Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47161 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 299.99597 * 3 2 1 6 6 H 1.48501 * 109.47161 * 59.99868 * 3 2 1 7 7 C 1.38955 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99748 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21285 * 119.99928 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99824 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47042 * 180.02562 * 12 10 9 14 14 C 1.34781 * 120.00225 * 180.02562 * 13 12 10 15 15 O 1.21377 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.49254 * 120.00129 * 180.02562 * 14 13 12 17 17 O 1.21413 * 120.00345 * 359.97438 * 16 14 13 18 18 N 1.34781 * 120.00129 * 179.97438 * 16 14 13 19 19 C 1.39360 * 120.00414 * 179.97438 * 18 16 14 20 20 C 1.33614 * 124.75222 * 179.97438 * 19 18 16 21 21 C 1.44456 * 112.91586 * 180.02562 * 20 19 18 22 22 C 1.47033 * 123.44255 * 180.02562 * 21 20 19 23 23 O 1.21570 * 119.99897 * 359.97438 * 22 21 20 24 24 O 1.34808 * 119.99974 * 180.02562 * 22 21 20 25 25 C 1.36085 * 113.11769 * 359.97438 * 21 20 19 26 26 S 1.70413 * 110.95526 * 0.24627 * 25 21 20 27 27 H 0.97004 * 120.00138 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99901 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47325 * 60.00370 * 12 10 9 30 30 H 1.09001 * 109.47326 * 300.00065 * 12 10 9 31 31 H 0.96998 * 119.99971 * 0.02562 * 13 12 10 32 32 H 0.96998 * 119.99809 * 359.97438 * 18 16 14 33 33 H 1.08005 * 123.54382 * 359.97438 * 20 19 18 34 34 H 0.96702 * 116.99557 * 179.97438 * 24 22 21 35 35 H 1.08002 * 124.51902 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1956 -5.9765 0.0007 14 6 1.7463 -7.2472 -0.0002 15 8 0.5530 -7.4689 -0.0011 16 6 2.7162 -8.3817 0.0012 17 8 3.9099 -8.1599 0.0025 18 7 2.2670 -9.6524 0.0008 19 6 3.1725 -10.7117 0.0015 20 6 2.8330 -12.0040 0.0017 21 6 3.9769 -12.8861 0.0031 22 6 3.8693 -14.3525 0.0030 23 8 2.7748 -14.8817 0.0023 24 8 4.9843 -15.1101 0.0049 25 6 5.1643 -12.2213 0.0033 26 16 4.9186 -10.5350 0.0087 27 1 -0.4850 0.8401 -0.0004 28 1 0.3532 -2.3906 -0.0002 29 1 0.6173 -4.9205 -0.8903 30 1 0.6166 -4.9209 0.8897 31 1 3.1492 -5.7992 0.0018 32 1 1.3133 -9.8296 0.0001 33 1 1.8107 -12.3524 0.0018 34 1 4.8631 -16.0695 0.0051 35 1 6.1330 -12.6987 0.0046 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -184.069394 kcal Electronic energy + Delta-G solvation = -25022.360768 eV Core-core repulsion = 20725.411243 eV Total energy + Delta-G solvation = -4296.949525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.061 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19132 -41.18787 -40.55229 -39.69157 -38.52501 -37.02411 -36.49541 -35.98117 -35.23488 -33.38479 -30.64176 -29.71404 -26.98556 -26.51547 -25.53463 -23.16513 -22.24296 -21.48986 -20.99629 -20.13242 -19.46073 -19.29466 -19.02881 -17.99620 -17.49772 -17.48920 -17.22331 -16.91348 -16.68282 -16.43045 -16.36091 -16.16231 -15.72613 -15.28757 -15.12512 -14.73120 -14.19102 -14.03491 -13.89650 -13.77800 -13.62396 -13.55419 -13.08660 -12.91967 -12.61076 -12.44201 -12.26295 -12.15336 -12.11016 -11.58836 -11.58247 -10.95487 -10.58788 -10.47820 -10.09402 -9.61992 -9.34546 -8.51443 -6.01099 -0.49248 -0.02829 0.13964 0.73206 0.76412 1.01210 1.35334 1.44564 1.57865 1.84379 1.90914 2.06131 2.06904 2.27165 2.43703 3.03315 3.16089 3.17798 3.90706 4.16009 4.17836 4.24212 4.37301 4.37701 4.45960 4.61393 4.90335 4.95768 5.06742 5.39319 5.54736 5.56802 5.91029 6.05145 6.34397 6.47734 6.64535 6.98077 7.04181 7.43265 7.94363 8.65286 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.041460 B = 0.001731 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.181962 B =16168.425991 C =16828.461508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.008 4.008 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.556 5.556 10 C 0.429 3.571 11 O -0.625 6.625 12 C 0.119 3.881 13 N -0.673 5.673 14 C 0.520 3.480 15 O -0.531 6.531 16 C 0.510 3.490 17 O -0.501 6.501 18 N -0.594 5.594 19 C -0.012 4.012 20 C -0.124 4.124 21 C -0.158 4.158 22 C 0.554 3.446 23 O -0.550 6.550 24 O -0.503 6.503 25 C -0.206 4.206 26 S 0.326 5.674 27 H 0.280 0.720 28 H 0.401 0.599 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.421 0.579 32 H 0.440 0.560 33 H 0.164 0.836 34 H 0.434 0.566 35 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -25.544 0.014 26.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.192 5.192 10 C 0.216 3.784 11 O -0.513 6.513 12 C -0.008 4.008 13 N -0.328 5.328 14 C 0.300 3.700 15 O -0.409 6.409 16 C 0.291 3.709 17 O -0.376 6.376 18 N -0.242 5.242 19 C -0.223 4.223 20 C -0.156 4.156 21 C -0.174 4.174 22 C 0.398 3.602 23 O -0.443 6.443 24 O -0.317 6.317 25 C -0.345 4.345 26 S 0.590 5.410 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.261 0.739 32 H 0.282 0.718 33 H 0.181 0.819 34 H 0.296 0.704 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 7.816 -23.751 0.024 25.003 hybrid contribution -1.497 -1.041 -0.009 1.823 sum 6.319 -24.792 0.015 25.584 Atomic orbital electron populations 1.69668 1.06884 1.29575 1.49198 1.26074 0.96516 1.02538 0.95777 0.84840 0.78134 0.76919 0.78276 1.19585 1.19684 1.19696 1.19760 0.92970 0.83558 1.50340 0.89656 1.41807 1.09658 1.04465 1.63238 1.20399 0.88123 0.85989 0.83889 1.90517 1.15323 1.87444 1.57978 1.21039 0.91100 0.82799 1.05881 1.45478 1.12808 1.03962 1.70549 1.19443 0.88019 0.83668 0.78858 1.90801 1.15911 1.84627 1.49519 1.20194 0.88632 0.84201 0.77857 1.90728 1.16309 1.83408 1.47194 1.42315 1.11157 1.02028 1.68671 1.21998 0.97367 0.90240 1.12734 1.20771 1.00556 0.88683 1.05553 1.18827 0.92967 0.90207 1.15361 1.20113 0.81367 0.87615 0.71081 1.90907 1.29791 1.75190 1.48442 1.84517 1.35525 1.26493 1.85208 1.26761 1.03370 1.02515 1.01879 1.84541 0.93402 0.96932 1.66167 0.91058 0.76472 0.86995 0.87004 0.73902 0.71823 0.81873 0.70358 0.77800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.87 13.05 21.66 0.28 -46.59 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 3 Si 0.99 40.81 29.55 68.60 2.03 42.84 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.34 -17.99 9.68 84.04 0.81 -17.17 16 8 H 0.09 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.56 -26.45 5.29 -306.99 -1.62 -28.07 16 10 C 0.43 18.60 7.85 87.66 0.69 19.29 16 11 O -0.62 -31.36 15.24 -3.04 -0.05 -31.41 16 12 C 0.12 3.78 6.15 85.63 0.53 4.30 16 13 N -0.67 -20.22 5.52 -468.33 -2.59 -22.80 16 14 C 0.52 13.82 7.88 87.21 0.69 14.51 16 15 O -0.53 -15.07 16.47 -3.33 -0.05 -15.13 16 16 C 0.51 11.95 7.85 87.21 0.68 12.64 16 17 O -0.50 -13.22 13.94 -3.44 -0.05 -13.27 16 18 N -0.59 -11.06 5.41 -308.58 -1.67 -12.72 16 19 C -0.01 -0.21 7.10 82.45 0.59 0.37 16 20 C -0.12 -2.15 10.11 22.80 0.23 -1.92 16 21 C -0.16 -2.64 5.98 -19.89 -0.12 -2.75 16 22 C 0.55 9.51 8.30 70.13 0.58 10.09 16 23 O -0.55 -12.94 17.58 19.61 0.34 -12.60 16 24 O -0.50 -5.05 13.08 -57.20 -0.75 -5.80 16 25 C -0.21 -2.74 10.54 67.32 0.71 -2.03 16 26 S 0.33 5.40 20.05 -56.49 -1.13 4.27 16 27 H 0.28 13.43 8.31 -92.70 -0.77 12.66 16 28 H 0.40 18.03 7.90 -92.70 -0.73 17.30 16 29 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.42 13.67 6.90 -92.71 -0.64 13.03 16 32 H 0.44 6.61 8.27 -92.71 -0.77 5.84 16 33 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.43 0.53 9.11 -74.06 -0.67 -0.14 16 35 H 0.21 1.63 8.01 -2.91 -0.02 1.60 16 Total: -1.00 -69.48 343.45 -0.97 -70.44 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -1.57 Total: 33.45 kcal Atomic # 6 Polarization: 31.54 SS G_CDS: 5.86 Total: 37.39 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -5.60 Total: -110.19 kcal Atomic # 8 Polarization: -77.65 SS G_CDS: -0.55 Total: -78.20 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.13 Total: 4.27 kcal Total: -69.48 -0.97 -70.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.626 kcal (2) G-P(sol) polarization free energy of solvation -69.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds