Wall clock time and date at job start Sat Apr 11 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21252 * 120.00271 * 2 1 4 4 C 1.47163 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.39878 * 120.17212 * 0.02562 * 4 2 1 6 6 C 1.37864 * 119.82558 * 179.97438 * 5 4 2 7 7 C 1.38430 * 120.17128 * 0.27823 * 6 5 4 8 8 C 1.38377 * 120.34822 * 359.44567 * 7 6 5 9 9 S 1.76197 * 119.91329 * 180.30137 * 8 7 6 10 10 O 1.42099 * 106.40277 * 23.78828 * 9 8 7 11 11 O 1.42101 * 106.40396 * 156.71097 * 9 8 7 12 12 N 1.65596 * 107.21933 * 270.25049 * 9 8 7 13 13 C 1.46502 * 120.00204 * 64.99622 * 12 9 8 14 14 C 1.53000 * 109.47331 * 165.00071 * 13 12 9 15 15 C 1.50691 * 109.47062 * 180.02562 * 14 13 12 16 16 O 1.21216 * 120.00262 * 0.02562 * 15 14 13 17 17 O 1.34315 * 120.00150 * 179.97438 * 15 14 13 18 18 C 1.34918 * 117.00344 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00030 * 0.02562 * 18 17 15 20 20 C 1.38755 * 120.00051 * 180.02562 * 18 17 15 21 21 N 1.31436 * 120.00100 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46869 * 59.99455 * 22 20 18 24 24 H 1.48495 * 109.47044 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46866 * 299.99900 * 22 20 18 26 26 C 1.37915 * 120.17373 * 0.55224 * 8 7 6 27 27 H 1.08991 * 109.47078 * 270.00631 * 1 2 3 28 28 H 1.09004 * 109.46403 * 30.00312 * 1 2 3 29 29 H 1.08999 * 109.46598 * 149.99629 * 1 2 3 30 30 H 1.07999 * 120.08688 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.90999 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.82062 * 179.69897 * 7 6 5 33 33 H 0.96999 * 120.00209 * 245.00259 * 12 9 8 34 34 H 1.09000 * 109.47031 * 285.00153 * 13 12 9 35 35 H 1.09000 * 109.46889 * 45.00284 * 13 12 9 36 36 H 1.09004 * 109.47222 * 300.00509 * 14 13 12 37 37 H 1.09000 * 109.46960 * 60.00257 * 14 13 12 38 38 H 0.97003 * 119.99999 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.08533 * 179.74995 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2429 -1.2745 0.0006 5 6 1.5471 -2.4879 0.0006 6 6 2.2437 -3.6777 0.0006 7 6 3.6280 -3.6734 0.0064 8 6 4.3235 -2.4772 0.0007 9 16 6.0854 -2.4852 0.0001 10 8 6.4808 -3.7369 -0.5441 11 8 6.4923 -1.2374 -0.5447 12 7 6.5761 -2.4871 1.5817 13 6 6.2758 -3.6354 2.4405 14 6 7.1353 -3.5657 3.7043 15 6 6.8268 -4.7472 4.5874 16 8 6.0016 -5.5644 4.2401 17 8 7.4670 -4.8955 5.7588 18 6 7.1443 -5.9751 6.5009 19 1 6.4012 -6.6729 6.1443 20 6 7.7673 -6.1888 7.7222 21 7 8.6721 -5.3398 8.1559 22 14 7.3211 -7.6840 8.7493 23 1 7.6110 -8.9191 7.9775 24 1 8.1221 -7.6825 9.9996 25 1 5.8756 -7.6391 9.0868 26 6 3.6412 -1.2786 0.0006 27 1 -0.3633 0.0001 1.0276 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 0.4671 -2.4928 0.0006 31 1 1.7079 -4.6154 0.0010 32 1 4.1679 -4.6088 0.0113 33 1 7.0623 -1.7279 1.9396 34 1 5.2215 -3.6167 2.7167 35 1 6.4943 -4.5581 1.9030 36 1 8.1897 -3.5844 3.4282 37 1 6.9168 -2.6430 4.2419 38 1 9.1078 -5.4894 9.0095 39 1 4.1855 -0.3458 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028611971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:38 Heat of formation + Delta-G solvation = -194.222847 kcal Electronic energy + Delta-G solvation = -26411.644415 eV Core-core repulsion = 22217.794947 eV Total energy + Delta-G solvation = -4193.849468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13507 -41.02705 -39.32052 -38.49648 -37.69212 -37.10084 -36.48665 -34.28531 -33.38797 -32.32483 -31.55649 -30.37580 -27.59259 -25.16571 -24.94715 -24.15786 -21.81393 -21.60202 -20.42215 -19.86393 -19.07951 -18.70547 -18.30676 -17.39283 -17.28901 -17.04388 -16.71850 -16.65775 -16.34710 -16.18339 -16.10725 -15.69088 -15.36968 -15.18256 -14.95913 -14.45076 -14.03344 -13.69119 -13.63389 -13.40788 -13.39643 -13.31626 -13.20353 -13.09027 -12.95649 -12.85790 -12.78334 -12.65568 -12.29486 -12.16012 -11.99138 -11.96924 -11.05116 -10.92512 -10.69560 -10.65370 -10.57003 -10.23427 -8.52353 -6.31928 -0.81904 -0.59005 -0.20095 1.19609 1.33541 1.36181 1.51852 1.66660 1.77544 2.15911 2.39360 2.63803 2.83968 2.89708 2.99664 3.26520 3.62812 3.66775 3.81825 3.86562 4.05702 4.07633 4.20788 4.33519 4.38379 4.44142 4.63642 4.67196 4.70839 4.79525 4.82928 4.85879 4.99038 5.00825 5.06815 5.20307 5.22805 5.61941 5.84474 5.95607 6.41445 6.68203 6.93318 7.77640 8.68030 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.002490 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.849747 B =11244.155796 C =12047.102232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.394 3.606 3 O -0.503 6.503 4 C -0.210 4.210 5 C -0.003 4.003 6 C -0.147 4.147 7 C -0.003 4.003 8 C -0.695 4.695 9 S 2.716 3.284 10 O -0.978 6.978 11 O -0.980 6.980 12 N -1.106 6.106 13 C 0.137 3.863 14 C -0.103 4.103 15 C 0.399 3.601 16 O -0.578 6.578 17 O -0.246 6.246 18 C -0.420 4.420 19 H 0.085 0.915 20 C -0.006 4.006 21 N -0.904 5.904 22 Si 1.016 2.984 23 H -0.262 1.262 24 H -0.263 1.263 25 H -0.260 1.260 26 C 0.016 3.984 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.188 0.812 31 H 0.175 0.825 32 H 0.152 0.848 33 H 0.431 0.569 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.278 0.722 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 6.887 -15.974 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.275 3.725 3 O -0.382 6.382 4 C -0.212 4.212 5 C -0.021 4.021 6 C -0.165 4.165 7 C -0.023 4.023 8 C -0.783 4.783 9 S 2.807 3.193 10 O -0.968 6.968 11 O -0.971 6.971 12 N -0.868 5.868 13 C 0.011 3.989 14 C -0.141 4.141 15 C 0.246 3.754 16 O -0.477 6.477 17 O -0.154 6.154 18 C -0.495 4.495 19 H 0.103 0.897 20 C -0.206 4.206 21 N -0.542 5.542 22 Si 0.835 3.165 23 H -0.186 1.186 24 H -0.187 1.187 25 H -0.184 1.184 26 C -0.004 4.004 27 H 0.136 0.864 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.205 0.795 31 H 0.192 0.808 32 H 0.170 0.830 33 H 0.269 0.731 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.087 0.913 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.327 7.109 -16.677 24.398 hybrid contribution -0.084 -0.190 0.966 0.988 sum -16.412 6.920 -15.711 23.750 Atomic orbital electron populations 1.22307 0.89438 1.06756 1.06589 1.23185 0.93842 0.86335 0.69095 1.90566 1.73388 1.35590 1.38623 1.20940 0.93933 0.96867 1.09448 1.22311 1.02741 0.89903 0.87135 1.21788 0.93361 1.00576 1.00773 1.21597 0.96591 0.96529 0.87557 1.30723 1.26587 0.99890 1.21106 1.00994 0.73762 0.72486 0.72028 1.93572 1.81381 1.44952 1.76908 1.93574 1.82049 1.44742 1.76708 1.55212 1.72444 1.28673 1.30491 1.20939 0.99732 0.87978 0.90273 1.21289 1.03800 0.95421 0.93637 1.24165 0.80452 0.88441 0.82333 1.90534 1.36161 1.46556 1.74402 1.83892 1.58207 1.44434 1.28847 1.21388 1.25180 1.01785 1.01191 0.89715 1.26524 0.94896 1.02120 0.97029 1.70066 1.25240 1.37465 1.21380 0.84705 0.79046 0.75844 0.76928 1.18647 1.18733 1.18444 1.21222 0.95031 0.96680 0.87441 0.86362 0.88951 0.86362 0.79476 0.80760 0.83040 0.73120 0.90122 0.89953 0.86161 0.85613 0.91274 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 9.75 71.24 0.69 -0.49 16 2 C 0.39 6.60 7.23 28.03 0.20 6.80 16 3 O -0.50 -13.06 17.09 -2.94 -0.05 -13.11 16 4 C -0.21 -3.56 5.87 -20.15 -0.12 -3.68 16 5 C 0.00 -0.03 9.36 22.58 0.21 0.18 16 6 C -0.15 -1.76 10.03 22.23 0.22 -1.54 16 7 C 0.00 -0.06 9.52 22.35 0.21 0.15 16 8 C -0.69 -14.99 5.94 22.23 0.13 -14.86 16 9 S 2.72 66.14 5.73 -56.49 -0.32 65.81 16 10 O -0.98 -28.91 16.75 -128.00 -2.14 -31.06 16 11 O -0.98 -28.33 17.27 -128.00 -2.21 -30.54 16 12 N -1.11 -23.82 6.00 -187.48 -1.12 -24.95 16 13 C 0.14 3.62 5.51 86.38 0.48 4.10 16 14 C -0.10 -3.15 5.95 29.85 0.18 -2.97 16 15 C 0.40 18.41 7.91 71.23 0.56 18.97 16 16 O -0.58 -28.95 15.22 20.76 0.32 -28.63 16 17 O -0.25 -13.82 9.75 14.86 0.14 -13.67 16 18 C -0.42 -24.64 9.65 67.94 0.66 -23.99 16 19 H 0.09 5.00 6.86 -2.91 -0.02 4.98 16 20 C -0.01 -0.31 5.49 84.88 0.47 0.16 16 21 N -0.90 -52.54 13.67 21.62 0.30 -52.24 16 22 Si 1.02 42.32 29.55 68.60 2.03 44.35 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 C 0.02 0.35 9.07 22.58 0.20 0.56 16 27 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.12 -0.03 6.47 -2.39 -0.02 -0.05 16 30 H 0.19 0.08 6.36 -2.91 -0.02 0.06 16 31 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 32 H 0.15 2.61 7.61 -2.91 -0.02 2.58 16 33 H 0.43 7.33 8.65 -96.75 -0.84 6.49 16 34 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 35 H 0.08 2.35 7.71 -2.39 -0.02 2.33 16 36 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 37 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.14 3.28 7.20 -2.91 -0.02 3.26 16 Total: -1.00 -86.89 361.51 1.31 -85.58 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.28 Total: 15.08 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 4.10 Total: -16.61 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -0.83 Total: -77.19 kcal Atomic # 8 Polarization: -113.07 SS G_CDS: -3.94 Total: -117.01 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 66.14 SS G_CDS: -0.32 Total: 65.81 kcal Total: -86.89 1.31 -85.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028611971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.645 kcal (2) G-P(sol) polarization free energy of solvation -86.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds