Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 299.99597 * 3 2 1 6 6 H 1.48501 * 109.47161 * 59.99868 * 3 2 1 7 7 C 1.38955 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99748 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99928 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99824 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47042 * 180.02562 * 12 10 9 14 14 C 1.34781 * 120.00225 * 180.02562 * 13 12 10 15 15 O 1.21377 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.49254 * 120.00129 * 180.02562 * 14 13 12 17 17 O 1.21413 * 120.00345 * 359.97438 * 16 14 13 18 18 N 1.34781 * 120.00129 * 179.97438 * 16 14 13 19 19 C 1.39360 * 120.00414 * 179.97438 * 18 16 14 20 20 C 1.33614 * 124.75222 * 179.97438 * 19 18 16 21 21 C 1.44456 * 112.91586 * 180.02562 * 20 19 18 22 22 C 1.47033 * 123.44255 * 180.02562 * 21 20 19 23 23 O 1.21570 * 119.99897 * 359.97438 * 22 21 20 24 24 O 1.34808 * 119.99974 * 180.02562 * 22 21 20 25 25 C 1.36085 * 113.11769 * 359.97438 * 21 20 19 26 26 S 1.70413 * 110.95526 * 0.24627 * 25 21 20 27 27 H 0.97004 * 120.00138 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99901 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47325 * 60.00370 * 12 10 9 30 30 H 1.09001 * 109.47326 * 300.00065 * 12 10 9 31 31 H 0.96998 * 119.99971 * 0.02562 * 13 12 10 32 32 H 0.96998 * 119.99809 * 359.97438 * 18 16 14 33 33 H 1.08005 * 123.54382 * 359.97438 * 20 19 18 34 34 H 0.96702 * 116.99557 * 179.97438 * 24 22 21 35 35 H 1.08002 * 124.51902 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1956 -5.9765 0.0007 14 6 1.7463 -7.2472 -0.0002 15 8 0.5530 -7.4689 -0.0011 16 6 2.7162 -8.3817 0.0012 17 8 3.9099 -8.1599 0.0025 18 7 2.2670 -9.6524 0.0008 19 6 3.1725 -10.7117 0.0015 20 6 2.8330 -12.0040 0.0017 21 6 3.9769 -12.8861 0.0031 22 6 3.8693 -14.3525 0.0030 23 8 2.7748 -14.8817 0.0023 24 8 4.9843 -15.1101 0.0049 25 6 5.1643 -12.2213 0.0033 26 16 4.9186 -10.5350 0.0087 27 1 -0.4850 0.8401 -0.0004 28 1 0.3532 -2.3906 -0.0002 29 1 0.6173 -4.9205 -0.8903 30 1 0.6166 -4.9209 0.8897 31 1 3.1492 -5.7992 0.0018 32 1 1.3133 -9.8296 0.0001 33 1 1.8107 -12.3524 0.0018 34 1 4.8631 -16.0695 0.0051 35 1 6.1330 -12.6987 0.0046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -156.790377 kcal Electronic energy + Delta-G solvation = -25021.177861 eV Core-core repulsion = 20725.411243 eV Total energy + Delta-G solvation = -4295.766618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18093 -40.49374 -39.22460 -38.19771 -37.75231 -36.36968 -35.36882 -34.51128 -33.82943 -31.48395 -29.80579 -28.36990 -25.85430 -25.44897 -24.19533 -22.38192 -21.30828 -20.20052 -19.75191 -18.64138 -18.48708 -18.34562 -17.99493 -16.96902 -16.71093 -16.44533 -15.96559 -15.77622 -15.59447 -15.32584 -15.10371 -14.67027 -14.21486 -14.06621 -13.98182 -13.61821 -13.30756 -13.20070 -13.11852 -12.37585 -12.15851 -12.10683 -11.96423 -11.70385 -11.48769 -11.36848 -11.20039 -10.79816 -10.46136 -10.38720 -9.93786 -9.72900 -9.24203 -8.90833 -8.76207 -8.59784 -8.19016 -6.59366 -4.01542 0.24677 0.84114 0.85907 1.51368 1.58177 1.89747 2.70060 2.73390 2.95471 3.05301 3.18809 3.24962 3.36578 3.62286 4.02988 4.25203 4.53569 4.69340 4.84886 4.90908 5.08402 5.16997 5.27115 5.62100 5.64938 5.71903 5.79664 5.87329 6.07485 6.20060 6.43180 7.04725 7.37974 7.39566 7.53070 7.77114 7.88117 8.35098 8.96576 9.28906 9.76151 10.57263 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.041460 B = 0.001731 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.181962 B =16168.425991 C =16828.461508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.545 5.545 10 C 0.424 3.576 11 O -0.593 6.593 12 C 0.105 3.895 13 N -0.666 5.666 14 C 0.513 3.487 15 O -0.523 6.523 16 C 0.505 3.495 17 O -0.485 6.485 18 N -0.608 5.608 19 C 0.008 3.992 20 C -0.132 4.132 21 C -0.135 4.135 22 C 0.548 3.452 23 O -0.515 6.515 24 O -0.513 6.513 25 C -0.232 4.232 26 S 0.332 5.668 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.425 0.575 32 H 0.432 0.568 33 H 0.158 0.842 34 H 0.415 0.585 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -24.464 0.015 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.125 0.875 9 N -0.180 5.180 10 C 0.209 3.791 11 O -0.479 6.479 12 C -0.022 4.022 13 N -0.321 5.321 14 C 0.291 3.709 15 O -0.400 6.400 16 C 0.286 3.714 17 O -0.358 6.358 18 N -0.255 5.255 19 C -0.205 4.205 20 C -0.163 4.163 21 C -0.151 4.151 22 C 0.391 3.609 23 O -0.405 6.405 24 O -0.325 6.325 25 C -0.371 4.371 26 S 0.596 5.404 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.266 0.734 32 H 0.273 0.727 33 H 0.176 0.824 34 H 0.273 0.727 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.451 -22.609 0.024 23.805 hybrid contribution -1.451 -1.198 -0.009 1.882 sum 6.000 -23.807 0.015 24.551 Atomic orbital electron populations 1.69615 1.06044 1.28576 1.49025 1.25343 0.95683 1.00020 0.96590 0.85738 0.79725 0.80658 0.77873 1.19063 1.20560 1.20565 1.19803 0.93569 0.81853 1.48308 0.87475 1.41780 1.09501 1.04413 1.62286 1.19590 0.88316 0.84817 0.86360 1.90538 1.13514 1.86577 1.57274 1.21179 0.91536 0.85354 1.04088 1.45490 1.13282 1.03608 1.69679 1.19290 0.87915 0.83856 0.79820 1.90805 1.15397 1.84495 1.49279 1.20631 0.89314 0.84008 0.77400 1.90723 1.15986 1.83096 1.46021 1.42487 1.10620 1.02716 1.69700 1.21927 0.97104 0.90317 1.11107 1.20628 0.99984 0.88806 1.06916 1.18704 0.92567 0.89927 1.13923 1.20131 0.81368 0.87459 0.71982 1.90918 1.28456 1.74588 1.46506 1.84565 1.37093 1.24839 1.86031 1.26551 1.02732 1.03396 1.04468 1.84457 0.93671 0.96056 1.66251 0.91541 0.76988 0.88876 0.88884 0.73428 0.72740 0.82401 0.72677 0.80213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.03 13.05 55.50 0.72 -22.30 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 19.97 29.55 -169.99 -5.02 14.95 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.31 -8.03 9.68 -14.93 -0.14 -8.18 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -12.83 5.29 -10.96 -0.06 -12.89 16 10 C 0.42 9.16 7.85 -10.98 -0.09 9.07 16 11 O -0.59 -14.65 15.24 5.55 0.08 -14.57 16 12 C 0.11 1.73 6.15 -5.20 -0.03 1.70 16 13 N -0.67 -10.25 5.52 -61.97 -0.34 -10.59 16 14 C 0.51 7.09 7.88 -11.68 -0.09 7.00 16 15 O -0.52 -7.82 16.47 5.47 0.09 -7.73 16 16 C 0.50 6.15 7.85 -11.68 -0.09 6.05 16 17 O -0.48 -6.55 13.94 5.44 0.08 -6.47 16 18 N -0.61 -5.99 5.41 -11.48 -0.06 -6.05 16 19 C 0.01 0.08 7.10 -15.74 -0.11 -0.03 16 20 C -0.13 -1.22 10.11 -38.76 -0.39 -1.62 16 21 C -0.13 -1.24 5.98 -104.66 -0.63 -1.87 16 22 C 0.55 5.14 8.30 34.30 0.28 5.42 16 23 O -0.51 -6.27 17.58 -19.32 -0.34 -6.61 16 24 O -0.51 -3.19 13.08 -40.78 -0.53 -3.73 16 25 C -0.23 -1.80 10.54 29.96 0.32 -1.48 16 26 S 0.33 2.98 20.05 -107.50 -2.16 0.82 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.40 8.87 7.90 -40.82 -0.32 8.55 16 29 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.43 6.93 6.90 -40.82 -0.28 6.64 16 32 H 0.43 3.51 8.27 -40.82 -0.34 3.17 16 33 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.41 0.74 9.11 45.56 0.42 1.16 16 35 H 0.18 1.01 8.01 -52.49 -0.42 0.58 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -32.61 343.45 -5.16 -37.77 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -1.73 Total: 15.57 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: -1.07 Total: 16.66 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.26 Total: -51.84 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.62 Total: -39.10 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.16 Total: 0.82 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.61 -5.16 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.022 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds