Wall clock time and date at job start Sat Apr 11 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47145 * 270.00150 * 3 2 1 5 5 H 1.48505 * 109.47019 * 29.99638 * 3 2 1 6 6 H 1.48498 * 109.47337 * 149.99792 * 3 2 1 7 7 C 1.38951 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99509 * 0.02562 * 7 2 1 9 9 N 1.37093 * 119.99776 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00348 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00129 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47367 * 180.02562 * 12 10 9 14 14 C 1.34772 * 119.99897 * 179.97438 * 13 12 10 15 15 O 1.21361 * 120.00591 * 359.97438 * 14 13 12 16 16 C 1.49345 * 119.99580 * 179.97438 * 14 13 12 17 17 O 1.21371 * 120.00269 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99815 * 179.97438 * 16 14 13 19 19 C 1.39283 * 119.99797 * 185.39220 * 18 16 14 20 20 C 1.38170 * 123.52698 * 353.65565 * 19 18 16 21 21 C 1.33550 * 115.09837 * 180.26972 * 20 19 18 22 22 S 1.70560 * 111.22658 * 359.74335 * 21 20 19 23 23 C 1.37612 * 123.51705 * 173.45057 * 19 18 16 24 24 C 1.41501 * 125.49153 * 0.02787 * 23 19 18 25 25 O 1.21697 * 119.99972 * 359.71232 * 24 23 19 26 26 O 1.34974 * 119.99983 * 179.72012 * 24 23 19 27 27 H 0.96996 * 119.99884 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00337 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47543 * 59.99830 * 12 10 9 30 30 H 1.08999 * 109.46964 * 300.00148 * 12 10 9 31 31 H 0.97003 * 119.99961 * 359.97438 * 13 12 10 32 32 H 0.97005 * 119.99871 * 5.39180 * 18 16 14 33 33 H 1.07998 * 122.45205 * 0.02562 * 20 19 18 34 34 H 1.07999 * 124.39218 * 179.78448 * 21 20 19 35 35 H 0.96697 * 114.00199 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 7 6.0492 -3.7516 -0.0006 14 6 7.3743 -3.9978 -0.0012 15 8 8.1629 -3.0754 -0.0018 16 6 7.8721 -5.4059 -0.0013 17 8 7.0834 -6.3284 -0.0012 18 7 9.1972 -5.6521 -0.0024 19 6 9.6623 -6.9601 -0.1159 20 6 8.8362 -8.0676 -0.1039 21 6 9.4616 -9.2420 -0.2184 22 16 11.1485 -9.0324 -0.3574 23 6 10.9924 -7.2842 -0.2556 24 6 12.0626 -6.3597 -0.3034 25 8 11.8395 -5.1660 -0.2232 26 8 13.3307 -6.8017 -0.4381 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3632 -0.0004 29 1 5.9242 -1.8566 0.8899 30 1 5.9241 -1.8565 -0.8900 31 1 5.4189 -4.4890 -0.0006 32 1 9.8269 -4.9184 0.0757 33 1 7.7636 -7.9894 -0.0051 34 1 8.9636 -10.2004 -0.2231 35 1 13.9926 -6.0971 -0.4605 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:06 Heat of formation + Delta-G solvation = -169.688653 kcal Electronic energy + Delta-G solvation = -25757.389297 eV Core-core repulsion = 21461.063368 eV Total energy + Delta-G solvation = -4296.325929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.55720 -41.39828 -40.71593 -39.93066 -38.66265 -37.07119 -36.47485 -35.82291 -35.06944 -33.85447 -31.33849 -30.10265 -27.57688 -26.30473 -24.75605 -23.79675 -21.97539 -21.55773 -20.80591 -20.72839 -19.96276 -19.62261 -18.75610 -18.10716 -17.53733 -17.32627 -17.24844 -16.91687 -16.66849 -16.48375 -16.38176 -16.22309 -15.65636 -15.33449 -15.07411 -14.92063 -14.44766 -14.36355 -14.29607 -14.08585 -13.73485 -13.70434 -12.97509 -12.82618 -12.68021 -12.44873 -12.08557 -12.03577 -12.00176 -11.81818 -11.59125 -10.90368 -10.70251 -10.51986 -10.32956 -10.02824 -9.11463 -8.45956 -6.08671 -0.99098 0.06744 0.30244 0.70432 1.08435 1.12859 1.31434 1.34472 1.44926 1.66019 1.76659 2.02540 2.19874 2.20646 2.27751 2.76474 3.09455 3.09957 3.73084 3.90829 3.92565 4.30698 4.33156 4.41605 4.51001 4.64544 4.85923 4.92289 5.28038 5.40076 5.46015 5.71144 5.86572 6.06419 6.34479 6.46463 6.62571 6.77018 6.79538 7.26568 7.75948 8.70365 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.002044 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.112296 B =13692.438381 C =14682.156751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.229 1.229 7 C -0.332 4.332 8 H 0.062 0.938 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.615 6.615 12 C 0.114 3.886 13 N -0.674 5.674 14 C 0.516 3.484 15 O -0.529 6.529 16 C 0.517 3.483 17 O -0.494 6.494 18 N -0.616 5.616 19 C 0.223 3.777 20 C -0.209 4.209 21 C -0.183 4.183 22 S 0.341 5.659 23 C -0.368 4.368 24 C 0.564 3.436 25 O -0.551 6.551 26 O -0.494 6.494 27 H 0.281 0.719 28 H 0.394 0.606 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.421 0.579 32 H 0.436 0.564 33 H 0.174 0.826 34 H 0.212 0.788 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.639 -15.386 -0.635 33.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.780 3.220 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.152 1.152 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.214 5.214 10 C 0.229 3.771 11 O -0.501 6.501 12 C -0.013 4.013 13 N -0.329 5.329 14 C 0.295 3.705 15 O -0.407 6.407 16 C 0.299 3.701 17 O -0.368 6.368 18 N -0.264 5.264 19 C 0.108 3.892 20 C -0.240 4.240 21 C -0.322 4.322 22 S 0.608 5.392 23 C -0.489 4.489 24 C 0.412 3.588 25 O -0.446 6.446 26 O -0.307 6.307 27 H 0.091 0.909 28 H 0.230 0.770 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.261 0.739 32 H 0.280 0.720 33 H 0.191 0.809 34 H 0.229 0.771 35 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 29.890 -16.901 -0.776 34.346 hybrid contribution -1.303 2.556 0.199 2.876 sum 28.587 -14.345 -0.577 31.989 Atomic orbital electron populations 1.69786 1.08117 1.29520 1.49062 1.26111 0.96457 1.02728 0.95625 0.85425 0.79666 0.76797 0.80099 1.18061 1.19970 1.15218 1.19021 0.80952 0.95272 1.50875 0.91944 1.41875 1.06112 1.07369 1.66024 1.20431 0.89941 0.83967 0.82740 1.90570 1.70706 1.32389 1.56410 1.21169 0.89996 0.83367 1.06770 1.45472 1.06404 1.10297 1.70748 1.19601 0.83133 0.88827 0.78919 1.90804 1.55270 1.45338 1.49251 1.20237 0.82819 0.89857 0.77209 1.90640 1.55633 1.44835 1.45729 1.43170 1.07595 1.08685 1.66980 1.17506 0.91111 0.85076 0.95513 1.20688 1.04152 0.89952 1.09240 1.25940 1.00909 1.03891 1.01413 1.82916 1.00340 0.92121 1.63813 1.22224 0.93592 1.02108 1.30946 1.17919 0.83019 0.85867 0.72022 1.90872 1.85287 1.18475 1.49965 1.84970 1.16571 1.44097 1.85038 0.90894 0.77003 0.86070 0.86055 0.73917 0.71952 0.80875 0.77087 0.70600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 13.96 21.66 0.30 -53.76 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.96 37.29 27.74 68.60 1.90 39.19 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 7 C -0.33 -18.65 10.16 84.04 0.85 -17.79 16 8 H 0.06 4.17 7.39 -2.91 -0.02 4.15 16 9 N -0.57 -25.66 5.09 -306.98 -1.56 -27.22 16 10 C 0.44 18.78 7.85 87.66 0.69 19.47 16 11 O -0.61 -31.74 15.24 -3.08 -0.05 -31.79 16 12 C 0.11 3.47 6.15 85.63 0.53 3.99 16 13 N -0.67 -20.82 5.52 -468.25 -2.59 -23.41 16 14 C 0.52 15.08 7.89 87.24 0.69 15.77 16 15 O -0.53 -16.67 16.48 -3.28 -0.05 -16.72 16 16 C 0.52 14.20 7.84 87.24 0.68 14.88 16 17 O -0.49 -14.44 13.25 -3.31 -0.04 -14.48 16 18 N -0.62 -15.45 5.31 -306.75 -1.63 -17.08 16 19 C 0.22 4.89 6.63 37.79 0.25 5.14 16 20 C -0.21 -4.01 9.09 21.19 0.19 -3.82 16 21 C -0.18 -2.07 10.89 66.76 0.73 -1.34 16 22 S 0.34 3.45 22.82 -56.49 -1.29 2.16 16 23 C -0.37 -6.70 6.29 22.93 0.14 -6.56 16 24 C 0.56 10.40 8.08 68.62 0.55 10.96 16 25 O -0.55 -13.38 15.22 19.19 0.29 -13.08 16 26 O -0.49 -5.39 13.30 -58.91 -0.78 -6.17 16 27 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.39 14.46 5.76 -92.71 -0.53 13.93 16 29 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.42 14.13 6.91 -92.71 -0.64 13.49 16 32 H 0.44 11.38 5.74 -92.70 -0.53 10.85 16 33 H 0.17 3.93 5.21 -3.97 -0.02 3.91 16 34 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.43 1.09 8.98 -74.06 -0.67 0.42 16 Total: -1.00 -78.16 333.66 -0.91 -79.06 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -1.18 Total: 42.61 kcal Atomic # 6 Polarization: 34.91 SS G_CDS: 5.78 Total: 40.69 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -5.48 Total: -121.47 kcal Atomic # 8 Polarization: -81.62 SS G_CDS: -0.64 Total: -82.25 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.90 Total: 39.19 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.29 Total: 2.16 kcal Total: -78.16 -0.91 -79.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.624 kcal (2) G-P(sol) polarization free energy of solvation -78.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds