Wall clock time and date at job start Sat Apr 11 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86795 * 119.99650 * 2 1 4 4 H 1.48501 * 109.47174 * 240.00480 * 3 2 1 5 5 H 1.48496 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47075 * 120.00595 * 3 2 1 7 7 C 1.39019 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99744 * 163.74129 * 7 2 1 9 9 N 1.36903 * 120.00183 * 343.73708 * 7 2 1 10 10 C 1.46503 * 119.99716 * 316.82239 * 9 7 2 11 11 C 1.53002 * 109.46761 * 269.02833 * 10 9 7 12 12 C 1.50705 * 109.47076 * 180.02562 * 11 10 9 13 13 O 1.20834 * 119.99706 * 0.02562 * 12 11 10 14 14 O 1.34222 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.34773 * 119.99738 * 136.82043 * 9 7 2 16 16 O 1.21625 * 119.99587 * 184.59781 * 15 9 7 17 17 C 1.47487 * 120.00592 * 4.59411 * 15 9 7 18 18 C 1.39810 * 120.08503 * 324.55876 * 17 15 9 19 19 C 1.38099 * 119.92346 * 180.22385 * 18 17 15 20 20 C 1.39562 * 119.99609 * 359.47635 * 19 18 17 21 21 C 1.38933 * 120.05991 * 0.54930 * 20 19 18 22 22 Cl 1.73599 * 119.89308 * 179.72324 * 21 20 19 23 23 C 1.37876 * 120.20281 * 359.70176 * 21 20 19 24 24 O 1.36390 * 108.58711 * 180.32969 * 20 19 18 25 25 C 1.44309 * 105.41630 * 342.30308 * 24 20 19 26 26 O 1.36544 * 131.41193 * 179.74491 * 19 18 17 27 27 H 0.96996 * 120.00510 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46959 * 29.02656 * 10 9 7 29 29 H 1.08993 * 109.46994 * 149.03226 * 10 9 7 30 30 H 1.09000 * 109.47240 * 299.99651 * 11 10 9 31 31 H 1.08993 * 109.47046 * 60.00425 * 11 10 9 32 32 H 0.96708 * 116.99911 * 180.02562 * 14 12 11 33 33 H 1.07997 * 120.03531 * 359.94969 * 18 17 15 34 34 H 1.07999 * 120.00643 * 180.02562 * 23 21 20 35 35 H 1.08999 * 111.00380 * 269.00719 * 25 24 20 36 36 H 1.08997 * 110.41240 * 146.10215 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1014 1.6965 -1.2126 5 1 1.2827 2.7464 0.0006 6 1 3.1015 1.6964 1.2124 7 6 2.0089 -1.2039 -0.0005 8 1 3.0566 -1.2224 -0.2624 9 7 1.3656 -2.3660 0.3310 10 6 0.4466 -2.3948 1.4716 11 6 1.2151 -2.7849 2.7358 12 6 0.2698 -2.8151 3.9091 13 8 -0.8989 -2.5521 3.7502 14 8 0.7257 -3.1352 5.1302 15 6 1.5776 -3.4834 -0.3921 16 8 0.9442 -4.4933 -0.1505 17 6 2.5776 -3.4818 -1.4762 18 6 2.7654 -2.3358 -2.2546 19 6 3.6994 -2.3395 -3.2719 20 6 4.4621 -3.4828 -3.5147 21 6 4.2748 -4.6216 -2.7412 22 17 5.2208 -6.0436 -3.0517 23 6 3.3401 -4.6255 -1.7276 24 8 5.3066 -3.2291 -4.5553 25 6 4.7626 -2.0674 -5.2163 26 8 4.0672 -1.3733 -4.1638 27 1 -0.4851 0.8400 0.0004 28 1 0.0032 -1.4081 1.6058 29 1 -0.3409 -3.1249 1.2853 30 1 1.6585 -3.7715 2.6016 31 1 2.0026 -2.0548 2.9221 32 1 0.0817 -3.1415 5.8516 33 1 2.1777 -1.4502 -2.0635 34 1 3.1974 -5.5124 -1.1280 35 1 4.0702 -2.3563 -6.0071 36 1 5.5647 -1.4484 -5.6184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:01 Heat of formation + Delta-G solvation = -174.657181 kcal Electronic energy + Delta-G solvation = -27396.564569 eV Core-core repulsion = 23065.686731 eV Total energy + Delta-G solvation = -4330.877838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.21542 -41.37041 -40.76004 -38.65229 -37.56388 -37.24973 -37.08456 -36.86368 -33.90957 -32.80064 -31.33769 -30.99694 -27.22572 -26.96954 -26.11230 -24.23272 -23.96461 -22.13516 -21.31914 -19.89180 -19.21629 -19.03531 -18.55401 -18.07976 -17.74585 -17.58803 -17.06947 -16.90195 -16.32399 -16.03980 -15.76584 -15.64504 -15.25758 -15.15227 -14.75909 -14.34991 -14.31150 -14.06620 -14.00088 -13.87031 -13.56455 -13.06059 -12.91224 -12.79636 -12.68251 -12.53724 -12.42198 -12.14573 -12.09063 -11.93948 -11.70638 -11.63515 -11.11672 -10.58217 -9.75989 -9.53834 -9.20717 -8.34178 -6.17159 -0.34268 -0.01009 0.89916 1.21665 1.44745 1.50261 1.57571 1.60740 1.79437 2.01785 2.32744 2.39439 2.57158 2.91199 3.05866 3.42519 3.79060 3.86425 3.99714 4.01586 4.12350 4.17243 4.19480 4.32129 4.50824 4.63874 4.72774 4.79319 4.94677 5.06084 5.13310 5.28950 5.37184 5.46673 5.61798 5.91417 5.94915 6.33180 7.02402 7.03205 7.40631 7.85220 8.67573 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.004277 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.502367 B = 6545.440044 C = 8451.838076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.016 3.984 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.358 4.358 8 H 0.103 0.897 9 N -0.431 5.431 10 C 0.133 3.867 11 C -0.118 4.118 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.510 3.490 16 O -0.617 6.617 17 C -0.090 4.090 18 C -0.050 4.050 19 C 0.025 3.975 20 C 0.054 3.946 21 C -0.033 4.033 22 Cl -0.042 7.042 23 C -0.055 4.055 24 O -0.305 6.305 25 C 0.202 3.798 26 O -0.316 6.316 27 H 0.275 0.725 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.427 0.573 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.193 -2.562 -3.481 11.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.485 4.485 8 H 0.120 0.880 9 N -0.147 5.147 10 C 0.009 3.991 11 C -0.157 4.157 12 C 0.339 3.661 13 O -0.441 6.441 14 O -0.321 6.321 15 C 0.301 3.699 16 O -0.505 6.505 17 C -0.093 4.093 18 C -0.069 4.069 19 C -0.020 4.020 20 C 0.008 3.992 21 C -0.060 4.060 22 Cl -0.013 7.013 23 C -0.075 4.075 24 O -0.221 6.221 25 C 0.092 3.908 26 O -0.233 6.233 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.289 0.711 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.127 0.873 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.924 -2.797 -3.812 10.993 hybrid contribution -0.432 0.832 0.328 0.994 sum 9.492 -1.965 -3.484 10.300 Atomic orbital electron populations 1.69983 1.07718 1.29166 1.44969 1.26160 0.95561 1.02503 0.94725 0.85349 0.78272 0.77274 0.79938 1.18593 1.21098 1.18635 1.19647 0.95051 0.83879 1.49898 0.87955 1.43354 1.39233 1.08455 1.23690 1.20963 0.91256 1.02975 0.83931 1.21628 0.98445 1.05747 0.89837 1.23352 0.87448 0.71016 0.84306 1.90714 1.20676 1.46878 1.85821 1.84502 1.47458 1.81378 1.18734 1.18431 0.84553 0.84486 0.82467 1.90645 1.52590 1.35220 1.72089 1.19409 0.98667 0.93567 0.97688 1.20975 0.94877 0.99805 0.91248 1.19508 0.99099 0.86870 0.96529 1.19573 0.92472 0.93882 0.93297 1.19455 0.99577 0.87233 0.99765 1.98355 1.70840 1.36899 1.95222 1.20866 0.92685 0.98502 0.95457 1.87411 1.46057 1.48191 1.40420 1.26325 0.96027 0.80430 0.88045 1.87403 1.72309 1.30200 1.33397 0.91515 0.89062 0.93857 0.87585 0.86167 0.71145 0.82372 0.82547 0.87322 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.65 11.57 21.68 0.25 -44.40 16 2 C 0.02 0.74 4.96 84.95 0.42 1.16 16 3 Si 0.97 36.79 29.58 68.60 2.03 38.82 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 5 H -0.29 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 7 C -0.36 -16.30 6.07 84.09 0.51 -15.79 16 8 H 0.10 4.47 6.48 -2.91 -0.02 4.45 16 9 N -0.43 -20.17 2.47 -639.19 -1.58 -21.75 16 10 C 0.13 6.11 4.30 86.38 0.37 6.48 16 11 C -0.12 -4.30 6.13 29.85 0.18 -4.11 16 12 C 0.50 16.85 8.33 71.24 0.59 17.44 16 13 O -0.55 -22.64 16.74 21.94 0.37 -22.27 16 14 O -0.51 -12.51 13.42 -51.34 -0.69 -13.20 16 15 C 0.51 23.75 7.35 86.68 0.64 24.39 16 16 O -0.62 -31.39 16.40 -4.11 -0.07 -31.46 16 17 C -0.09 -3.59 5.46 -20.10 -0.11 -3.70 16 18 C -0.05 -1.93 7.80 22.62 0.18 -1.75 16 19 C 0.02 0.83 7.13 22.56 0.16 0.99 16 20 C 0.05 1.69 6.94 22.76 0.16 1.84 16 21 C -0.03 -1.02 6.32 22.35 0.14 -0.88 16 22 Cl -0.04 -1.12 28.95 -2.72 -0.08 -1.19 16 23 C -0.06 -1.90 9.37 22.55 0.21 -1.69 16 24 O -0.30 -8.04 11.42 -74.77 -0.85 -8.89 16 25 C 0.20 4.01 8.89 113.37 1.01 5.02 16 26 O -0.32 -9.41 11.41 -76.57 -0.87 -10.28 16 27 H 0.28 13.30 8.31 -92.71 -0.77 12.53 16 28 H 0.09 4.61 5.72 -2.39 -0.01 4.59 16 29 H 0.04 2.19 7.35 -2.39 -0.02 2.17 16 30 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 32 H 0.43 6.29 9.10 -74.05 -0.67 5.62 16 33 H 0.16 6.81 5.65 -2.91 -0.02 6.79 16 34 H 0.16 5.09 8.00 -2.91 -0.02 5.07 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -64.33 335.51 3.48 -60.85 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.51 Total: 24.37 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 4.46 Total: 29.41 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -1.33 Total: -66.15 kcal Atomic # 8 Polarization: -83.99 SS G_CDS: -2.12 Total: -86.11 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.19 kcal Total: -64.33 3.48 -60.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.804 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds