Wall clock time and date at job start Sat Apr 11 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76193 * 103.00077 * 2 1 4 4 C 1.38954 * 120.00988 * 179.97438 * 3 2 1 5 5 C 1.38039 * 119.98770 * 180.29999 * 4 3 2 6 6 C 1.38864 * 120.01224 * 359.44367 * 5 4 3 7 7 N 1.40153 * 119.99410 * 180.27641 * 6 5 4 8 8 C 1.34776 * 120.00144 * 213.59022 * 7 6 5 9 9 O 1.21289 * 119.99983 * 5.27913 * 8 7 6 10 10 C 1.50701 * 119.99525 * 185.27474 * 8 7 6 11 11 O 1.45199 * 109.46692 * 180.02562 * 10 8 7 12 12 C 1.34231 * 117.00099 * 180.02562 * 11 10 8 13 13 O 1.20829 * 119.99599 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00387 * 179.97438 * 12 11 10 15 15 S 1.80995 * 109.47431 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00132 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00418 * 359.97438 * 16 15 14 18 18 C 1.38803 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99898 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00069 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46985 * 90.00017 * 20 18 16 22 22 H 1.48500 * 109.47024 * 209.99950 * 20 18 16 23 23 H 1.48498 * 109.47075 * 330.00037 * 20 18 16 24 24 C 1.38873 * 120.01995 * 0.55777 * 6 5 4 25 25 C 1.38042 * 120.00202 * 359.72052 * 24 6 5 26 26 H 1.09007 * 109.46923 * 60.00302 * 1 2 3 27 27 H 1.09007 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47287 * 300.00209 * 1 2 3 29 29 H 1.08001 * 120.00476 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.99158 * 179.70034 * 5 4 3 31 31 H 0.97003 * 119.99141 * 33.59172 * 7 6 5 32 32 H 1.09005 * 109.47393 * 299.99847 * 10 8 7 33 33 H 1.08994 * 109.47367 * 60.00572 * 10 8 7 34 34 H 1.09000 * 109.47049 * 299.99796 * 14 12 11 35 35 H 1.09005 * 109.47135 * 59.99626 * 14 12 11 36 36 H 0.97006 * 119.99992 * 180.02562 * 19 18 16 37 37 H 1.07995 * 119.99437 * 179.70062 * 24 6 5 38 38 H 1.08007 * 119.99560 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5391 2.1232 0.0005 5 6 3.8491 3.4683 0.0068 6 6 2.8334 4.4153 0.0009 7 7 3.1487 5.7809 0.0014 8 6 2.3496 6.6567 0.6424 9 8 1.4121 6.2545 1.2984 10 6 2.6212 8.1358 0.5441 11 8 1.6292 8.8623 1.3163 12 6 1.7300 10.2008 1.3324 13 8 2.6180 10.7471 0.7217 14 6 0.7356 11.0220 2.1120 15 16 1.1360 12.7786 1.9386 16 6 -0.1469 13.4831 2.9196 17 1 -0.8706 12.8433 3.4027 18 6 -0.2282 14.8605 3.0706 19 7 0.6529 15.6404 2.4806 20 14 -1.5887 15.6075 4.1100 21 1 -1.1269 15.7300 5.5161 22 1 -1.9325 16.9526 3.5829 23 1 -2.7883 14.7337 4.0573 24 6 1.5053 4.0095 0.0004 25 6 1.1944 2.6646 -0.0001 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.3291 1.3869 0.0005 30 1 4.8818 3.7843 0.0121 31 1 3.9420 6.0956 -0.4597 32 1 3.6152 8.3497 0.9372 33 1 2.5686 8.4463 -0.4994 34 1 -0.2678 10.8381 1.7281 35 1 0.7789 10.7420 3.1646 36 1 0.5963 16.6030 2.5864 37 1 0.7157 4.7463 0.0007 38 1 0.1614 2.3492 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046256277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:45 Heat of formation + Delta-G solvation = -87.538051 kcal Electronic energy + Delta-G solvation = -22764.875296 eV Core-core repulsion = 19018.404899 eV Total energy + Delta-G solvation = -3746.470397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01616 -40.08474 -38.71078 -36.21877 -35.19556 -32.51180 -31.66809 -31.09133 -29.98337 -29.27862 -27.94895 -25.57405 -23.58942 -23.06933 -21.26119 -20.84049 -18.54995 -18.15086 -17.93218 -17.35809 -17.07514 -16.85319 -15.82331 -15.63713 -15.36331 -14.95772 -14.86657 -14.72503 -14.30466 -14.23561 -14.04524 -13.86864 -13.58928 -13.22474 -13.12797 -12.71625 -12.58741 -12.42859 -12.15071 -11.81376 -11.12890 -11.09810 -11.08702 -10.85589 -10.79185 -10.76239 -10.29311 -10.12236 -9.92738 -9.41417 -9.32435 -9.13917 -8.41205 -7.65745 -6.64332 -6.30154 -4.03225 0.67153 0.95384 1.10272 1.95068 2.01705 2.11782 2.50655 2.87480 3.19509 3.24043 3.28160 3.29512 3.50172 4.11846 4.13983 4.40931 4.50517 4.58728 4.59782 4.81479 4.81857 4.85296 5.00970 5.05502 5.06099 5.07759 5.19808 5.44366 5.50281 5.59920 5.73418 5.84055 5.87501 5.99213 6.04972 6.42189 6.50992 6.85801 7.53422 7.64146 7.99161 8.28055 9.15691 10.77344 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.001597 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.623791 B =17532.235311 C =18357.585542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.122 6.122 3 C -0.101 4.101 4 C -0.080 4.080 5 C -0.125 4.125 6 C 0.148 3.852 7 N -0.673 5.673 8 C 0.517 3.483 9 O -0.493 6.493 10 C 0.049 3.951 11 O -0.337 6.337 12 C 0.482 3.518 13 O -0.486 6.486 14 C -0.128 4.128 15 S -0.057 6.057 16 C -0.537 4.537 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.868 5.868 20 Si 0.922 3.078 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.100 4.100 25 C -0.112 4.112 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.415 0.585 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.140 0.860 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -29.890 -7.618 31.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.120 5.880 3 C -0.214 4.214 4 C -0.104 4.104 5 C -0.147 4.147 6 C 0.052 3.948 7 N -0.321 5.321 8 C 0.303 3.697 9 O -0.364 6.364 10 C -0.029 4.029 11 O -0.254 6.254 12 C 0.324 3.676 13 O -0.372 6.372 14 C -0.275 4.275 15 S 0.169 5.831 16 C -0.685 4.685 17 H 0.095 0.905 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.748 3.252 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.122 4.122 25 C -0.136 4.136 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.104 0.896 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.251 0.749 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.158 0.842 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.000 -30.318 -7.940 31.909 hybrid contribution -2.100 1.202 1.024 2.628 sum 3.900 -29.115 -6.916 30.179 Atomic orbital electron populations 1.23689 0.94534 1.07182 1.05906 1.85429 1.06730 1.03092 1.92787 1.21670 0.96648 0.96526 1.06519 1.20526 0.94340 0.95292 1.00198 1.20821 0.98590 0.91951 1.03356 1.17715 0.93684 0.82552 1.00892 1.43402 1.29119 1.05030 1.54507 1.20386 0.82666 0.87867 0.78767 1.90781 1.28657 1.79416 1.37590 1.22508 0.93741 0.87992 0.98666 1.86605 1.51558 1.21076 1.66165 1.23474 0.85091 0.79797 0.79250 1.90679 1.33714 1.71733 1.41027 1.23320 0.99735 1.02178 1.02296 1.85376 1.41483 0.88855 1.67363 1.22848 1.15333 0.94446 1.35842 0.90485 1.25002 0.96777 0.95912 0.95770 1.70007 1.34334 1.04834 1.41076 0.86111 0.80900 0.78379 0.79810 1.20163 1.20692 1.19553 1.21093 0.95579 0.95986 0.99558 1.21060 0.98454 0.92385 1.01678 0.89625 0.87347 0.89552 0.84965 0.84853 0.74877 0.87717 0.87593 0.87611 0.87605 0.92042 0.84221 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.15 101.05 0.92 0.23 16 2 S -0.12 -0.90 22.56 -107.50 -2.43 -3.33 16 3 C -0.10 -0.87 6.11 -39.06 -0.24 -1.11 16 4 C -0.08 -0.62 9.78 -39.39 -0.39 -1.01 16 5 C -0.13 -0.93 9.95 -39.42 -0.39 -1.32 16 6 C 0.15 1.35 6.28 -83.58 -0.53 0.82 16 7 N -0.67 -5.33 5.35 -9.81 -0.05 -5.39 16 8 C 0.52 5.82 7.65 -10.99 -0.08 5.74 16 9 O -0.49 -7.54 14.19 -14.11 -0.20 -7.74 16 10 C 0.05 0.55 5.95 36.01 0.21 0.76 16 11 O -0.34 -5.35 9.75 -45.90 -0.45 -5.80 16 12 C 0.48 8.91 7.98 36.00 0.29 9.20 16 13 O -0.49 -9.92 15.61 -18.75 -0.29 -10.22 16 14 C -0.13 -2.57 6.27 36.00 0.23 -2.34 16 15 S -0.06 -1.49 20.57 -107.50 -2.21 -3.71 16 16 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 17 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.49 13.22 55.49 0.73 -24.76 16 20 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C -0.10 -1.04 8.65 -39.42 -0.34 -1.38 16 25 C -0.11 -1.01 9.36 -39.39 -0.37 -1.38 16 26 H 0.08 0.36 7.75 -51.92 -0.40 -0.04 16 27 H 0.11 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.09 0.40 7.74 -51.93 -0.40 0.00 16 29 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.41 1.76 8.82 -40.82 -0.36 1.40 16 32 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 33 H 0.11 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 35 H 0.11 2.00 8.14 -51.91 -0.42 1.57 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.14 1.61 6.41 -52.49 -0.34 1.28 16 38 H 0.13 0.94 5.87 -52.48 -0.31 0.63 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -35.23 363.76 -9.24 -44.46 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.31 Total: -0.61 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.49 Total: -4.42 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.68 Total: -30.15 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.94 Total: -23.76 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -4.64 Total: -7.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.23 -9.24 -44.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046256277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.076 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds