Wall clock time and date at job start Sat Apr 11 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48493 * 109.46980 * 270.00472 * 3 2 1 5 5 H 1.48508 * 109.46790 * 30.00274 * 3 2 1 6 6 H 1.48494 * 109.46911 * 149.99662 * 3 2 1 7 7 C 1.38952 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99427 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99712 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00171 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99930 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.47042 * 180.02562 * 12 10 9 14 14 C 1.35913 * 116.99641 * 180.02562 * 13 12 10 15 15 C 1.38676 * 120.10057 * 89.99844 * 14 13 12 16 16 Cl 1.73598 * 119.96784 * 0.03328 * 15 14 13 17 17 C 1.38260 * 120.06413 * 180.02562 * 15 14 13 18 18 C 1.38575 * 120.26052 * 359.97182 * 17 15 14 19 19 F 1.35102 * 119.90113 * 179.75222 * 18 17 15 20 20 C 1.38197 * 120.19269 * 0.02562 * 18 17 15 21 21 C 1.39299 * 119.92951 * 359.97438 * 20 18 17 22 22 C 1.48399 * 120.12729 * 180.02562 * 21 20 18 23 23 N 1.34071 * 126.67760 * 179.64451 * 22 21 20 24 24 N 1.28984 * 107.26348 * 179.83976 * 23 22 21 25 25 N 1.28725 * 108.94897 * 0.43041 * 24 23 22 26 26 H 0.97007 * 125.33457 * 179.72961 * 25 24 23 27 27 N 1.28869 * 109.32658 * 359.72604 * 25 24 23 28 28 H 0.97005 * 119.99614 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00494 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47383 * 59.99599 * 12 10 9 31 31 H 1.09005 * 109.46636 * 299.99738 * 12 10 9 32 32 H 1.07996 * 119.87267 * 179.97438 * 17 15 14 33 33 H 1.07996 * 120.03640 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8629 -0.0011 13 8 2.1721 -5.9492 -0.0004 14 6 1.6525 -7.2050 -0.0013 15 6 1.3879 -7.8473 -1.2016 16 17 1.7215 -7.0468 -2.7054 17 6 0.8588 -9.1247 -1.2017 18 6 0.5909 -9.7696 -0.0048 19 9 0.0692 -11.0159 -0.0133 20 6 0.8505 -9.1396 1.1975 21 6 1.3835 -7.8527 1.2069 22 6 1.6645 -7.1722 2.4954 23 7 2.1798 -5.9451 2.6573 24 7 2.2620 -5.7288 3.9263 25 7 1.8310 -6.7657 4.5558 26 1 1.7909 -6.8599 5.5204 27 7 1.4613 -7.6589 3.7036 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6171 -4.9205 -0.8913 31 1 0.6166 -4.9208 0.8887 32 1 0.6536 -9.6218 -2.1382 33 1 0.6403 -9.6444 2.1288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606349415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:12 Heat of formation + Delta-G solvation = 41.277323 kcal Electronic energy + Delta-G solvation = -26536.678138 eV Core-core repulsion = 22156.289120 eV Total energy + Delta-G solvation = -4380.389018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.26564 -44.49022 -40.20678 -38.21775 -36.84202 -36.65236 -34.39625 -33.83882 -33.68611 -31.22376 -30.92511 -30.07958 -27.66968 -25.21556 -24.65349 -24.36239 -22.64130 -22.01158 -19.53565 -19.41900 -18.16036 -17.93080 -17.65272 -17.24774 -17.16259 -16.06823 -15.77850 -15.52788 -15.08921 -14.91746 -14.72299 -14.33195 -14.02483 -13.83944 -13.69485 -13.47859 -12.83320 -12.54441 -12.17611 -12.07702 -11.87423 -11.79529 -11.49920 -11.31088 -11.15172 -11.07786 -11.01437 -10.80407 -10.35285 -10.17819 -9.82058 -9.44986 -9.14620 -8.74682 -8.31102 -7.92507 -6.37217 -3.77704 0.17731 0.53664 1.12958 1.79214 2.09860 2.17620 2.94701 3.21938 3.30111 3.35669 3.37648 3.56631 3.75089 3.93150 4.23994 4.26865 4.43852 4.59504 4.79753 4.85250 5.17731 5.27015 5.28197 5.37569 5.44849 5.53328 5.63346 5.69380 5.89598 6.13048 6.25636 6.30458 7.44276 7.60364 8.09323 8.14869 8.65367 9.22321 9.55949 10.07949 10.80813 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.003640 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.010047 B = 7691.414669 C = 9364.055032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.294 4.294 8 H 0.105 0.895 9 N -0.562 5.562 10 C 0.455 3.545 11 O -0.564 6.564 12 C 0.070 3.930 13 O -0.279 6.279 14 C 0.145 3.855 15 C -0.036 4.036 16 Cl -0.025 7.025 17 C -0.115 4.115 18 C 0.101 3.899 19 F -0.128 7.128 20 C -0.101 4.101 21 C 0.003 3.997 22 C 0.207 3.793 23 N -0.220 5.220 24 N -0.041 5.041 25 N -0.231 5.231 26 H 0.474 0.526 27 N -0.293 5.293 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.156 0.844 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 -20.244 3.947 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.423 4.423 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.240 3.760 11 O -0.446 6.446 12 C -0.008 4.008 13 O -0.193 6.193 14 C 0.097 3.903 15 C -0.063 4.063 16 Cl 0.004 6.996 17 C -0.136 4.136 18 C 0.081 3.919 19 F -0.107 7.107 20 C -0.122 4.122 21 C -0.001 4.001 22 C -0.072 4.072 23 N -0.093 5.093 24 N -0.037 5.037 25 N -0.076 5.076 26 H 0.329 0.671 27 N -0.145 5.145 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.173 0.827 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.359 -19.464 4.205 20.052 hybrid contribution -0.716 0.148 0.292 0.788 sum -3.075 -19.316 4.498 20.069 Atomic orbital electron populations 1.69620 1.05917 1.28081 1.50879 1.25240 0.95634 0.99612 0.97422 0.85852 0.79274 0.80777 0.78372 1.20421 1.20993 1.19345 1.19696 0.93398 0.81841 1.47371 0.87753 1.41666 1.09107 1.04083 1.65149 1.19164 0.88284 0.83748 0.84826 1.90564 1.13364 1.86646 1.54007 1.22410 0.91239 0.86130 1.00987 1.86202 1.30657 1.08912 1.93548 1.18456 0.94228 0.88456 0.89207 1.20951 1.02579 0.94347 0.88459 1.98433 1.93458 1.79044 1.28620 1.21045 1.00216 0.93522 0.98785 1.17054 1.00266 0.81369 0.93162 1.91548 1.84138 1.37706 1.97260 1.21043 0.99060 0.93592 0.98472 1.17143 1.02168 0.93608 0.87192 1.23149 1.01357 0.91196 0.91530 1.76615 1.14234 1.13088 1.05350 1.79171 1.13562 1.10625 1.00317 1.47800 1.39622 1.07852 1.12301 0.67140 1.74806 1.21509 1.18759 0.99460 0.91935 0.77517 0.91391 0.91567 0.82677 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.29 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 9 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C 0.46 11.26 7.86 -10.98 -0.09 11.17 16 11 O -0.56 -16.14 16.08 -14.36 -0.23 -16.37 16 12 C 0.07 1.34 5.95 36.01 0.21 1.56 16 13 O -0.28 -5.26 7.61 -39.38 -0.30 -5.56 16 14 C 0.15 2.16 5.72 -38.87 -0.22 1.94 16 15 C -0.04 -0.45 6.33 -39.41 -0.25 -0.70 16 16 Cl -0.02 -0.33 28.49 -51.86 -1.48 -1.81 16 17 C -0.12 -1.12 9.79 -39.45 -0.39 -1.51 16 18 C 0.10 0.98 7.29 -39.47 -0.29 0.69 16 19 F -0.13 -1.20 17.26 2.25 0.04 -1.16 16 20 C -0.10 -1.03 9.67 -39.20 -0.38 -1.40 16 21 C 0.00 0.04 5.89 -104.77 -0.62 -0.58 16 22 C 0.21 3.00 7.90 -156.30 -1.24 1.77 16 23 N -0.22 -3.85 10.05 32.15 0.32 -3.53 16 24 N -0.04 -0.62 13.47 60.35 0.81 0.20 16 25 N -0.23 -2.35 7.90 60.35 0.48 -1.88 16 26 H 0.47 2.30 8.96 -340.36 -3.05 -0.75 16 27 N -0.29 -3.42 12.08 32.16 0.39 -3.04 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.19 7.61 -51.93 -0.40 0.79 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.16 1.30 7.88 -52.49 -0.41 0.89 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -34.63 327.75 -7.41 -42.05 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.54 Total: 3.49 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -3.49 Total: 5.00 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 2.67 Total: -46.81 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.53 Total: -21.92 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.48 Total: -1.81 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.63 -7.41 -42.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.327 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds