Wall clock time and date at job start Sat Apr 11 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21252 * 120.00271 * 2 1 4 4 C 1.47163 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.17212 * 0.02562 * 4 2 1 6 6 C 1.37864 * 119.82558 * 179.97438 * 5 4 2 7 7 C 1.38430 * 120.17128 * 0.27823 * 6 5 4 8 8 C 1.38377 * 120.34822 * 359.44567 * 7 6 5 9 9 S 1.76197 * 119.91329 * 180.30137 * 8 7 6 10 10 O 1.42099 * 106.40277 * 23.78828 * 9 8 7 11 11 O 1.42101 * 106.40396 * 156.71097 * 9 8 7 12 12 N 1.65596 * 107.21933 * 270.25049 * 9 8 7 13 13 C 1.46502 * 120.00204 * 64.99622 * 12 9 8 14 14 C 1.53000 * 109.47331 * 165.00071 * 13 12 9 15 15 C 1.50691 * 109.47062 * 180.02562 * 14 13 12 16 16 O 1.21216 * 120.00262 * 0.02562 * 15 14 13 17 17 O 1.34315 * 120.00150 * 179.97438 * 15 14 13 18 18 C 1.34918 * 117.00344 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00030 * 0.02562 * 18 17 15 20 20 C 1.38755 * 120.00051 * 180.02562 * 18 17 15 21 21 N 1.31436 * 120.00100 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46869 * 59.99455 * 22 20 18 24 24 H 1.48495 * 109.47044 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46866 * 299.99900 * 22 20 18 26 26 C 1.37915 * 120.17373 * 0.55224 * 8 7 6 27 27 H 1.08991 * 109.47078 * 270.00631 * 1 2 3 28 28 H 1.09004 * 109.46403 * 30.00312 * 1 2 3 29 29 H 1.08999 * 109.46598 * 149.99629 * 1 2 3 30 30 H 1.07999 * 120.08688 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.90999 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.82062 * 179.69897 * 7 6 5 33 33 H 0.96999 * 120.00209 * 245.00259 * 12 9 8 34 34 H 1.09000 * 109.47031 * 285.00153 * 13 12 9 35 35 H 1.09000 * 109.46889 * 45.00284 * 13 12 9 36 36 H 1.09004 * 109.47222 * 300.00509 * 14 13 12 37 37 H 1.09000 * 109.46960 * 60.00257 * 14 13 12 38 38 H 0.97003 * 119.99999 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.08533 * 179.74995 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2437 -3.6777 0.0006 7 6 3.6280 -3.6734 0.0064 8 6 4.3235 -2.4772 0.0007 9 16 6.0854 -2.4852 0.0001 10 8 6.4808 -3.7369 -0.5441 11 8 6.4923 -1.2374 -0.5447 12 7 6.5761 -2.4871 1.5817 13 6 6.2758 -3.6354 2.4405 14 6 7.1353 -3.5657 3.7043 15 6 6.8268 -4.7472 4.5874 16 8 6.0016 -5.5644 4.2401 17 8 7.4670 -4.8955 5.7588 18 6 7.1443 -5.9751 6.5009 19 1 6.4012 -6.6729 6.1443 20 6 7.7673 -6.1888 7.7222 21 7 8.6721 -5.3398 8.1559 22 14 7.3211 -7.6840 8.7493 23 1 7.6110 -8.9191 7.9775 24 1 8.1221 -7.6825 9.9996 25 1 5.8756 -7.6391 9.0868 26 6 3.6412 -1.2786 0.0006 27 1 -0.3633 0.0001 1.0276 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 0.4671 -2.4928 0.0006 31 1 1.7079 -4.6154 0.0010 32 1 4.1679 -4.6088 0.0113 33 1 7.0623 -1.7279 1.9396 34 1 5.2215 -3.6167 2.7167 35 1 6.4943 -4.5581 1.9030 36 1 8.1897 -3.5844 3.4282 37 1 6.9168 -2.6430 4.2419 38 1 9.1078 -5.4894 9.0095 39 1 4.1855 -0.3458 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028611971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:39 Heat of formation + Delta-G solvation = -165.411511 kcal Electronic energy + Delta-G solvation = -26410.395062 eV Core-core repulsion = 22217.794947 eV Total energy + Delta-G solvation = -4192.600115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43667 -39.12544 -38.59001 -37.42012 -36.15967 -36.01752 -34.90462 -32.71746 -32.20262 -31.63887 -30.22338 -29.87396 -25.62602 -24.47887 -23.62316 -23.36651 -20.93347 -20.13828 -19.37098 -18.25897 -17.80075 -17.62512 -16.79018 -16.51036 -16.34431 -15.97411 -15.76509 -15.44102 -15.39703 -14.88947 -14.50606 -14.40756 -14.32369 -14.24310 -13.87304 -13.34541 -13.10003 -12.76531 -12.62831 -12.51448 -12.27210 -12.23534 -12.07150 -12.02054 -11.79472 -11.63230 -11.52682 -11.20552 -11.10075 -10.50027 -10.42928 -10.21303 -9.93404 -9.87127 -9.63006 -9.51683 -9.12952 -8.62611 -6.45885 -4.14212 0.00487 0.22376 0.54784 1.85848 2.74545 3.08698 3.12759 3.16186 3.20011 3.45453 3.49769 3.57243 3.89976 4.11821 4.30518 4.39884 4.45724 4.55328 4.67216 4.79672 4.83049 4.92645 4.97078 5.05615 5.15366 5.27608 5.33364 5.43475 5.50530 5.61363 5.64803 5.66155 5.74668 6.03414 6.16529 6.25371 6.64074 6.83047 7.05030 7.34344 7.89652 8.63313 9.02674 9.77898 10.71841 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.002490 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.849747 B =11244.155796 C =12047.102232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.453 6.453 4 C -0.197 4.197 5 C -0.021 4.021 6 C -0.149 4.149 7 C 0.014 3.986 8 C -0.689 4.689 9 S 2.700 3.300 10 O -0.950 6.950 11 O -0.957 6.957 12 N -1.115 6.115 13 C 0.129 3.871 14 C -0.111 4.111 15 C 0.399 3.601 16 O -0.558 6.558 17 O -0.212 6.212 18 C -0.384 4.384 19 H 0.096 0.904 20 C 0.042 3.958 21 N -0.864 5.864 22 Si 0.945 3.055 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.270 1.270 26 C 0.038 3.962 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.421 0.579 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.271 0.729 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 7.743 -16.035 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.273 3.727 3 O -0.328 6.328 4 C -0.198 4.198 5 C -0.040 4.040 6 C -0.168 4.168 7 C -0.005 4.005 8 C -0.774 4.774 9 S 2.788 3.212 10 O -0.940 6.940 11 O -0.947 6.947 12 N -0.877 5.877 13 C 0.004 3.996 14 C -0.150 4.150 15 C 0.245 3.755 16 O -0.456 6.456 17 O -0.119 6.119 18 C -0.460 4.460 19 H 0.114 0.886 20 C -0.162 4.162 21 N -0.501 5.501 22 Si 0.769 3.231 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.195 1.195 26 C 0.019 3.981 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.256 0.744 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.792 7.952 -16.713 23.082 hybrid contribution -0.783 -0.495 1.108 1.444 sum -14.575 7.457 -15.606 22.618 Atomic orbital electron populations 1.22245 0.93318 1.05088 1.05083 1.22481 0.91820 0.87322 0.71080 1.90577 1.72062 1.34114 1.36040 1.20661 0.94529 0.95369 1.09273 1.21816 1.00586 0.91516 0.90049 1.21350 0.94277 0.98816 1.02351 1.21347 0.95109 0.97021 0.87004 1.31125 1.28018 0.99184 1.19107 1.01785 0.73369 0.73719 0.72352 1.93613 1.80271 1.43907 1.76165 1.93610 1.81032 1.43881 1.76156 1.55475 1.72021 1.28933 1.31237 1.21107 0.99804 0.87525 0.91177 1.21163 1.02222 0.97646 0.93984 1.22853 0.82060 0.87369 0.83234 1.90564 1.35528 1.45255 1.74285 1.83866 1.56671 1.44305 1.27035 1.21178 1.24129 1.00859 0.99832 0.88626 1.25350 0.95518 0.98932 0.96399 1.69978 1.24182 1.35426 1.20526 0.85732 0.78736 0.80117 0.78509 1.19434 1.20373 1.19485 1.21189 0.93694 0.97221 0.86006 0.88120 0.89108 0.89487 0.84068 0.83970 0.83242 0.74419 0.90773 0.89051 0.88043 0.88294 0.91951 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.94 9.75 36.01 0.35 -0.59 16 2 C 0.40 3.56 7.23 -30.68 -0.22 3.34 16 3 O -0.45 -5.75 17.09 5.58 0.10 -5.66 16 4 C -0.20 -1.82 5.87 -105.06 -0.62 -2.43 16 5 C -0.02 -0.15 9.36 -39.10 -0.37 -0.51 16 6 C -0.15 -1.13 10.03 -39.65 -0.40 -1.53 16 7 C 0.01 0.14 9.52 -39.46 -0.38 -0.24 16 8 C -0.69 -7.46 5.94 -39.65 -0.24 -7.69 16 9 S 2.70 32.20 5.73 -107.50 -0.62 31.58 16 10 O -0.95 -13.77 16.75 -57.17 -0.96 -14.73 16 11 O -0.96 -13.34 17.27 -57.17 -0.99 -14.33 16 12 N -1.12 -12.22 6.00 -10.61 -0.06 -12.28 16 13 C 0.13 1.75 5.51 -4.04 -0.02 1.73 16 14 C -0.11 -1.75 5.95 -27.89 -0.17 -1.92 16 15 C 0.40 9.14 7.91 36.00 0.28 9.43 16 16 O -0.56 -13.84 15.22 -19.06 -0.29 -14.13 16 17 O -0.21 -5.84 9.75 -20.71 -0.20 -6.04 16 18 C -0.38 -11.04 9.65 30.92 0.30 -10.74 16 19 H 0.10 2.75 6.86 -52.49 -0.36 2.39 16 20 C 0.04 1.17 5.49 -17.53 -0.10 1.07 16 21 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 22 Si 0.94 20.83 29.55 -169.99 -5.02 15.80 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 26 C 0.04 0.42 9.07 -39.10 -0.35 0.06 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.21 6.47 -51.93 -0.34 -0.12 16 30 H 0.14 0.46 6.36 -52.49 -0.33 0.12 16 31 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.15 1.33 7.61 -52.49 -0.40 0.93 16 33 H 0.42 3.71 8.65 -34.47 -0.30 3.41 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.09 1.31 7.71 -51.93 -0.40 0.91 16 36 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.15 1.67 7.20 -52.49 -0.38 1.29 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -38.36 361.51 -7.93 -46.29 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.17 Total: 2.17 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.92 Total: -10.03 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.69 Total: -36.38 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -2.34 Total: -54.88 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 32.20 SS G_CDS: -0.62 Total: 31.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.36 -7.93 -46.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028611971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.120 kcal (2) G-P(sol) polarization free energy of solvation -38.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds