Wall clock time and date at job start Sat Apr 11 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38115 * 120.33554 * 2 1 4 4 N 1.31916 * 120.86246 * 180.02562 * 3 2 1 5 5 C 1.32357 * 121.64956 * 0.02562 * 4 3 2 6 6 N 1.39434 * 119.70509 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00062 * 0.02562 * 6 5 4 8 8 O 1.21283 * 119.99662 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00388 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.47069 * 39.99313 * 9 7 6 11 11 N 1.46905 * 109.47066 * 159.99692 * 9 7 6 12 12 C 1.53000 * 109.46922 * 279.99515 * 9 7 6 13 13 C 1.52994 * 109.47061 * 174.99828 * 12 9 7 14 14 C 1.50701 * 109.47294 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00041 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00211 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00073 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00331 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47033 * 89.99789 * 18 16 14 20 20 H 1.48491 * 109.47261 * 210.00271 * 18 16 14 21 21 H 1.48498 * 109.46657 * 330.00089 * 18 16 14 22 22 C 1.39082 * 120.59589 * 359.97438 * 5 4 3 23 23 Br 1.89097 * 120.45727 * 180.02562 * 22 5 4 24 24 C 1.38471 * 119.08660 * 0.02562 * 22 5 4 25 25 H 1.08996 * 109.47282 * 90.00308 * 1 2 3 26 26 H 1.09005 * 109.47119 * 209.99713 * 1 2 3 27 27 H 1.09004 * 109.47720 * 329.99944 * 1 2 3 28 28 H 1.07992 * 119.57242 * 359.74270 * 3 2 1 29 29 H 0.96998 * 120.00228 * 179.97438 * 6 5 4 30 30 H 1.00892 * 110.99760 * 296.03970 * 11 9 7 31 31 H 1.00895 * 110.99840 * 60.00147 * 11 9 7 32 32 H 1.09000 * 109.47087 * 295.00377 * 12 9 7 33 33 H 1.09003 * 109.46878 * 54.99681 * 12 9 7 34 34 H 1.09005 * 109.47258 * 299.99921 * 13 12 9 35 35 H 1.09003 * 109.47395 * 60.00170 * 13 12 9 36 36 H 0.97001 * 120.00070 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.76176 * 180.02562 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2045 1.1920 0.0000 4 7 3.5236 1.2042 -0.0005 5 6 4.2285 0.0839 -0.0015 6 7 5.6215 0.1440 -0.0026 7 6 6.2445 1.3392 -0.0020 8 8 5.5933 2.3624 -0.0011 9 6 7.7501 1.4043 -0.0037 10 1 8.1462 0.6341 -0.6655 11 7 8.1825 2.7262 -0.4766 12 6 8.2720 1.1746 1.4160 13 6 9.8007 1.1164 1.3942 14 6 10.3149 0.8895 2.7925 15 1 9.6207 0.7966 3.6146 16 6 11.6714 0.8017 3.0224 17 7 12.1201 0.6042 4.2429 18 14 12.8723 0.9645 1.6008 19 1 13.2453 2.3915 1.4290 20 1 14.0905 0.1654 1.8879 21 1 12.2354 0.4660 0.3554 22 6 3.5921 -1.1528 -0.0016 23 35 4.6030 -2.7509 -0.0023 24 6 2.2082 -1.1977 -0.0011 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3635 0.8900 0.5138 28 1 1.6631 2.1264 -0.0042 29 1 6.1423 -0.6743 -0.0030 30 1 7.9054 2.8758 -1.4351 31 1 7.8278 3.4577 0.1209 32 1 7.9487 1.9933 2.0589 33 1 7.8780 0.2337 1.8002 34 1 10.1240 0.2976 0.7513 35 1 10.1947 2.0573 1.0100 36 1 13.0745 0.5420 4.4046 37 1 1.6862 -2.1432 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579822055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:35 Heat of formation + Delta-G solvation = -21.144149 kcal Electronic energy + Delta-G solvation = -21003.265954 eV Core-core repulsion = 17632.743100 eV Total energy + Delta-G solvation = -3370.522854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11631 -40.58036 -37.05819 -36.44527 -34.81884 -34.41683 -33.37640 -32.31871 -30.73643 -28.92983 -27.61841 -25.68161 -24.67887 -22.93617 -22.16302 -21.31552 -19.53968 -18.91614 -18.50268 -17.27608 -16.96100 -16.53181 -16.22708 -16.11312 -15.94630 -15.39913 -15.15652 -15.01261 -14.69276 -14.22253 -14.03071 -13.84201 -13.54440 -13.33501 -12.94871 -12.83564 -12.56849 -12.46084 -12.02438 -11.84212 -11.76873 -11.63412 -11.55507 -11.33550 -11.23153 -10.71538 -10.57913 -10.44949 -9.72145 -9.27989 -8.24804 -6.28369 -0.29769 0.06882 0.35180 1.41209 1.42612 1.43438 1.56252 1.65286 2.41774 2.59970 3.11897 3.17166 3.43187 3.53340 3.75035 3.85591 3.94303 3.99728 4.09833 4.18857 4.56372 4.65697 4.70574 4.78816 4.87632 4.98056 5.10716 5.16848 5.22958 5.48274 5.53612 5.64162 5.72022 5.86596 6.06464 6.32148 6.45074 6.70932 6.80152 7.04508 7.36163 8.92189 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.003216 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.481736 B = 8704.774734 C = 9763.372264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.155 4.155 3 C 0.130 3.870 4 N -0.503 5.503 5 C 0.358 3.642 6 N -0.655 5.655 7 C 0.480 3.520 8 O -0.508 6.508 9 C 0.088 3.912 10 H 0.125 0.875 11 N -0.812 5.812 12 C -0.081 4.081 13 C 0.003 3.997 14 C -0.532 4.532 15 H 0.027 0.973 16 C 0.002 3.998 17 N -0.956 5.956 18 Si 0.954 3.046 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.239 1.239 22 C -0.188 4.188 23 Br -0.021 7.021 24 C -0.021 4.021 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.183 0.817 29 H 0.427 0.573 30 H 0.351 0.649 31 H 0.348 0.652 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.639 -7.443 -15.109 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.159 4.159 3 C -0.028 4.028 4 N -0.218 5.218 5 C 0.125 3.875 6 N -0.304 5.304 7 C 0.265 3.735 8 O -0.379 6.379 9 C -0.028 4.028 10 H 0.143 0.857 11 N -0.342 5.342 12 C -0.119 4.119 13 C -0.034 4.034 14 C -0.570 4.570 15 H 0.045 0.955 16 C -0.194 4.194 17 N -0.597 5.597 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.162 1.162 22 C -0.273 4.273 23 Br 0.063 6.937 24 C -0.048 4.048 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.200 0.800 29 H 0.267 0.733 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -24.237 -6.718 -14.889 29.227 hybrid contribution -0.482 -0.499 0.112 0.703 sum -24.719 -7.217 -14.777 29.690 Atomic orbital electron populations 1.20755 0.86615 1.04602 1.03886 1.21243 0.99816 0.92248 1.02597 1.23258 0.87849 0.99824 0.91909 1.67798 1.09843 1.27840 1.16292 1.18473 0.85548 0.88939 0.94496 1.44084 1.03611 1.11354 1.71307 1.22964 0.93049 0.82850 0.74642 1.90745 1.67690 1.34089 1.45391 1.21736 0.85629 0.95613 0.99798 0.85691 1.59030 1.64878 1.02230 1.08023 1.21287 0.97535 1.00780 0.92315 1.19368 0.92311 0.97460 0.94266 1.21555 0.92316 1.48728 0.94400 0.95454 1.26023 1.00684 0.94221 0.98469 1.70089 1.14709 1.52175 1.22722 0.85595 0.77651 0.78638 0.80340 1.19684 1.21364 1.16249 1.22474 0.96897 0.91072 1.16883 1.96766 1.71079 1.28003 1.97867 1.21681 0.90102 1.00762 0.92261 0.89487 0.89781 0.89924 0.80001 0.73257 0.83545 0.83799 0.93888 0.91822 0.95530 0.95122 0.92644 0.80734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.03 71.23 0.71 0.04 16 2 C -0.15 -2.26 5.90 -19.76 -0.12 -2.37 16 3 C 0.13 2.63 10.85 84.65 0.92 3.55 16 4 N -0.50 -14.55 7.87 -192.96 -1.52 -16.07 16 5 C 0.36 9.72 7.43 132.92 0.99 10.71 16 6 N -0.65 -17.90 5.34 -308.38 -1.65 -19.54 16 7 C 0.48 14.97 7.03 87.66 0.62 15.58 16 8 O -0.51 -18.60 14.50 -3.04 -0.04 -18.64 16 9 C 0.09 2.68 3.15 44.17 0.14 2.81 16 10 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 11 N -0.81 -23.97 8.44 -171.79 -1.45 -25.42 16 12 C -0.08 -3.11 4.78 30.59 0.15 -2.96 16 13 C 0.00 0.16 3.93 29.85 0.12 0.27 16 14 C -0.53 -30.93 9.66 25.60 0.25 -30.69 16 15 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 16 C 0.00 0.13 5.47 84.65 0.46 0.59 16 17 N -0.96 -60.97 13.96 21.45 0.30 -60.67 16 18 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 22 C -0.19 -3.97 6.26 22.53 0.14 -3.83 16 23 Br -0.02 -0.40 32.15 -20.37 -0.65 -1.05 16 24 C -0.02 -0.33 9.61 22.46 0.22 -0.11 16 25 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.08 0.36 8.09 -2.38 -0.02 0.34 16 27 H 0.08 0.42 8.09 -2.39 -0.02 0.40 16 28 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.43 10.02 7.08 -92.71 -0.66 9.36 16 30 H 0.35 8.69 9.06 -89.70 -0.81 7.87 16 31 H 0.35 10.80 8.58 -89.70 -0.77 10.03 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.03 1.16 7.20 -2.38 -0.02 1.14 16 35 H 0.03 1.42 7.18 -2.39 -0.02 1.40 16 36 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -75.98 334.86 0.29 -75.69 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -1.17 Total: 25.36 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 4.59 Total: -6.40 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -4.32 Total: -121.70 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.04 Total: -18.64 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.65 Total: -1.05 kcal Total: -75.98 0.29 -75.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579822055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.543 kcal (2) G-P(sol) polarization free energy of solvation -75.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds