Wall clock time and date at job start Sat Apr 11 2020 06:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47145 * 270.00150 * 3 2 1 5 5 H 1.48505 * 109.47019 * 29.99638 * 3 2 1 6 6 H 1.48498 * 109.47337 * 149.99792 * 3 2 1 7 7 C 1.38951 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99509 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00348 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00129 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47367 * 180.02562 * 12 10 9 14 14 C 1.34772 * 119.99897 * 179.97438 * 13 12 10 15 15 O 1.21361 * 120.00591 * 359.97438 * 14 13 12 16 16 C 1.49345 * 119.99580 * 179.97438 * 14 13 12 17 17 O 1.21371 * 120.00269 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99815 * 179.97438 * 16 14 13 19 19 C 1.39283 * 119.99797 * 185.39220 * 18 16 14 20 20 C 1.38170 * 123.52698 * 353.65565 * 19 18 16 21 21 C 1.33550 * 115.09837 * 180.26972 * 20 19 18 22 22 S 1.70560 * 111.22658 * 359.74335 * 21 20 19 23 23 C 1.37612 * 123.51705 * 173.45057 * 19 18 16 24 24 C 1.41501 * 125.49153 * 0.02787 * 23 19 18 25 25 O 1.21697 * 119.99972 * 359.71232 * 24 23 19 26 26 O 1.34974 * 119.99983 * 179.72012 * 24 23 19 27 27 H 0.96996 * 119.99884 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00337 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47543 * 59.99830 * 12 10 9 30 30 H 1.08999 * 109.46964 * 300.00148 * 12 10 9 31 31 H 0.97003 * 119.99961 * 359.97438 * 13 12 10 32 32 H 0.97005 * 119.99871 * 5.39180 * 18 16 14 33 33 H 1.07998 * 122.45205 * 0.02562 * 20 19 18 34 34 H 1.07999 * 124.39218 * 179.78448 * 21 20 19 35 35 H 0.96697 * 114.00199 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 7 6.0492 -3.7516 -0.0006 14 6 7.3743 -3.9978 -0.0012 15 8 8.1629 -3.0754 -0.0018 16 6 7.8721 -5.4059 -0.0013 17 8 7.0834 -6.3284 -0.0012 18 7 9.1972 -5.6521 -0.0024 19 6 9.6623 -6.9601 -0.1159 20 6 8.8362 -8.0676 -0.1039 21 6 9.4616 -9.2420 -0.2184 22 16 11.1485 -9.0324 -0.3574 23 6 10.9924 -7.2842 -0.2556 24 6 12.0626 -6.3597 -0.3034 25 8 11.8395 -5.1660 -0.2232 26 8 13.3307 -6.8017 -0.4381 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3632 -0.0004 29 1 5.9242 -1.8566 0.8899 30 1 5.9241 -1.8565 -0.8900 31 1 5.4189 -4.4890 -0.0006 32 1 9.8269 -4.9184 0.0757 33 1 7.7636 -7.9894 -0.0051 34 1 8.9636 -10.2004 -0.2231 35 1 13.9926 -6.0971 -0.4605 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:07 Heat of formation + Delta-G solvation = -140.104540 kcal Electronic energy + Delta-G solvation = -25756.106433 eV Core-core repulsion = 21461.063368 eV Total energy + Delta-G solvation = -4295.043065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61052 -40.53819 -39.46476 -38.40897 -37.77699 -36.39530 -35.09070 -34.34007 -33.81269 -31.86684 -30.62579 -28.69095 -26.46293 -24.80840 -23.61344 -23.09825 -20.89930 -19.93448 -19.89059 -19.29889 -18.99400 -18.30227 -17.99325 -16.92783 -16.48475 -16.31251 -16.07754 -15.75128 -15.56757 -15.31815 -15.09523 -14.98100 -14.42016 -14.11663 -14.02293 -13.77211 -13.39916 -13.22358 -13.04963 -12.60476 -12.26189 -12.25163 -12.01420 -11.83573 -11.35521 -11.28327 -11.23100 -11.04817 -10.68764 -10.10946 -9.81094 -9.75710 -9.36352 -9.25617 -8.86666 -8.43233 -8.36306 -6.45325 -3.98417 -0.25489 0.95645 1.09552 1.36871 1.85305 2.08755 2.50818 2.80301 2.95296 3.00262 3.03064 3.09247 3.35750 3.47285 3.99071 4.15701 4.40236 4.45024 4.58752 5.02939 5.08245 5.14243 5.43909 5.49161 5.57902 5.61878 5.62632 5.93079 6.07566 6.14128 6.69433 7.14279 7.36446 7.39316 7.45292 7.81228 7.96750 8.38445 8.76337 9.23610 9.55593 10.66557 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.002044 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.112296 B =13692.438381 C =14682.156751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.123 0.877 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.574 6.574 12 C 0.103 3.897 13 N -0.668 5.668 14 C 0.509 3.491 15 O -0.517 6.517 16 C 0.515 3.485 17 O -0.482 6.482 18 N -0.619 5.619 19 C 0.251 3.749 20 C -0.182 4.182 21 C -0.196 4.196 22 S 0.261 5.739 23 C -0.345 4.345 24 C 0.562 3.438 25 O -0.520 6.520 26 O -0.505 6.505 27 H 0.276 0.724 28 H 0.375 0.625 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.425 0.575 32 H 0.440 0.560 33 H 0.191 0.809 34 H 0.180 0.820 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.955 -15.272 -0.518 30.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.159 4.159 3 Si 0.706 3.294 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.220 3.780 11 O -0.459 6.459 12 C -0.024 4.024 13 N -0.324 5.324 14 C 0.287 3.713 15 O -0.394 6.394 16 C 0.297 3.703 17 O -0.354 6.354 18 N -0.268 5.268 19 C 0.136 3.864 20 C -0.214 4.214 21 C -0.335 4.335 22 S 0.528 5.472 23 C -0.467 4.467 24 C 0.409 3.591 25 O -0.412 6.412 26 O -0.315 6.315 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.266 0.734 32 H 0.284 0.716 33 H 0.208 0.792 34 H 0.197 0.803 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 26.125 -16.752 -0.656 31.042 hybrid contribution -0.285 2.809 0.183 2.829 sum 25.841 -13.944 -0.473 29.367 Atomic orbital electron populations 1.69617 1.05725 1.27909 1.47755 1.25082 0.95552 0.98217 0.97040 0.86664 0.79900 0.83716 0.79163 1.19349 1.19926 1.19211 1.19449 0.78824 0.96881 1.48799 0.85970 1.42095 1.07756 1.06023 1.65150 1.19491 0.87712 0.85079 0.85694 1.90580 1.68936 1.30769 1.55566 1.21185 0.94586 0.82488 1.04182 1.45453 1.06056 1.10637 1.70255 1.19470 0.83774 0.88277 0.79750 1.90815 1.55131 1.44762 1.48688 1.20561 0.82318 0.90689 0.76768 1.90623 1.55257 1.44853 1.44715 1.43277 1.08370 1.07897 1.67258 1.17257 0.90156 0.85524 0.93503 1.20828 1.04763 0.89110 1.06721 1.25534 1.00154 1.03553 1.04252 1.83161 1.01709 0.95568 1.66793 1.21906 0.94027 0.99682 1.31044 1.17842 0.82180 0.86352 0.72713 1.90891 1.84701 1.17145 1.48438 1.85016 1.17295 1.43407 1.85802 0.91299 0.79188 0.88775 0.88785 0.73385 0.71578 0.79214 0.80258 0.72798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.55 13.96 55.50 0.77 -23.78 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.58 27.74 -169.99 -4.71 13.86 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.11 6.52 56.52 0.37 -4.74 16 7 C -0.31 -8.42 10.16 -14.93 -0.15 -8.57 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.57 -12.92 5.09 -10.96 -0.06 -12.97 16 10 C 0.43 9.26 7.85 -10.99 -0.09 9.17 16 11 O -0.57 -14.33 15.24 5.54 0.08 -14.25 16 12 C 0.10 1.67 6.15 -5.19 -0.03 1.64 16 13 N -0.67 -10.52 5.52 -61.94 -0.34 -10.86 16 14 C 0.51 7.58 7.89 -11.64 -0.09 7.48 16 15 O -0.52 -8.45 16.48 5.49 0.09 -8.36 16 16 C 0.51 6.99 7.84 -11.63 -0.09 6.89 16 17 O -0.48 -6.85 13.25 5.48 0.07 -6.78 16 18 N -0.62 -7.70 5.31 -10.90 -0.06 -7.76 16 19 C 0.25 2.81 6.63 -84.73 -0.56 2.25 16 20 C -0.18 -1.81 9.09 -41.25 -0.37 -2.19 16 21 C -0.20 -1.36 10.89 29.09 0.32 -1.05 16 22 S 0.26 1.73 22.82 -107.50 -2.45 -0.72 16 23 C -0.35 -3.40 6.29 -38.57 -0.24 -3.64 16 24 C 0.56 5.55 8.08 31.97 0.26 5.81 16 25 O -0.52 -6.41 15.22 -19.42 -0.30 -6.71 16 26 O -0.50 -3.34 13.30 -41.24 -0.55 -3.88 16 27 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.37 7.37 5.76 -40.82 -0.24 7.13 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.43 7.04 6.91 -40.82 -0.28 6.75 16 32 H 0.44 5.67 5.74 -40.82 -0.23 5.44 16 33 H 0.19 2.11 5.21 -52.55 -0.27 1.84 16 34 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.41 0.99 8.98 45.56 0.41 1.40 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -33.63 333.66 -5.01 -38.64 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -1.44 Total: 19.63 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: -1.15 Total: 18.91 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.32 Total: -55.37 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.60 Total: -39.99 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.71 Total: 13.86 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.45 Total: -0.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.63 -5.01 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.465 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds