Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00231 * 2 1 4 4 H 1.48497 * 109.46956 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46724 * 299.99544 * 3 2 1 6 6 H 1.48497 * 109.47220 * 59.99487 * 3 2 1 7 7 C 1.37877 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99876 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46622 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47317 * 54.99996 * 11 10 9 13 13 N 1.46904 * 109.47517 * 294.99732 * 11 10 9 14 14 C 1.50705 * 109.46722 * 175.00057 * 11 10 9 15 15 O 1.21280 * 119.99877 * 99.99960 * 14 11 10 16 16 N 1.34771 * 120.00058 * 279.99533 * 14 11 10 17 17 C 1.46502 * 120.00236 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.47203 * 180.02562 * 17 16 14 19 19 C 1.38177 * 119.61186 * 94.97780 * 18 17 16 20 20 C 1.38755 * 119.14465 * 180.02562 * 19 18 17 21 21 Br 1.89103 * 120.79659 * 179.97438 * 20 19 18 22 22 C 1.38780 * 118.39864 * 0.02562 * 20 19 18 23 23 C 1.38140 * 119.15201 * 0.02562 * 22 20 19 24 24 N 1.31874 * 119.61098 * 275.00273 * 18 17 16 25 25 H 0.97006 * 119.99798 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47116 * 59.99720 * 9 7 2 27 27 H 1.08995 * 109.47109 * 299.99833 * 9 7 2 28 28 H 1.08994 * 109.47027 * 59.99999 * 10 9 7 29 29 H 1.08997 * 109.47084 * 299.99392 * 10 9 7 30 30 H 1.00900 * 110.99812 * 300.01160 * 13 11 10 31 31 H 1.00902 * 110.99356 * 63.95307 * 13 11 10 32 32 H 0.97004 * 119.99807 * 0.02562 * 16 14 11 33 33 H 1.09000 * 109.46668 * 60.00538 * 17 16 14 34 34 H 1.08992 * 109.47032 * 300.00494 * 17 16 14 35 35 H 1.07995 * 120.42934 * 0.04883 * 19 18 17 36 36 H 1.08007 * 120.42339 * 180.02562 * 22 20 19 37 37 H 1.08001 * 119.60855 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4800 -4.9871 -0.0001 12 1 0.7882 -5.0068 -0.8422 13 7 0.7279 -5.1189 1.2549 14 6 2.4547 -6.1299 -0.1239 15 8 2.7861 -6.7537 0.8619 16 7 2.9579 -6.4587 -1.3302 17 6 3.9058 -7.5692 -1.4505 18 6 4.3131 -7.7280 -2.8927 19 6 5.4691 -7.1220 -3.3464 20 6 5.8347 -7.2741 -4.6762 21 35 7.4067 -6.4647 -5.3469 22 6 5.0183 -8.0336 -5.5025 23 6 3.8771 -8.6081 -4.9771 24 7 3.5618 -8.4432 -3.7070 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8895 30 1 1.3474 -5.1033 2.0511 31 1 0.0231 -4.4008 1.3310 32 1 2.6930 -5.9595 -2.1186 33 1 3.4346 -8.4883 -1.1024 34 1 4.7879 -7.3612 -0.8450 35 1 6.0804 -6.5378 -2.6745 36 1 5.2719 -8.1738 -6.5429 37 1 3.2367 -9.2010 -5.6134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580049550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -35.094276 kcal Electronic energy + Delta-G solvation = -20557.754148 eV Core-core repulsion = 17186.626372 eV Total energy + Delta-G solvation = -3371.127776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.57924 -40.73388 -37.17457 -36.16391 -34.83150 -34.44695 -32.77232 -31.67768 -31.08844 -28.96019 -27.42358 -25.37621 -24.57416 -22.97865 -22.34247 -21.20606 -19.00795 -18.20229 -17.93578 -17.79330 -17.17928 -16.61895 -16.35333 -16.06702 -15.84700 -15.55980 -15.08789 -14.82656 -14.58328 -14.36765 -14.18152 -13.95369 -13.67161 -13.40215 -12.99834 -12.94586 -12.68756 -12.60428 -12.49472 -11.80423 -11.73298 -11.45755 -11.28089 -10.88497 -10.66291 -10.56223 -10.45891 -10.25991 -10.18600 -9.63263 -8.21148 -6.31309 -0.24781 -0.11265 0.33351 1.38867 1.40569 1.52134 1.59275 2.02386 2.40207 2.65745 3.01340 3.12756 3.49543 3.75925 3.77427 3.78176 3.88988 4.12699 4.15572 4.25463 4.31805 4.54720 4.61270 4.66971 4.73757 4.80081 4.85146 5.09703 5.29366 5.41909 5.47660 5.66410 5.81405 6.07166 6.21799 6.44325 6.49427 6.77124 6.84560 7.16912 7.37909 8.89856 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.010394 B = 0.002785 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.112644 B =10049.929798 C =12077.744420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.107 0.893 13 N -0.830 5.830 14 C 0.532 3.468 15 O -0.566 6.566 16 N -0.714 5.714 17 C 0.176 3.824 18 C 0.111 3.889 19 C -0.130 4.130 20 C -0.059 4.059 21 Br -0.025 7.025 22 C -0.131 4.131 23 C 0.109 3.891 24 N -0.481 5.481 25 H 0.264 0.736 26 H 0.001 0.999 27 H 0.003 0.997 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.345 0.655 31 H 0.353 0.647 32 H 0.410 0.590 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.346 -17.967 -15.642 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.125 0.875 13 N -0.362 5.362 14 C 0.318 3.682 15 O -0.445 6.445 16 N -0.367 5.367 17 C 0.052 3.948 18 C -0.027 4.027 19 C -0.152 4.152 20 C -0.147 4.147 21 Br 0.061 6.939 22 C -0.152 4.152 23 C -0.049 4.049 24 N -0.190 5.190 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.168 0.832 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.172 0.828 36 H 0.191 0.809 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.057 -19.121 -15.127 28.143 hybrid contribution 0.859 2.426 -0.205 2.582 sum 14.916 -16.696 -15.332 27.135 Atomic orbital electron populations 1.70070 1.07495 1.27670 1.51458 1.25862 0.95718 1.02967 0.94791 0.85497 0.79070 0.79317 0.77766 1.18920 1.20337 1.20575 1.21653 0.93384 0.92419 1.50670 0.92633 1.18979 0.94063 0.92051 0.95720 1.22129 0.98771 0.93566 1.01531 1.21397 0.94726 0.91286 0.95977 0.87502 1.58756 1.18407 1.55679 1.03314 1.20670 0.80745 0.84095 0.82653 1.90631 1.61188 1.54451 1.38183 1.45797 1.46441 1.34763 1.09678 1.20060 0.93707 0.90779 0.90244 1.21023 0.91598 0.94535 0.95542 1.22123 0.97980 0.99860 0.95240 1.22432 0.95749 1.00526 0.95955 1.96845 1.30550 1.80092 1.86433 1.22565 0.94511 0.95799 1.02344 1.23427 0.94663 0.96144 0.90692 1.67520 1.31519 1.14353 1.05648 0.92759 0.98075 0.97865 0.93409 0.91578 0.84207 0.83204 0.75419 0.90259 0.89135 0.82824 0.80870 0.78515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 2 C 0.01 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.41 4.74 29.85 0.14 1.56 16 10 C -0.12 -4.61 4.78 30.60 0.15 -4.47 16 11 C 0.08 2.72 3.21 44.17 0.14 2.86 16 12 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 13 N -0.83 -28.62 8.94 -171.78 -1.54 -30.16 16 14 C 0.53 17.04 7.08 87.66 0.62 17.66 16 15 O -0.57 -21.53 16.25 -3.03 -0.05 -21.58 16 16 N -0.71 -17.86 5.55 -466.79 -2.59 -20.45 16 17 C 0.18 3.87 5.98 85.63 0.51 4.38 16 18 C 0.11 2.12 6.15 42.54 0.26 2.38 16 19 C -0.13 -2.19 9.51 22.38 0.21 -1.97 16 20 C -0.06 -0.88 6.27 22.52 0.14 -0.74 16 21 Br -0.02 -0.36 33.77 -20.37 -0.69 -1.04 16 22 C -0.13 -1.49 9.90 22.38 0.22 -1.27 16 23 C 0.11 1.39 11.18 84.66 0.95 2.34 16 24 N -0.48 -9.12 10.27 -183.93 -1.89 -11.01 16 25 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 26 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 27 H 0.00 0.16 6.87 -2.39 -0.02 0.14 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 30 H 0.34 12.03 8.58 -89.69 -0.77 11.26 16 31 H 0.35 12.33 7.55 -89.69 -0.68 11.65 16 32 H 0.41 9.11 8.46 -92.71 -0.78 8.33 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.89 8.04 -2.39 -0.02 1.87 16 35 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -67.42 342.72 -1.51 -68.93 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -1.11 Total: 29.97 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 4.04 Total: -5.94 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -5.73 Total: -115.56 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -0.69 Total: -1.04 kcal Total: -67.42 -1.51 -68.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580049550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.837 kcal (2) G-P(sol) polarization free energy of solvation -67.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds