 * 109.47305 * 125.00146 * 3 2 1 5 5 C 1.46505 * 120.00062 * 265.76807 * 4 3 2 6 6 C 1.50702 * 109.46815 * 269.99813 * 5 4 3 7 7 H 1.08000 * 120.00271 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99411 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99501 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00455 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47174 * 89.99421 * 10 8 6 12 12 H 1.48492 * 109.47097 * 209.99913 * 10 8 6 13 13 H 1.48503 * 109.46807 * 329.99695 * 10 8 6 14 14 C 1.34775 * 119.99899 * 85.76316 * 4 3 2 15 15 O 1.21576 * 119.99684 * 174.66471 * 14 4 3 16 16 C 1.47673 * 120.00089 * 354.93986 * 14 4 3 17 17 N 1.31807 * 126.46280 * 353.89484 * 16 14 4 18 18 N 1.28468 * 110.13346 * 179.87905 * 17 16 14 19 19 C 1.46503 * 124.93937 * 180.17241 * 18 17 16 20 20 C 1.35626 * 110.13117 * 0.38989 * 18 17 16 21 21 C 1.50698 * 126.43364 * 179.74894 * 20 18 17 22 22 C 1.35439 * 107.13187 * 359.76292 * 20 18 17 23 23 Br 1.89105 * 127.23728 * 180.02562 * 22 20 18 24 24 H 1.07998 * 120.00080 * 180.02562 * 1 2 3 25 25 H 1.08010 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99826 * 179.97438 * 2 1 3 27 27 H 1.09009 * 109.47386 * 4.99932 * 3 2 1 28 28 H 1.08998 * 109.47254 * 245.00177 * 3 2 1 29 29 H 1.09000 * 109.46806 * 29.99564 * 5 4 3 30 30 H 1.08992 * 109.47234 * 149.99812 * 5 4 3 31 31 H 0.97000 * 120.00273 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47069 * 270.24690 * 19 18 17 33 33 H 1.09000 * 109.46723 * 30.24561 * 19 18 17 34 34 H 1.08994 * 109.47495 * 150.24384 * 19 18 17 35 35 H 1.09000 * 109.46439 * 269.99281 * 21 20 18 36 36 H 1.08995 * 109.47254 * 29.99279 * 21 20 18 37 37 H 1.08994 * 109.46864 * 149.99865 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5901 1.9489 2.3973 6 6 2.9594 3.4099 2.3843 7 1 3.4458 3.8363 1.5194 8 6 2.6753 4.2025 3.4762 9 7 2.9980 5.4774 3.4650 10 14 1.8333 3.4652 4.9718 11 1 2.8596 2.9594 5.9184 12 1 1.0127 4.5061 5.6412 13 1 0.9584 2.3439 4.5447 14 6 4.2211 0.7888 1.0077 15 8 5.0272 0.8960 1.9115 16 6 4.5888 0.0688 -0.2281 17 7 3.7890 -0.2156 -1.2364 18 7 4.4356 -0.8477 -2.1490 19 6 3.8610 -1.3168 -3.4124 20 6 5.7264 -1.0219 -1.7709 21 6 6.8038 -1.7198 -2.5603 22 6 5.8651 -0.4512 -0.5505 23 35 7.4344 -0.3664 0.5013 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.5121 1.8477 2.5232 30 1 3.1004 1.4525 3.2226 31 1 2.7986 6.0350 4.2333 32 1 3.4678 -2.3248 -3.2806 33 1 3.0544 -0.6488 -3.7148 34 1 4.6330 -1.3257 -4.1816 35 1 6.8127 -2.7794 -2.3049 36 1 6.6058 -1.6046 -3.6259 37 1 7.7720 -1.2802 -2.3210 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521617283.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:20 Heat of formation + Delta-G solvation = 87.957230 kcal Electronic energy + Delta-G solvation = -22016.055089 eV Core-core repulsion = 18650.263226 eV Total energy + Delta-G solvation = -3365.791863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.72208 -38.80527 -35.66886 -33.76542 -33.19693 -33.02256 -31.97681 -30.32309 -28.69546 -27.20450 -26.79410 -25.43656 -23.31515 -21.36148 -20.58580 -19.87819 -18.28001 -17.00128 -16.83775 -16.55671 -16.07690 -15.33370 -14.65769 -14.29983 -14.11677 -13.84171 -13.67271 -13.44145 -13.07649 -12.96013 -12.72635 -12.64496 -12.47816 -12.25375 -11.69218 -11.55012 -11.07303 -10.97206 -10.87379 -10.61351 -10.45815 -10.09236 -10.00565 -9.47421 -9.17578 -9.00358 -8.95390 -8.59579 -8.51021 -7.64799 -6.00846 -3.98965 1.64431 1.73291 1.94073 2.53179 2.57988 3.35655 3.41466 3.43690 3.81433 3.99183 4.29449 4.39463 4.46874 4.69300 4.77068 4.89752 5.05150 5.20346 5.26053 5.33402 5.40670 5.50171 5.54163 5.59692 5.86501 6.04930 6.16865 6.32847 6.60261 6.80338 6.91429 7.00393 7.02690 7.45004 7.68154 7.82182 8.29051 8.54236 8.97728 9.05177 9.59364 11.12649 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.004889 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.218580 B = 5725.763740 C = 7362.008894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C 0.139 3.861 4 N -0.575 5.575 5 C 0.219 3.781 6 C -0.525 4.525 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.583 3.417 15 O -0.508 6.508 16 C 0.030 3.970 17 N -0.246 5.246 18 N -0.289 5.289 19 C 0.088 3.912 20 C 0.041 3.959 21 C -0.086 4.086 22 C -0.160 4.160 23 Br 0.009 6.991 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -17.967 -16.721 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.157 4.157 3 C 0.015 3.985 4 N -0.305 5.305 5 C 0.099 3.901 6 C -0.563 4.563 7 H 0.094 0.906 8 C -0.129 4.129 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.367 3.633 15 O -0.381 6.381 16 C -0.133 4.133 17 N -0.080 5.080 18 N -0.076 5.076 19 C -0.052 4.052 20 C -0.086 4.086 21 C -0.144 4.144 22 C -0.250 4.250 23 Br 0.093 6.907 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.908 -17.599 -16.196 24.234 hybrid contribution -0.145 -0.373 0.691 0.798 sum 3.764 -17.971 -15.505 24.032 Atomic orbital electron populations 1.23748 0.95825 1.01385 1.03092 1.23324 0.95678 0.99227 0.97512 1.20728 0.92776 0.94892 0.90084 1.47755 1.12465 1.55571 1.14758 1.19709 0.95265 0.94197 0.80932 1.21321 1.39644 0.91569 1.03802 0.90648 1.24830 0.95332 0.94680 0.98045 1.69900 1.47574 1.05401 1.30800 0.86886 0.80145 0.79180 0.83743 1.19855 1.21127 1.18997 1.16837 0.82754 0.79339 0.84379 1.90836 1.48534 1.59066 1.39625 1.22209 0.90603 1.04153 0.96318 1.74016 1.23330 1.12335 0.98317 1.45578 1.06331 1.40233 1.15505 1.22153 1.00767 1.01500 0.80790 1.21201 0.87712 1.04046 0.95671 1.20421 0.95469 1.00187 0.98366 1.21666 0.95180 1.10969 0.97219 1.96638 1.27182 1.98028 1.68871 0.89151 0.88510 0.87977 0.89717 0.89235 0.94973 0.94498 0.92642 0.89701 0.88220 0.88765 0.89887 0.90775 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.77 14.32 29.01 0.42 -2.35 16 2 C -0.14 -2.15 8.74 -36.03 -0.31 -2.47 16 3 C 0.14 2.53 5.43 -5.20 -0.03 2.50 16 4 N -0.57 -12.92 2.45 -177.61 -0.44 -13.35 16 5 C 0.22 5.60 4.17 -5.19 -0.02 5.57 16 6 C -0.52 -15.52 9.94 -34.44 -0.34 -15.86 16 7 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 8 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 9 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 10 Si 0.87 22.06 27.47 -169.99 -4.67 17.39 16 11 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 C 0.58 13.26 7.63 -12.41 -0.09 13.17 16 15 O -0.51 -13.11 15.25 5.30 0.08 -13.03 16 16 C 0.03 0.56 6.72 -82.77 -0.56 0.00 16 17 N -0.25 -3.76 7.14 33.42 0.24 -3.52 16 18 N -0.29 -3.35 3.72 -63.69 -0.24 -3.58 16 19 C 0.09 0.52 11.12 59.85 0.67 1.18 16 20 C 0.04 0.49 6.94 -81.92 -0.57 -0.08 16 21 C -0.09 -0.63 9.95 36.00 0.36 -0.27 16 22 C -0.16 -2.60 6.67 -39.32 -0.26 -2.86 16 23 Br 0.01 0.14 32.30 -68.01 -2.20 -2.05 16 24 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 25 H 0.10 1.29 7.84 -52.48 -0.41 0.88 16 26 H 0.10 1.61 7.28 -52.49 -0.38 1.23 16 27 H 0.08 1.57 7.69 -51.92 -0.40 1.17 16 28 H 0.09 1.57 5.84 -51.93 -0.30 1.27 16 29 H 0.03 0.79 7.13 -51.93 -0.37 0.42 16 30 H 0.04 0.99 6.93 -51.93 -0.36 0.63 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.29 6.98 -51.93 -0.36 -0.07 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.34 7.02 -51.93 -0.36 -0.02 16 37 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -36.22 333.60 -6.91 -43.13 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.64 Total: -3.16 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -0.85 Total: 0.62 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.34 Total: -47.93 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -2.20 Total: -2.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.22 -6.91 -43.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521617283.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.086 kcal (2) G-P(sol) polarization free energy of solvation -36.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds