Wall clock time and date at job start Sat Apr 11 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00201 * 2 1 4 4 H 1.48489 * 109.47592 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46663 * 299.99952 * 3 2 1 6 6 H 1.48502 * 109.47258 * 59.99541 * 3 2 1 7 7 C 1.37872 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00458 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47081 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47268 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99816 * 179.97438 * 12 11 10 14 14 O 1.21601 * 120.00280 * 359.97438 * 13 12 11 15 15 C 1.47436 * 119.99934 * 179.97438 * 13 12 11 16 16 C 1.39902 * 120.17040 * 5.98718 * 15 13 12 17 17 C 1.37771 * 120.03949 * 180.25752 * 16 15 13 18 18 Br 1.89096 * 119.80723 * 179.76761 * 17 16 15 19 19 C 1.38681 * 120.38770 * 359.75042 * 17 16 15 20 20 C 1.38461 * 120.34210 * 359.97438 * 19 17 16 21 21 N 1.40019 * 120.02402 * 180.02562 * 20 19 17 22 22 C 1.39576 * 119.95227 * 0.02562 * 20 19 17 23 23 N 1.39189 * 120.19134 * 179.97438 * 22 20 19 24 24 H 0.97003 * 119.99811 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46784 * 59.99756 * 9 7 2 26 26 H 1.08999 * 109.46785 * 299.99838 * 9 7 2 27 27 H 1.08999 * 109.47438 * 60.00182 * 10 9 7 28 28 H 1.09004 * 109.47323 * 300.00083 * 10 9 7 29 29 H 1.08999 * 109.46987 * 59.99721 * 11 10 9 30 30 H 1.09004 * 109.46959 * 300.00121 * 11 10 9 31 31 H 0.96993 * 120.00254 * 359.97438 * 12 11 10 32 32 H 1.07998 * 119.97882 * 0.02562 * 16 15 13 33 33 H 1.07998 * 119.82927 * 180.02562 * 19 17 16 34 34 H 0.96995 * 119.99496 * 179.97438 * 21 20 19 35 35 H 0.96999 * 119.99783 * 359.97438 * 21 20 19 36 36 H 0.96993 * 119.99877 * 354.19290 * 23 22 20 37 37 H 0.97002 * 119.99847 * 173.91882 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1006 0.0005 13 6 1.9831 -7.3712 0.0006 14 8 0.7876 -7.5935 0.0007 15 6 2.9412 -8.4919 0.0007 16 6 4.3124 -8.2446 0.1268 17 6 5.2057 -9.2934 0.1211 18 35 7.0582 -8.9512 0.2854 19 6 4.7543 -10.5988 -0.0039 20 6 3.4003 -10.8621 -0.1240 21 7 2.9518 -12.1826 -0.2493 22 6 2.4827 -9.8103 -0.1200 23 7 1.1205 -10.0693 -0.2409 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0445 -0.8903 30 1 0.8534 -5.0451 0.8897 31 1 3.3860 -5.9233 0.0008 32 1 4.6711 -7.2307 0.2248 33 1 5.4625 -11.4141 -0.0068 34 1 2.0031 -12.3666 -0.3330 35 1 3.5898 -12.9132 -0.2524 36 1 0.8120 -10.9727 -0.4126 37 1 0.4795 -9.3470 -0.1495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001628624089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:19 Heat of formation + Delta-G solvation = -40.120719 kcal Electronic energy + Delta-G solvation = -20542.754745 eV Core-core repulsion = 17171.409005 eV Total energy + Delta-G solvation = -3371.345739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.048 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55937 -39.77525 -37.11779 -36.15313 -35.14633 -34.83096 -33.18018 -32.01119 -30.45573 -28.54665 -28.39140 -25.61871 -24.27077 -22.67003 -22.22345 -21.50726 -19.11549 -18.69512 -18.33120 -17.90013 -17.08026 -16.72865 -16.58130 -16.35259 -16.25055 -15.55693 -15.32739 -14.86794 -14.75874 -14.57098 -14.22804 -13.74902 -13.49647 -13.06652 -12.78686 -12.77110 -12.64923 -12.52474 -12.33035 -11.75438 -11.66510 -11.58275 -11.23340 -11.16799 -10.86344 -10.82118 -10.55134 -10.16954 -9.26931 -8.18929 -7.98230 -6.29922 -0.12447 0.41274 0.78791 1.42357 1.42645 1.55896 1.79617 2.14099 2.43324 2.76007 2.80413 3.03657 3.15115 3.60045 3.93873 4.18619 4.22751 4.24093 4.31235 4.56323 4.61578 4.79812 4.92356 4.95503 4.99471 5.17627 5.21355 5.38950 5.50809 5.53513 5.72121 5.85389 6.20792 6.24106 6.49504 6.62230 6.84111 6.87757 6.96847 7.23736 7.39683 8.93393 Molecular weight = 341.05amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.002571 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.457055 B =10889.921265 C =12929.405487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.104 4.104 11 C 0.131 3.869 12 N -0.709 5.709 13 C 0.565 3.435 14 O -0.583 6.583 15 C -0.204 4.204 16 C -0.062 4.062 17 C -0.116 4.116 18 Br -0.050 7.050 19 C -0.108 4.108 20 C 0.146 3.854 21 N -0.866 5.866 22 C 0.226 3.774 23 N -0.853 5.853 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.412 0.588 32 H 0.140 0.860 33 H 0.155 0.845 34 H 0.401 0.599 35 H 0.414 0.586 36 H 0.400 0.600 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.762 -28.991 -0.244 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.142 4.142 11 C 0.007 3.993 12 N -0.359 5.359 13 C 0.356 3.644 14 O -0.465 6.465 15 C -0.215 4.215 16 C -0.085 4.085 17 C -0.198 4.198 18 Br 0.035 6.965 19 C -0.135 4.135 20 C 0.038 3.962 21 N -0.411 5.411 22 C 0.111 3.889 23 N -0.402 5.402 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.250 0.750 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.231 0.769 35 H 0.245 0.755 36 H 0.230 0.770 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 13.441 -28.783 -0.178 31.767 hybrid contribution -0.635 0.745 -0.087 0.982 sum 12.806 -28.038 -0.266 30.826 Atomic orbital electron populations 1.70114 1.07897 1.27700 1.51843 1.26004 0.95743 1.03494 0.94829 0.85383 0.79226 0.78722 0.77620 1.18248 1.20582 1.20570 1.21716 0.93746 0.92047 1.50231 0.91617 1.18936 0.94397 0.92839 0.95150 1.21617 0.98525 0.91911 1.02134 1.21284 0.91809 0.85158 1.01055 1.45834 1.11231 1.04909 1.73935 1.18352 0.87600 0.83265 0.75215 1.90368 1.18018 1.84113 1.54019 1.18896 0.93337 0.91088 1.18224 1.20856 0.90262 0.99229 0.98190 1.21040 0.90419 0.95340 1.12967 1.96693 1.06342 1.96179 1.97308 1.20542 0.93487 0.95847 1.03611 1.17095 0.91374 0.85390 1.02357 1.42111 1.10980 1.02684 1.85307 1.17590 0.85516 0.91247 0.94533 1.43295 1.03946 1.14536 1.78417 0.92826 0.98843 0.98827 0.91397 0.91434 0.92755 0.92751 0.74987 0.84261 0.82779 0.76892 0.75522 0.76972 0.74513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.95 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -4.03 5.27 30.59 0.16 -3.87 16 11 C 0.13 4.61 5.67 86.38 0.49 5.10 16 12 N -0.71 -20.41 5.50 -466.37 -2.57 -22.98 16 13 C 0.57 16.98 7.75 86.67 0.67 17.65 16 14 O -0.58 -20.39 13.63 -4.04 -0.06 -20.45 16 15 C -0.20 -5.00 5.89 -20.00 -0.12 -5.12 16 16 C -0.06 -1.30 9.24 22.56 0.21 -1.10 16 17 C -0.12 -2.15 6.21 22.27 0.14 -2.01 16 18 Br -0.05 -0.86 33.68 -20.37 -0.69 -1.54 16 19 C -0.11 -1.68 9.61 22.43 0.22 -1.46 16 20 C 0.15 2.31 6.77 38.21 0.26 2.57 16 21 N -0.87 -7.36 9.09 -51.02 -0.46 -7.82 16 22 C 0.23 4.79 6.78 38.75 0.26 5.05 16 23 N -0.85 -16.65 8.92 -50.52 -0.45 -17.10 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 26 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.41 9.67 6.53 -92.71 -0.61 9.06 16 32 H 0.14 2.59 6.44 -2.91 -0.02 2.57 16 33 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.40 2.40 7.02 -92.71 -0.65 1.75 16 35 H 0.41 1.71 8.84 -92.71 -0.82 0.89 16 36 H 0.40 4.99 7.02 -92.71 -0.65 4.34 16 37 H 0.41 10.30 5.34 -94.83 -0.51 9.80 16 Total: -1.00 -69.36 331.87 -0.84 -70.20 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -2.07 Total: 21.97 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.13 Total: -11.43 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.20 Total: -104.77 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.06 Total: -20.45 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -0.69 Total: -1.54 kcal Total: -69.36 -0.84 -70.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001628624089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.081 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds