Wall clock time and date at job start Sat Apr 11 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48499 * 109.47267 * 270.00560 * 3 2 1 5 5 H 1.48497 * 109.46801 * 30.00506 * 3 2 1 6 6 H 1.48498 * 109.47109 * 150.00110 * 3 2 1 7 7 C 1.38798 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00305 * 359.97438 * 7 2 1 9 9 S 1.76202 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99706 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46956 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99904 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99893 * 179.97438 * 11 10 9 14 14 C 1.39930 * 119.99643 * 185.27387 * 13 11 10 15 15 C 1.38959 * 120.02800 * 213.30968 * 14 13 11 16 16 C 1.38161 * 120.09168 * 180.02562 * 15 14 13 17 17 C 1.38150 * 120.14453 * 359.70705 * 16 15 14 18 18 C 1.39004 * 120.06302 * 0.54550 * 17 16 15 19 19 S 1.76198 * 120.04685 * 179.74835 * 18 17 16 20 20 C 1.81403 * 102.99956 * 359.72522 * 19 18 17 21 21 C 1.53002 * 109.47077 * 179.97438 * 20 19 18 22 22 C 1.50697 * 109.47201 * 179.97438 * 21 20 19 23 23 O 1.20829 * 119.99856 * 0.02562 * 22 21 20 24 24 O 1.34227 * 119.99924 * 179.97438 * 22 21 20 25 25 C 1.38692 * 120.02882 * 33.33334 * 14 13 11 26 26 H 0.96999 * 120.00385 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47224 * 60.00117 * 10 9 7 28 28 H 1.09003 * 109.47264 * 299.99509 * 10 9 7 29 29 H 0.96998 * 119.99966 * 5.26952 * 13 11 10 30 30 H 1.08007 * 119.95759 * 0.02562 * 15 14 13 31 31 H 1.07994 * 119.92758 * 179.97438 * 16 15 14 32 32 H 1.08004 * 119.96731 * 180.29442 * 17 16 15 33 33 H 1.09001 * 109.47258 * 299.99810 * 20 19 18 34 34 H 1.08998 * 109.46759 * 60.00045 * 20 19 18 35 35 H 1.09001 * 109.47104 * 300.00127 * 21 20 19 36 36 H 1.09007 * 109.46776 * 59.99995 * 21 20 19 37 37 H 0.96705 * 116.99549 * 180.02562 * 24 22 21 38 38 H 1.07995 * 120.08141 * 0.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5731 -3.2325 -0.0026 12 8 6.3441 -2.2961 -0.0024 13 7 6.0457 -4.4946 -0.0030 14 6 7.4212 -4.7267 0.1083 15 6 7.9982 -5.8114 -0.5408 16 6 9.3560 -6.0421 -0.4314 17 6 10.1458 -5.1921 0.3184 18 6 9.5744 -4.1081 0.9746 19 16 10.5811 -3.0281 1.9361 20 6 12.2366 -3.7485 1.7597 21 6 13.2441 -2.9110 2.5499 22 6 14.6193 -3.5098 2.4039 23 8 14.7774 -4.5041 1.7359 24 8 15.6686 -2.9379 3.0151 25 6 8.2096 -3.8744 0.8669 26 1 -0.4850 0.8400 0.0004 27 1 3.6433 -3.4309 -0.8927 28 1 3.6441 -3.4321 0.8874 29 1 5.4324 -5.2421 -0.0804 30 1 7.3843 -6.4752 -1.1317 31 1 9.8016 -6.8861 -0.9366 32 1 11.2077 -5.3723 0.3981 33 1 12.2316 -4.7688 2.1433 34 1 12.5186 -3.7574 0.7069 35 1 13.2490 -1.8908 2.1660 36 1 12.9622 -2.9016 3.6029 37 1 16.5309 -3.3580 2.8917 38 1 7.7634 -3.0311 1.3729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:09 Heat of formation + Delta-G solvation = -104.317775 kcal Electronic energy + Delta-G solvation = -22801.873065 eV Core-core repulsion = 19054.675045 eV Total energy + Delta-G solvation = -3747.198020 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.76908 -40.42900 -38.37641 -36.76506 -34.78482 -33.73468 -32.47981 -31.18606 -30.77640 -28.54815 -26.16543 -25.65553 -23.35776 -22.77654 -21.55438 -20.47622 -18.76313 -18.48415 -17.76985 -17.39154 -16.84561 -16.67094 -16.38791 -15.92246 -15.55426 -15.01831 -14.87123 -14.72997 -14.46128 -14.09642 -13.73202 -13.53944 -13.30508 -13.22405 -12.93535 -12.83625 -12.37552 -12.20532 -12.03794 -11.96602 -11.71805 -11.31009 -11.13909 -11.04184 -10.74387 -10.64552 -10.43441 -9.90007 -9.78413 -9.64747 -9.04186 -8.57429 -8.30876 -7.61964 -6.98088 -6.32659 -4.05638 0.98084 1.03632 1.19795 1.63939 2.08002 2.60630 2.63265 2.72876 3.18626 3.30895 3.47597 3.54877 3.58987 3.97177 4.27604 4.29414 4.58765 4.67975 4.70101 4.86335 4.94579 4.97911 5.00631 5.06370 5.09833 5.24535 5.33554 5.35220 5.63400 5.66569 5.90233 5.93895 6.04809 6.17476 6.18185 6.27929 6.83919 7.31625 7.34278 7.90112 8.22309 8.37588 9.13118 10.76411 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.002073 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.511108 B =13503.765399 C =14926.909437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.137 6.137 10 C -0.125 4.125 11 C 0.530 3.470 12 O -0.494 6.494 13 N -0.679 5.679 14 C 0.177 3.823 15 C -0.153 4.153 16 C -0.081 4.081 17 C -0.155 4.155 18 C -0.066 4.066 19 S -0.093 6.093 20 C -0.108 4.108 21 C -0.099 4.099 22 C 0.487 3.513 23 O -0.514 6.514 24 O -0.515 6.515 25 C -0.102 4.102 26 H 0.271 0.729 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.413 0.587 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.413 0.587 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.992 -12.655 4.265 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.089 5.911 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.366 6.366 13 N -0.326 5.326 14 C 0.080 3.920 15 C -0.175 4.175 16 C -0.101 4.101 17 C -0.179 4.179 18 C -0.179 4.179 19 S 0.151 5.849 20 C -0.256 4.256 21 C -0.138 4.138 22 C 0.327 3.673 23 O -0.402 6.402 24 O -0.327 6.327 25 C -0.128 4.128 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.249 0.751 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.272 0.728 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 27.452 -9.998 4.831 29.613 hybrid contribution -0.295 -2.163 -0.992 2.398 sum 27.157 -12.161 3.839 30.002 Atomic orbital electron populations 1.69931 1.05904 1.27837 1.47808 1.24707 0.94461 0.98976 0.93111 0.86742 0.81896 0.83288 0.79978 1.19170 1.19867 1.15898 1.22294 0.88087 0.97602 1.59096 0.89291 1.84833 1.09536 0.99281 1.97455 1.23294 0.92891 1.05095 1.06265 1.20551 0.91122 0.81801 0.74846 1.90736 1.58513 1.41875 1.45522 1.43668 1.05483 1.09349 1.74087 1.17593 0.83717 0.95559 0.95131 1.20942 0.95512 0.99494 1.01596 1.20789 0.92892 0.98676 0.97730 1.21101 0.99948 0.95846 1.01022 1.21441 0.96490 0.98437 1.01543 1.85608 1.00111 1.36917 1.62216 1.23447 0.94450 1.02850 1.04866 1.20974 0.86940 1.01471 1.04428 1.23231 0.87159 0.81549 0.75347 1.90756 1.85907 1.25454 1.38123 1.84525 1.20250 1.58280 1.69631 1.20753 0.91448 1.01132 0.99422 0.91876 0.88073 0.87913 0.75105 0.85338 0.85348 0.85813 0.88309 0.88273 0.86226 0.86292 0.72752 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 13.97 55.49 0.78 -25.39 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.49 27.74 -169.99 -4.71 16.78 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.23 -5.88 6.74 56.52 0.38 -5.50 16 7 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 10 C -0.12 -2.29 6.16 36.01 0.22 -2.07 16 11 C 0.53 9.05 7.58 -10.98 -0.08 8.97 16 12 O -0.49 -10.25 13.55 5.55 0.08 -10.17 16 13 N -0.68 -8.69 5.34 -9.88 -0.05 -8.74 16 14 C 0.18 2.31 6.28 -83.73 -0.53 1.78 16 15 C -0.15 -1.58 9.96 -39.34 -0.39 -1.97 16 16 C -0.08 -0.77 10.03 -39.64 -0.40 -1.17 16 17 C -0.15 -1.62 9.36 -39.33 -0.37 -1.99 16 18 C -0.07 -0.82 6.11 -39.06 -0.24 -1.05 16 19 S -0.09 -0.98 21.92 -107.50 -2.36 -3.34 16 20 C -0.11 -0.80 3.62 37.16 0.13 -0.67 16 21 C -0.10 -0.55 5.82 -27.88 -0.16 -0.71 16 22 C 0.49 3.20 8.33 36.00 0.30 3.50 16 23 O -0.51 -5.02 16.74 -18.75 -0.31 -5.33 16 24 O -0.51 -2.37 13.42 -39.25 -0.53 -2.90 16 25 C -0.10 -1.47 8.40 -39.18 -0.33 -1.80 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 27 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 29 H 0.41 3.77 8.82 -40.82 -0.36 3.41 16 30 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.12 1.08 5.87 -52.48 -0.31 0.77 16 33 H 0.10 0.73 7.72 -51.92 -0.40 0.33 16 34 H 0.10 0.77 7.69 -51.93 -0.40 0.37 16 35 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.41 0.28 9.10 45.56 0.41 0.70 16 38 H 0.14 2.40 6.41 -52.49 -0.34 2.07 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -36.31 360.00 -8.81 -45.12 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.50 Total: 2.87 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.63 Total: -8.95 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.72 Total: -34.13 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.77 Total: -18.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -4.35 Total: -8.71 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.31 -8.81 -45.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.196 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds