Wall clock time and date at job start Sat Apr 11 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38115 * 120.33554 * 2 1 4 4 N 1.31916 * 120.86246 * 180.02562 * 3 2 1 5 5 C 1.32357 * 121.64956 * 0.02562 * 4 3 2 6 6 N 1.39434 * 119.70509 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00062 * 0.02562 * 6 5 4 8 8 O 1.21283 * 119.99662 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00388 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.47069 * 39.99313 * 9 7 6 11 11 N 1.46905 * 109.47066 * 159.99692 * 9 7 6 12 12 C 1.53000 * 109.46922 * 279.99515 * 9 7 6 13 13 C 1.52994 * 109.47061 * 174.99828 * 12 9 7 14 14 C 1.50701 * 109.47294 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00041 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00211 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00073 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00331 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47033 * 89.99789 * 18 16 14 20 20 H 1.48491 * 109.47261 * 210.00271 * 18 16 14 21 21 H 1.48498 * 109.46657 * 330.00089 * 18 16 14 22 22 C 1.39082 * 120.59589 * 359.97438 * 5 4 3 23 23 Br 1.89097 * 120.45727 * 180.02562 * 22 5 4 24 24 C 1.38471 * 119.08660 * 0.02562 * 22 5 4 25 25 H 1.08996 * 109.47282 * 90.00308 * 1 2 3 26 26 H 1.09005 * 109.47119 * 209.99713 * 1 2 3 27 27 H 1.09004 * 109.47720 * 329.99944 * 1 2 3 28 28 H 1.07992 * 119.57242 * 359.74270 * 3 2 1 29 29 H 0.96998 * 120.00228 * 179.97438 * 6 5 4 30 30 H 1.00892 * 110.99760 * 296.03970 * 11 9 7 31 31 H 1.00895 * 110.99840 * 60.00147 * 11 9 7 32 32 H 1.09000 * 109.47087 * 295.00377 * 12 9 7 33 33 H 1.09003 * 109.46878 * 54.99681 * 12 9 7 34 34 H 1.09005 * 109.47258 * 299.99921 * 13 12 9 35 35 H 1.09003 * 109.47395 * 60.00170 * 13 12 9 36 36 H 0.97001 * 120.00070 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.76176 * 180.02562 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1920 0.0000 4 7 3.5236 1.2042 -0.0005 5 6 4.2285 0.0839 -0.0015 6 7 5.6215 0.1440 -0.0026 7 6 6.2445 1.3392 -0.0020 8 8 5.5933 2.3624 -0.0011 9 6 7.7501 1.4043 -0.0037 10 1 8.1462 0.6341 -0.6655 11 7 8.1825 2.7262 -0.4766 12 6 8.2720 1.1746 1.4160 13 6 9.8007 1.1164 1.3942 14 6 10.3149 0.8895 2.7925 15 1 9.6207 0.7966 3.6146 16 6 11.6714 0.8017 3.0224 17 7 12.1201 0.6042 4.2429 18 14 12.8723 0.9645 1.6008 19 1 13.2453 2.3915 1.4290 20 1 14.0905 0.1654 1.8879 21 1 12.2354 0.4660 0.3554 22 6 3.5921 -1.1528 -0.0016 23 35 4.6030 -2.7509 -0.0023 24 6 2.2082 -1.1977 -0.0011 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3635 0.8900 0.5138 28 1 1.6631 2.1264 -0.0042 29 1 6.1423 -0.6743 -0.0030 30 1 7.9054 2.8758 -1.4351 31 1 7.8278 3.4577 0.1209 32 1 7.9487 1.9933 2.0589 33 1 7.8780 0.2337 1.8002 34 1 10.1240 0.2976 0.7513 35 1 10.1947 2.0573 1.0100 36 1 13.0745 0.5420 4.4046 37 1 1.6862 -2.1432 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579822055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:36 Heat of formation + Delta-G solvation = 3.153148 kcal Electronic energy + Delta-G solvation = -21002.212344 eV Core-core repulsion = 17632.743100 eV Total energy + Delta-G solvation = -3369.469244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15634 -39.52011 -35.81157 -35.21795 -33.61615 -32.78691 -32.55929 -30.53176 -29.94882 -27.78195 -26.39335 -24.52547 -23.44797 -22.03928 -20.59853 -19.98818 -18.51862 -17.54472 -16.70880 -16.21852 -15.74216 -15.48266 -15.32705 -14.96126 -14.42151 -14.21382 -14.09031 -13.59678 -13.50055 -13.23971 -12.85748 -12.62505 -12.42534 -12.32324 -11.76671 -11.62479 -11.08307 -10.92326 -10.83271 -10.78920 -10.49273 -10.03981 -9.79262 -9.78782 -9.68450 -9.46716 -9.12237 -8.54834 -8.43961 -8.41448 -5.99460 -3.97329 0.53987 0.85759 1.17413 2.56017 2.65463 3.37602 3.44088 3.45673 3.49182 4.07983 4.26815 4.51094 4.52825 4.54318 4.67286 4.70906 4.92841 5.20006 5.26114 5.28990 5.33547 5.36444 5.51502 5.58735 5.76048 5.94715 6.23583 6.32317 6.43615 6.82361 6.91062 7.22693 7.36475 7.53638 7.59586 7.68594 7.85305 8.09320 8.57622 9.05169 9.63276 11.14010 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.003216 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.481736 B = 8704.774734 C = 9763.372264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.174 4.174 3 C 0.149 3.851 4 N -0.464 5.464 5 C 0.392 3.608 6 N -0.658 5.658 7 C 0.475 3.525 8 O -0.478 6.478 9 C 0.078 3.922 10 H 0.102 0.898 11 N -0.807 5.807 12 C -0.089 4.089 13 C -0.004 4.004 14 C -0.522 4.522 15 H 0.069 0.931 16 C 0.066 3.934 17 N -0.906 5.906 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.264 1.264 22 C -0.187 4.187 23 Br -0.030 7.030 24 C -0.018 4.018 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.165 0.835 29 H 0.421 0.579 30 H 0.337 0.663 31 H 0.352 0.648 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.014 0.986 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.184 -6.552 -12.841 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.179 4.179 3 C -0.011 4.011 4 N -0.178 5.178 5 C 0.158 3.842 6 N -0.306 5.306 7 C 0.260 3.740 8 O -0.347 6.347 9 C -0.039 4.039 10 H 0.120 0.880 11 N -0.336 5.336 12 C -0.127 4.127 13 C -0.041 4.041 14 C -0.560 4.560 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.545 5.545 18 Si 0.710 3.290 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.273 4.273 23 Br 0.055 6.945 24 C -0.046 4.046 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.182 0.818 29 H 0.261 0.739 30 H 0.149 0.851 31 H 0.166 0.834 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.735 -5.798 -12.599 26.631 hybrid contribution -0.757 -0.732 -0.682 1.255 sum -23.492 -6.530 -13.281 27.765 Atomic orbital electron populations 1.20643 0.89492 1.03285 1.02600 1.20859 0.97982 0.93304 1.05736 1.22815 0.88708 0.97953 0.91575 1.67915 1.07956 1.26664 1.15231 1.18326 0.85794 0.87996 0.92089 1.44269 1.02996 1.11838 1.71524 1.23140 0.93245 0.82638 0.74951 1.90763 1.67188 1.33035 1.43739 1.21941 0.85395 0.94632 1.01888 0.88009 1.59034 1.64860 1.02546 1.07132 1.21514 1.00050 1.01241 0.89938 1.19485 0.89802 0.97338 0.97488 1.21169 0.92616 1.49341 0.92847 0.91276 1.25016 0.98425 0.94579 0.95486 1.69928 1.14085 1.50477 1.20047 0.86731 0.80437 0.78399 0.83417 1.20269 1.21718 1.18859 1.22344 0.95926 0.91567 1.17416 1.96764 1.70938 1.28950 1.97893 1.21247 0.90879 0.99253 0.93218 0.90964 0.91282 0.90988 0.81829 0.73945 0.85098 0.83390 0.91968 0.92109 0.96792 0.95127 0.92825 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 10.03 36.00 0.36 -0.16 16 2 C -0.17 -1.48 5.90 -104.46 -0.62 -2.09 16 3 C 0.15 1.59 10.85 -17.56 -0.19 1.40 16 4 N -0.46 -6.73 7.87 -12.34 -0.10 -6.83 16 5 C 0.39 5.39 7.43 -154.65 -1.15 4.24 16 6 N -0.66 -9.09 5.34 -11.40 -0.06 -9.15 16 7 C 0.48 7.46 7.03 -10.99 -0.08 7.38 16 8 O -0.48 -8.67 14.50 5.55 0.08 -8.59 16 9 C 0.08 1.21 3.15 -68.86 -0.22 1.00 16 10 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 11 N -0.81 -12.36 8.44 -5.65 -0.05 -12.41 16 12 C -0.09 -1.71 4.78 -26.73 -0.13 -1.84 16 13 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 14 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.20 13.96 55.43 0.77 -27.43 16 18 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 22 C -0.19 -2.09 6.26 -39.18 -0.25 -2.34 16 23 Br -0.03 -0.30 32.15 -68.01 -2.19 -2.48 16 24 C -0.02 -0.17 9.61 -39.29 -0.38 -0.54 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 27 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 28 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.42 5.07 7.08 -40.82 -0.29 4.78 16 30 H 0.34 4.42 9.06 -39.30 -0.36 4.06 16 31 H 0.35 5.50 8.58 -39.29 -0.34 5.16 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 35 H 0.03 0.73 7.18 -51.93 -0.37 0.36 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -34.25 334.86 -9.03 -43.28 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.69 Total: 7.78 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.18 Total: -6.52 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.57 Total: -55.82 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.19 Total: -2.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.25 -9.03 -43.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579822055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.430 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds