Wall clock time and date at job start Sat Apr 11 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48489 * 109.47592 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46663 * 299.99952 * 3 2 1 6 6 H 1.48502 * 109.47258 * 59.99541 * 3 2 1 7 7 C 1.37872 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00458 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47081 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47268 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99816 * 179.97438 * 12 11 10 14 14 O 1.21601 * 120.00280 * 359.97438 * 13 12 11 15 15 C 1.47436 * 119.99934 * 179.97438 * 13 12 11 16 16 C 1.39902 * 120.17040 * 5.98718 * 15 13 12 17 17 C 1.37771 * 120.03949 * 180.25752 * 16 15 13 18 18 Br 1.89096 * 119.80723 * 179.76761 * 17 16 15 19 19 C 1.38681 * 120.38770 * 359.75042 * 17 16 15 20 20 C 1.38461 * 120.34210 * 359.97438 * 19 17 16 21 21 N 1.40019 * 120.02402 * 180.02562 * 20 19 17 22 22 C 1.39576 * 119.95227 * 0.02562 * 20 19 17 23 23 N 1.39189 * 120.19134 * 179.97438 * 22 20 19 24 24 H 0.97003 * 119.99811 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46784 * 59.99756 * 9 7 2 26 26 H 1.08999 * 109.46785 * 299.99838 * 9 7 2 27 27 H 1.08999 * 109.47438 * 60.00182 * 10 9 7 28 28 H 1.09004 * 109.47323 * 300.00083 * 10 9 7 29 29 H 1.08999 * 109.46987 * 59.99721 * 11 10 9 30 30 H 1.09004 * 109.46959 * 300.00121 * 11 10 9 31 31 H 0.96993 * 120.00254 * 359.97438 * 12 11 10 32 32 H 1.07998 * 119.97882 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.82927 * 180.02562 * 19 17 16 34 34 H 0.96995 * 119.99496 * 179.97438 * 21 20 19 35 35 H 0.96999 * 119.99783 * 359.97438 * 21 20 19 36 36 H 0.96993 * 119.99877 * 354.19290 * 23 22 20 37 37 H 0.97002 * 119.99847 * 173.91882 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9831 -7.3712 0.0006 14 8 0.7876 -7.5935 0.0007 15 6 2.9412 -8.4919 0.0007 16 6 4.3124 -8.2446 0.1268 17 6 5.2057 -9.2934 0.1211 18 35 7.0582 -8.9512 0.2854 19 6 4.7543 -10.5988 -0.0039 20 6 3.4003 -10.8621 -0.1240 21 7 2.9518 -12.1826 -0.2493 22 6 2.4827 -9.8103 -0.1200 23 7 1.1205 -10.0693 -0.2409 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0445 -0.8903 30 1 0.8534 -5.0451 0.8897 31 1 3.3860 -5.9233 0.0008 32 1 4.6711 -7.2307 0.2248 33 1 5.4625 -11.4141 -0.0068 34 1 2.0031 -12.3666 -0.3330 35 1 3.5898 -12.9132 -0.2524 36 1 0.8120 -10.9727 -0.4126 37 1 0.4795 -9.3470 -0.1495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001628624089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:20 Heat of formation + Delta-G solvation = -17.246323 kcal Electronic energy + Delta-G solvation = -20541.762836 eV Core-core repulsion = 17171.409005 eV Total energy + Delta-G solvation = -3370.353831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60853 -38.77403 -35.82269 -35.17734 -34.07251 -33.33912 -31.67523 -30.96363 -29.57620 -27.70576 -26.74458 -24.29548 -22.85026 -21.77421 -20.82452 -20.15700 -18.31731 -17.66908 -17.10735 -16.39467 -16.04083 -15.58281 -15.40932 -15.38623 -14.56657 -14.44913 -14.30388 -14.00613 -13.57126 -13.52433 -12.32504 -12.26179 -12.03352 -11.90337 -11.79135 -11.76384 -11.05007 -10.91471 -10.73519 -10.57119 -10.43470 -10.05227 -9.92829 -9.87592 -9.40130 -9.10570 -8.92013 -8.48615 -8.37334 -7.27516 -6.01854 -4.04703 0.72664 1.19229 1.55164 2.80424 3.23709 3.30632 3.38228 3.41612 3.43950 3.69194 3.77877 4.44335 4.48215 4.76630 4.99766 5.09101 5.33602 5.34267 5.55387 5.66698 5.76255 5.76563 5.97951 6.14501 6.24590 6.40568 6.59074 6.78279 6.89126 6.99212 7.30728 7.35513 7.58722 7.63727 7.73880 7.75753 7.97056 8.34062 8.39005 9.02224 9.59708 11.09510 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.002571 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.457055 B =10889.921265 C =12929.405487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.715 5.715 13 C 0.569 3.431 14 O -0.555 6.555 15 C -0.186 4.186 16 C -0.055 4.055 17 C -0.112 4.112 18 Br -0.057 7.057 19 C -0.108 4.108 20 C 0.138 3.862 21 N -0.880 5.880 22 C 0.239 3.761 23 N -0.854 5.854 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.400 0.600 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.394 0.606 35 H 0.401 0.599 36 H 0.386 0.614 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.587 -27.693 -0.187 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.365 5.365 13 C 0.358 3.642 14 O -0.435 6.435 15 C -0.197 4.197 16 C -0.078 4.078 17 C -0.194 4.194 18 Br 0.028 6.972 19 C -0.135 4.135 20 C 0.032 3.968 21 N -0.424 5.424 22 C 0.125 3.875 23 N -0.404 5.404 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.222 0.778 35 H 0.230 0.770 36 H 0.214 0.786 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 11.233 -27.414 -0.116 29.627 hybrid contribution 0.058 0.464 -0.102 0.478 sum 11.291 -26.951 -0.218 29.221 Atomic orbital electron populations 1.69975 1.06068 1.26570 1.50727 1.25028 0.94854 0.99326 0.95283 0.86529 0.80097 0.83746 0.77587 1.19712 1.21015 1.21006 1.21247 0.93066 0.90909 1.50726 0.92544 1.19031 0.93836 0.90861 0.97647 1.21905 0.99820 0.93245 1.01046 1.21704 0.91818 0.84973 1.02159 1.46064 1.11078 1.05602 1.73725 1.17922 0.87445 0.82838 0.76023 1.90375 1.16697 1.83647 1.52808 1.19065 0.93289 0.91499 1.15841 1.20813 0.90728 0.98498 0.97723 1.20914 0.90167 0.94998 1.13306 1.96686 1.07043 1.96117 1.97332 1.20282 0.93135 0.95627 1.04474 1.17074 0.91677 0.84617 1.03465 1.42122 1.10075 1.03654 1.86531 1.17385 0.84908 0.91002 0.94238 1.43353 1.04336 1.14010 1.78739 0.92995 0.96274 0.96258 0.92594 0.92606 0.91537 0.91528 0.76471 0.84887 0.85018 0.77803 0.77003 0.78646 0.73369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16 12 N -0.72 -10.36 5.50 -61.38 -0.34 -10.70 16 13 C 0.57 8.51 7.75 -12.51 -0.10 8.41 16 14 O -0.55 -9.50 13.63 5.28 0.07 -9.43 16 15 C -0.19 -2.33 5.89 -104.83 -0.62 -2.95 16 16 C -0.05 -0.60 9.24 -39.13 -0.36 -0.97 16 17 C -0.11 -1.14 6.21 -39.59 -0.25 -1.39 16 18 Br -0.06 -0.54 33.68 -68.01 -2.29 -2.83 16 19 C -0.11 -0.98 9.61 -39.34 -0.38 -1.36 16 20 C 0.14 1.25 6.77 -83.54 -0.57 0.68 16 21 N -0.88 -4.95 9.09 32.52 0.30 -4.65 16 22 C 0.24 2.67 6.78 -83.32 -0.57 2.10 16 23 N -0.85 -8.65 8.92 32.68 0.29 -8.36 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 4.86 6.53 -40.82 -0.27 4.59 16 32 H 0.13 1.31 6.44 -52.49 -0.34 0.97 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.39 1.69 7.02 -40.82 -0.29 1.40 16 35 H 0.40 1.48 8.84 -40.82 -0.36 1.12 16 36 H 0.39 2.65 7.02 -40.82 -0.29 2.37 16 37 H 0.42 5.25 5.34 -40.95 -0.22 5.03 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -32.00 331.87 -9.06 -41.05 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.26 Total: 8.33 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -3.54 Total: -8.84 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.99 Total: -49.76 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.29 Total: -2.83 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.00 -9.06 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628624089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.808 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds