Wall clock time and date at job start Sat Apr 11 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 120.00357 * 2 1 4 4 H 1.48493 * 109.46980 * 270.00472 * 3 2 1 5 5 H 1.48508 * 109.46790 * 30.00274 * 3 2 1 6 6 H 1.48494 * 109.46911 * 149.99662 * 3 2 1 7 7 C 1.38952 * 119.99397 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99427 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99712 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00171 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99930 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.47042 * 180.02562 * 12 10 9 14 14 C 1.35913 * 116.99641 * 180.02562 * 13 12 10 15 15 C 1.38676 * 120.10057 * 89.99844 * 14 13 12 16 16 Cl 1.73598 * 119.96784 * 0.03328 * 15 14 13 17 17 C 1.38260 * 120.06413 * 180.02562 * 15 14 13 18 18 C 1.38575 * 120.26052 * 359.97182 * 17 15 14 19 19 F 1.35102 * 119.90113 * 179.75222 * 18 17 15 20 20 C 1.38197 * 120.19269 * 0.02562 * 18 17 15 21 21 C 1.39299 * 119.92951 * 359.97438 * 20 18 17 22 22 C 1.48399 * 120.12729 * 180.02562 * 21 20 18 23 23 N 1.34071 * 126.67760 * 179.64451 * 22 21 20 24 24 N 1.28984 * 107.26348 * 179.83976 * 23 22 21 25 25 N 1.28725 * 108.94897 * 0.43041 * 24 23 22 26 26 H 0.97007 * 125.33457 * 179.72961 * 25 24 23 27 27 N 1.28869 * 109.32658 * 359.72604 * 25 24 23 28 28 H 0.97005 * 119.99614 * 359.97438 * 1 2 3 29 29 H 0.96998 * 120.00494 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47383 * 59.99599 * 12 10 9 31 31 H 1.09005 * 109.46636 * 299.99738 * 12 10 9 32 32 H 1.07996 * 119.87267 * 179.97438 * 17 15 14 33 33 H 1.07996 * 120.03640 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2435 -4.8629 -0.0011 13 8 2.1721 -5.9492 -0.0004 14 6 1.6525 -7.2050 -0.0013 15 6 1.3879 -7.8473 -1.2016 16 17 1.7215 -7.0468 -2.7054 17 6 0.8588 -9.1247 -1.2017 18 6 0.5909 -9.7696 -0.0048 19 9 0.0692 -11.0159 -0.0133 20 6 0.8505 -9.1396 1.1975 21 6 1.3835 -7.8527 1.2069 22 6 1.6645 -7.1722 2.4954 23 7 2.1798 -5.9451 2.6573 24 7 2.2620 -5.7288 3.9263 25 7 1.8310 -6.7657 4.5558 26 1 1.7909 -6.8599 5.5204 27 7 1.4613 -7.6589 3.7036 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0005 30 1 0.6171 -4.9205 -0.8913 31 1 0.6166 -4.9208 0.8887 32 1 0.6536 -9.6218 -2.1382 33 1 0.6403 -9.6444 2.1288 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:11 Heat of formation + Delta-G solvation = 16.895498 kcal Electronic energy + Delta-G solvation = -26537.735413 eV Core-core repulsion = 22156.289120 eV Total energy + Delta-G solvation = -4381.446293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.05478 -45.51969 -41.31957 -39.98519 -38.19372 -37.65162 -35.92722 -35.43622 -34.69065 -33.30534 -31.85062 -31.21195 -29.21294 -26.48304 -26.10382 -25.63240 -23.62634 -22.99295 -21.39841 -20.44375 -19.99994 -19.16429 -18.73241 -18.24400 -18.16946 -17.66337 -16.87787 -16.66946 -16.47196 -16.34285 -15.98181 -15.72138 -15.43134 -15.23390 -14.91099 -14.56302 -14.24820 -14.04058 -13.51200 -13.42666 -13.25034 -12.96988 -12.92137 -12.79464 -12.40721 -12.38144 -12.18446 -12.14114 -12.10516 -11.74763 -11.51530 -11.10661 -10.34308 -10.04999 -10.01552 -9.72044 -8.45280 -5.94104 -0.74824 -0.39484 0.10345 0.83228 1.07237 1.38083 1.39574 1.43198 1.56079 1.88900 2.01366 2.27753 2.41320 2.48526 2.82087 3.20291 3.30725 3.34086 3.61736 3.71363 3.88738 3.93529 4.08751 4.27494 4.29010 4.35823 4.41180 4.56803 4.70364 4.86490 5.31808 5.43162 5.58776 5.95056 6.22970 6.60537 7.10001 7.12877 7.51761 8.07983 8.72458 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.003640 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.010047 B = 7691.414669 C = 9364.055032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.080 0.920 9 N -0.567 5.567 10 C 0.452 3.548 11 O -0.609 6.609 12 C 0.088 3.912 13 O -0.302 6.302 14 C 0.115 3.885 15 C -0.038 4.038 16 Cl -0.038 7.038 17 C -0.098 4.098 18 C 0.118 3.882 19 F -0.119 7.119 20 C -0.085 4.085 21 C -0.004 4.004 22 C 0.197 3.803 23 N -0.273 5.273 24 N -0.066 5.066 25 N -0.195 5.195 26 H 0.495 0.505 27 N -0.273 5.273 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.185 0.815 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 -21.971 4.339 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.098 0.902 9 N -0.206 5.206 10 C 0.239 3.761 11 O -0.494 6.494 12 C 0.011 3.989 13 O -0.218 6.218 14 C 0.067 3.933 15 C -0.066 4.066 16 Cl -0.008 7.008 17 C -0.118 4.118 18 C 0.098 3.902 19 F -0.098 7.098 20 C -0.106 4.106 21 C -0.009 4.009 22 C -0.083 4.083 23 N -0.144 5.144 24 N -0.061 5.061 25 N -0.046 5.046 26 H 0.355 0.645 27 N -0.127 5.127 28 H 0.088 0.912 29 H 0.230 0.770 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.202 0.798 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.680 -21.204 4.613 22.010 hybrid contribution -0.374 0.482 0.262 0.664 sum -4.054 -20.723 4.875 21.671 Atomic orbital electron populations 1.69678 1.06806 1.29335 1.50241 1.26024 0.96552 1.02257 0.96148 0.84927 0.77898 0.76781 0.78734 1.19487 1.19408 1.19816 1.19654 0.92729 0.83570 1.49998 0.90219 1.41707 1.09237 1.04213 1.65416 1.20058 0.88041 0.85214 0.82780 1.90519 1.15605 1.87646 1.55677 1.22042 0.90432 0.84087 1.02360 1.86168 1.31382 1.10268 1.93953 1.18676 0.96822 0.87120 0.90718 1.20935 1.03264 0.95170 0.87232 1.98429 1.93656 1.79551 1.29192 1.21266 0.98207 0.92138 1.00189 1.16970 0.99103 0.81314 0.92801 1.91586 1.83841 1.37147 1.97195 1.21192 0.97403 0.92230 0.99730 1.17180 1.02952 0.94544 0.86179 1.23405 1.01497 0.90705 0.92674 1.76586 1.16278 1.15093 1.06490 1.79093 1.14918 1.11995 1.00135 1.47863 1.37019 1.06466 1.13274 0.64506 1.74778 1.20854 1.18331 0.98731 0.91236 0.76971 0.89258 0.90510 0.79819 0.80511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.57 -30.43 5.29 -306.98 -1.62 -32.06 16 10 C 0.45 23.28 7.86 87.66 0.69 23.97 16 11 O -0.61 -36.65 16.08 15.97 0.26 -36.40 16 12 C 0.09 3.47 5.95 71.24 0.42 3.89 16 13 O -0.30 -11.67 7.61 -73.54 -0.56 -12.23 16 14 C 0.11 3.35 5.72 22.73 0.13 3.48 16 15 C -0.04 -0.91 6.33 22.38 0.14 -0.77 16 16 Cl -0.04 -0.98 28.49 -2.72 -0.08 -1.06 16 17 C -0.10 -1.62 9.79 22.36 0.22 -1.40 16 18 C 0.12 1.86 7.29 22.34 0.16 2.02 16 19 F -0.12 -1.76 17.26 44.97 0.78 -0.98 16 20 C -0.08 -1.48 9.67 22.52 0.22 -1.26 16 21 C 0.00 -0.11 5.89 -19.96 -0.12 -0.23 16 22 C 0.20 5.57 7.90 137.35 1.09 6.65 16 23 N -0.27 -9.72 10.05 -52.21 -0.52 -10.24 16 24 N -0.07 -1.99 13.47 37.02 0.50 -1.49 16 25 N -0.20 -3.74 7.90 37.02 0.29 -3.44 16 26 H 0.50 3.89 8.96 -347.53 -3.12 0.77 16 27 N -0.27 -5.92 12.08 -52.15 -0.63 -6.55 16 28 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 29 H 0.40 20.04 7.90 -92.71 -0.73 19.31 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.08 2.82 7.61 -2.38 -0.02 2.80 16 32 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.18 2.30 7.88 -2.91 -0.02 2.28 16 Total: -1.00 -77.33 327.75 2.35 -74.98 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -2.60 Total: 15.88 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 4.23 Total: 17.79 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -1.70 Total: -103.66 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.30 Total: -48.62 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.78 Total: -0.98 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -77.33 2.35 -74.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.877 kcal (2) G-P(sol) polarization free energy of solvation -77.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds