Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00231 * 2 1 4 4 H 1.48497 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46724 * 299.99544 * 3 2 1 6 6 H 1.48497 * 109.47220 * 59.99487 * 3 2 1 7 7 C 1.37877 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46622 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47317 * 54.99996 * 11 10 9 13 13 N 1.46904 * 109.47517 * 294.99732 * 11 10 9 14 14 C 1.50705 * 109.46722 * 175.00057 * 11 10 9 15 15 O 1.21280 * 119.99877 * 99.99960 * 14 11 10 16 16 N 1.34771 * 120.00058 * 279.99533 * 14 11 10 17 17 C 1.46502 * 120.00236 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.47203 * 180.02562 * 17 16 14 19 19 C 1.38177 * 119.61186 * 94.97780 * 18 17 16 20 20 C 1.38755 * 119.14465 * 180.02562 * 19 18 17 21 21 Br 1.89103 * 120.79659 * 179.97438 * 20 19 18 22 22 C 1.38780 * 118.39864 * 0.02562 * 20 19 18 23 23 C 1.38140 * 119.15201 * 0.02562 * 22 20 19 24 24 N 1.31874 * 119.61098 * 275.00273 * 18 17 16 25 25 H 0.97006 * 119.99798 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47116 * 59.99720 * 9 7 2 27 27 H 1.08995 * 109.47109 * 299.99833 * 9 7 2 28 28 H 1.08994 * 109.47027 * 59.99999 * 10 9 7 29 29 H 1.08997 * 109.47084 * 299.99392 * 10 9 7 30 30 H 1.00900 * 110.99812 * 300.01160 * 13 11 10 31 31 H 1.00902 * 110.99356 * 63.95307 * 13 11 10 32 32 H 0.97004 * 119.99807 * 0.02562 * 16 14 11 33 33 H 1.09000 * 109.46668 * 60.00538 * 17 16 14 34 34 H 1.08992 * 109.47032 * 300.00494 * 17 16 14 35 35 H 1.07995 * 120.42934 * 0.04883 * 19 18 17 36 36 H 1.08007 * 120.42339 * 180.02562 * 22 20 19 37 37 H 1.08001 * 119.60855 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0068 -0.8422 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1299 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9579 -6.4587 -1.3302 17 6 3.9058 -7.5692 -1.4505 18 6 4.3131 -7.7280 -2.8927 19 6 5.4691 -7.1220 -3.3464 20 6 5.8347 -7.2741 -4.6762 21 35 7.4067 -6.4647 -5.3469 22 6 5.0183 -8.0336 -5.5025 23 6 3.8771 -8.6081 -4.9771 24 7 3.5618 -8.4432 -3.7070 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8895 30 1 1.3474 -5.1033 2.0511 31 1 0.0231 -4.4008 1.3310 32 1 2.6930 -5.9595 -2.1186 33 1 3.4346 -8.4883 -1.1024 34 1 4.7879 -7.3612 -0.8450 35 1 6.0804 -6.5378 -2.6745 36 1 5.2719 -8.1738 -6.5429 37 1 3.2367 -9.2010 -5.6134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580049550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -12.140680 kcal Electronic energy + Delta-G solvation = -20556.758805 eV Core-core repulsion = 17186.626372 eV Total energy + Delta-G solvation = -3370.132434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84536 -39.49708 -35.70410 -35.01044 -33.77412 -32.85688 -31.95768 -30.45887 -29.89161 -27.80567 -25.93428 -23.98415 -23.72706 -22.10982 -20.75255 -19.85256 -17.65718 -17.22807 -16.99807 -16.29141 -16.21530 -15.59604 -14.91370 -14.65153 -14.53382 -14.42547 -13.93696 -13.75528 -13.43105 -13.20250 -13.01689 -12.57148 -12.33936 -12.14322 -11.95230 -11.67777 -11.10002 -10.94814 -10.83760 -10.67608 -10.06093 -10.00323 -9.97226 -9.81734 -9.67995 -9.27579 -9.19017 -9.06233 -8.45134 -8.18631 -6.09429 -4.12479 0.40741 0.51805 0.95775 2.90855 2.95007 3.25495 3.33592 3.37318 3.48779 3.74252 4.11314 4.37599 4.38754 4.50872 4.76022 4.97466 5.05034 5.16827 5.18756 5.27009 5.36908 5.45234 5.56464 5.60871 5.75700 6.01740 6.27596 6.39325 6.51051 6.86529 7.39833 7.42647 7.51117 7.59999 7.66820 7.87756 7.91318 8.30201 8.41886 8.93742 9.52555 11.01514 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.002785 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.112644 B =10049.929798 C =12077.744420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.076 3.924 12 H 0.097 0.903 13 N -0.830 5.830 14 C 0.529 3.471 15 O -0.536 6.536 16 N -0.729 5.729 17 C 0.174 3.826 18 C 0.122 3.878 19 C -0.125 4.125 20 C -0.049 4.049 21 Br -0.028 7.028 22 C -0.142 4.142 23 C 0.111 3.889 24 N -0.456 5.456 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.346 0.654 31 H 0.355 0.645 32 H 0.403 0.597 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.219 -17.730 -14.089 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.039 4.039 12 H 0.115 0.885 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.411 6.411 16 N -0.383 5.383 17 C 0.049 3.951 18 C -0.017 4.017 19 C -0.148 4.148 20 C -0.136 4.136 21 Br 0.058 6.942 22 C -0.164 4.164 23 C -0.048 4.048 24 N -0.166 5.166 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.237 0.763 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.912 -18.875 -13.544 26.579 hybrid contribution 1.205 2.406 -0.599 2.757 sum 14.117 -16.470 -14.143 25.895 Atomic orbital electron populations 1.69959 1.06018 1.26671 1.50516 1.25013 0.94865 0.99311 0.95138 0.86536 0.80113 0.83711 0.77665 1.19753 1.20952 1.20929 1.21217 0.93053 0.90881 1.50997 0.92665 1.19111 0.93730 0.91116 0.97391 1.22384 0.99882 0.93949 1.01487 1.21467 0.94635 0.92123 0.95710 0.88516 1.58740 1.18446 1.55913 1.03143 1.20911 0.80939 0.84446 0.82115 1.90642 1.60114 1.53388 1.37001 1.45912 1.47098 1.34755 1.10522 1.20040 0.94194 0.92025 0.88792 1.21307 0.90870 0.93294 0.96240 1.22087 0.98197 0.99830 0.94646 1.22282 0.95332 1.00090 0.95940 1.96838 1.30649 1.80058 1.86635 1.22236 0.95433 0.97389 1.01303 1.22909 0.94175 0.96331 0.91348 1.67555 1.30813 1.13811 1.04406 0.92932 0.96334 0.96345 0.92598 0.92584 0.84121 0.82995 0.76304 0.89337 0.89676 0.83262 0.83501 0.81411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.66 4.78 -26.73 -0.13 -2.78 16 11 C 0.08 1.28 3.21 -68.86 -0.22 1.06 16 12 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 13 N -0.83 -14.30 8.94 -5.65 -0.05 -14.35 16 14 C 0.53 8.63 7.08 -10.99 -0.08 8.55 16 15 O -0.54 -10.25 16.25 5.56 0.09 -10.16 16 16 N -0.73 -9.42 5.55 -61.47 -0.34 -9.77 16 17 C 0.17 1.96 5.98 -5.19 -0.03 1.93 16 18 C 0.12 1.22 6.15 -82.60 -0.51 0.72 16 19 C -0.13 -1.13 9.51 -39.41 -0.37 -1.51 16 20 C -0.05 -0.41 6.27 -39.19 -0.25 -0.65 16 21 Br -0.03 -0.22 33.77 -68.01 -2.30 -2.52 16 22 C -0.14 -1.00 9.90 -39.42 -0.39 -1.39 16 23 C 0.11 0.84 11.18 -17.56 -0.20 0.65 16 24 N -0.46 -4.67 10.27 -9.49 -0.10 -4.77 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 27 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.35 5.99 8.58 -39.29 -0.34 5.66 16 31 H 0.35 6.12 7.55 -39.29 -0.30 5.82 16 32 H 0.40 4.71 8.46 -40.82 -0.35 4.37 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 37 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -31.89 342.72 -9.21 -41.10 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.68 Total: 10.38 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.72 Total: -6.05 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.25 Total: -54.09 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.30 Total: -2.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.89 -9.21 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580049550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.957 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds