Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48504 * 109.47051 * 269.99619 * 3 2 1 5 5 H 1.48500 * 109.47379 * 29.99967 * 3 2 1 6 6 H 1.48503 * 109.47131 * 149.99862 * 3 2 1 7 7 C 1.38811 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 180.02562 * 7 2 1 9 9 O 1.34853 * 119.99977 * 0.27661 * 7 2 1 10 10 C 1.34730 * 116.99779 * 179.72816 * 9 7 2 11 11 O 1.21507 * 120.00401 * 359.97438 * 10 9 7 12 12 C 1.47668 * 120.00085 * 180.02562 * 10 9 7 13 13 C 1.39682 * 120.15024 * 354.25628 * 12 10 9 14 14 C 1.37909 * 119.84342 * 179.69886 * 13 12 10 15 15 C 1.38400 * 120.15289 * 0.58315 * 14 13 12 16 16 C 1.38351 * 120.30821 * 359.72038 * 15 14 13 17 17 C 1.37950 * 120.15828 * 359.97128 * 16 15 14 18 18 S 1.76202 * 120.08413 * 180.02562 * 17 16 15 19 19 O 1.42097 * 106.40232 * 125.86219 * 18 17 16 20 20 O 1.42094 * 106.40225 * 258.78445 * 18 17 16 21 21 N 1.65603 * 107.21242 * 12.32197 * 18 17 16 22 22 C 1.47147 * 120.98105 * 273.05468 * 21 18 17 23 23 C 1.53712 * 108.16165 * 129.43783 * 22 21 18 24 24 O 1.42968 * 109.14797 * 52.53542 * 23 22 21 25 25 C 1.42965 * 114.16742 * 297.29171 * 24 23 22 26 26 C 1.47157 * 120.98068 * 93.34547 * 21 18 17 27 27 H 0.97000 * 120.00117 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.07959 * 359.97438 * 13 12 10 29 29 H 1.08003 * 119.92485 * 180.32400 * 14 13 12 30 30 H 1.08003 * 119.84395 * 179.73892 * 15 14 13 31 31 H 1.08009 * 119.92283 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.68208 * 249.21225 * 22 21 18 33 33 H 1.09003 * 109.68325 * 9.76918 * 22 21 18 34 34 H 1.09001 * 109.65589 * 292.57706 * 23 22 21 35 35 H 1.09001 * 109.48710 * 172.39802 * 23 22 21 36 36 H 1.08997 * 109.51386 * 302.65740 * 25 24 23 37 37 H 1.08997 * 109.55286 * 182.53042 * 25 24 23 38 38 H 1.08997 * 109.67960 * 350.22928 * 26 21 18 39 39 H 1.08998 * 109.68081 * 110.78536 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0082 -1.2022 0.0005 8 1 3.0883 -1.2021 0.0010 9 8 1.3340 -2.3700 -0.0046 10 6 2.0678 -3.4999 -0.0094 11 8 3.2812 -3.4364 -0.0095 12 6 1.3974 -4.8157 -0.0158 13 6 0.0081 -4.8958 0.1041 14 6 -0.6120 -6.1276 0.0912 15 6 0.1401 -7.2832 -0.0280 16 6 1.5172 -7.2116 -0.1408 17 6 2.1501 -5.9858 -0.1357 18 16 3.9039 -5.8968 -0.2802 19 8 4.1730 -5.0272 -1.3713 20 8 4.4039 -5.6758 1.0314 21 7 4.4349 -7.3976 -0.7364 22 6 4.7307 -8.4334 0.2661 23 6 3.9946 -9.7195 -0.1423 24 8 4.3212 -10.0366 -1.4976 25 6 3.9046 -9.0512 -2.4460 26 6 4.6308 -7.7327 -2.1558 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5796 -3.9950 0.2022 29 1 -1.6866 -6.1908 0.1786 30 1 -0.3503 -8.2455 -0.0333 31 1 2.0980 -8.1174 -0.2340 32 1 5.8047 -8.6165 0.2988 33 1 4.3836 -8.1058 1.2460 34 1 2.9186 -9.5704 -0.0526 35 1 4.3043 -10.5378 0.5078 36 1 2.8283 -8.8996 -2.3645 37 1 4.1497 -9.3878 -3.4533 38 1 4.2175 -6.9408 -2.7803 39 1 5.6950 -7.8464 -2.3626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047825049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -145.138997 kcal Electronic energy + Delta-G solvation = -28728.786120 eV Core-core repulsion = 24537.065087 eV Total energy + Delta-G solvation = -4191.721033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73571 -39.48778 -38.27076 -36.67074 -35.65063 -35.17705 -34.79123 -32.42028 -31.66411 -31.19997 -31.14831 -27.23749 -25.88552 -24.42890 -23.82784 -22.95714 -21.79090 -20.46063 -18.86430 -18.30358 -17.94403 -17.14782 -16.78475 -16.59545 -15.88720 -15.59342 -15.54208 -15.30676 -14.87769 -14.76256 -14.71380 -14.35666 -14.28750 -14.18228 -13.76959 -12.82128 -12.79467 -12.74205 -12.23990 -12.16690 -11.91798 -11.78903 -11.72086 -11.52430 -11.46907 -11.38663 -11.20575 -10.71119 -10.62194 -10.55951 -10.49495 -10.28734 -9.98961 -9.33935 -9.29369 -9.01344 -8.92422 -8.74280 -6.63507 -4.21578 0.63626 0.71814 1.17837 3.01422 3.08724 3.13155 3.19222 3.24494 3.54446 3.75528 3.98696 4.14623 4.27802 4.46147 4.53865 4.57556 4.71158 4.88175 4.94217 4.96330 4.99719 5.11321 5.15629 5.20161 5.29132 5.33612 5.42259 5.56725 5.65499 5.68745 5.75038 5.93040 6.08256 6.23881 6.36527 6.41992 6.59215 6.80593 6.86181 7.23977 7.74893 8.48911 8.84279 9.56573 10.52967 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.003853 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.468985 B = 7265.058626 C = 8169.460835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.042 3.958 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.366 4.366 8 H 0.106 0.894 9 O -0.187 6.187 10 C 0.402 3.598 11 O -0.536 6.536 12 C 0.013 3.987 13 C -0.090 4.090 14 C -0.080 4.080 15 C -0.130 4.130 16 C -0.056 4.056 17 C -0.635 4.635 18 S 2.708 3.292 19 O -0.923 6.923 20 O -0.943 6.943 21 N -1.015 6.015 22 C 0.082 3.918 23 C 0.043 3.957 24 O -0.377 6.377 25 C 0.045 3.955 26 C 0.084 3.916 27 H 0.275 0.725 28 H 0.151 0.849 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -19.705 -2.131 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.441 4.441 8 H 0.124 0.876 9 O -0.093 6.093 10 C 0.251 3.749 11 O -0.436 6.436 12 C 0.011 3.989 13 C -0.109 4.109 14 C -0.098 4.098 15 C -0.149 4.149 16 C -0.075 4.075 17 C -0.720 4.720 18 S 2.796 3.204 19 O -0.913 6.913 20 O -0.933 6.933 21 N -0.854 5.854 22 C -0.044 4.044 23 C -0.035 4.035 24 O -0.295 6.295 25 C -0.033 4.033 26 C -0.042 4.042 27 H 0.085 0.915 28 H 0.169 0.831 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.911 -18.902 -2.025 19.106 hybrid contribution -0.660 0.692 0.071 0.958 sum 1.251 -18.211 -1.954 18.358 Atomic orbital electron populations 1.69973 1.06224 1.28469 1.43844 1.25498 0.95968 0.99247 0.95745 0.85554 0.79222 0.78760 0.79100 1.19483 1.20054 1.18613 1.21570 0.93106 0.79309 1.50123 0.87648 1.83837 1.38990 1.13180 1.73250 1.20717 0.86122 0.85674 0.82412 1.90632 1.14479 1.86513 1.51947 1.18944 0.93992 0.89801 0.96203 1.21767 0.93525 0.99240 0.96346 1.21400 1.00372 0.92180 0.95879 1.21312 0.93831 0.98767 1.01033 1.20853 0.95556 0.95088 0.95985 1.31086 1.28077 0.97928 1.14927 1.02088 0.73240 0.70568 0.74548 1.93582 1.83179 1.59280 1.55236 1.93536 1.77802 1.82677 1.39280 1.58456 1.81584 1.32459 1.12923 1.22223 1.02037 0.88259 0.91864 1.23180 0.98736 0.97445 0.84171 1.87955 1.81418 1.44460 1.15661 1.23033 0.98355 0.88467 0.93491 1.22127 1.02434 0.98471 0.81137 0.91526 0.83085 0.84796 0.85211 0.85037 0.89760 0.88229 0.92485 0.87435 0.92461 0.87476 0.87822 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.04 13.67 55.49 0.76 -23.28 16 2 C 0.04 1.15 5.50 -17.52 -0.10 1.05 16 3 Si 0.95 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.37 -10.91 9.65 30.94 0.30 -10.61 16 8 H 0.11 3.19 6.86 -52.48 -0.36 2.83 16 9 O -0.19 -5.45 9.01 -21.63 -0.19 -5.65 16 10 C 0.40 10.88 7.70 34.58 0.27 11.14 16 11 O -0.54 -15.64 11.07 -29.60 -0.33 -15.97 16 12 C 0.01 0.29 5.87 -104.98 -0.62 -0.33 16 13 C -0.09 -1.62 9.62 -39.16 -0.38 -2.00 16 14 C -0.08 -1.08 10.03 -39.64 -0.40 -1.48 16 15 C -0.13 -1.56 10.04 -39.48 -0.40 -1.96 16 16 C -0.06 -0.77 9.56 -39.65 -0.38 -1.15 16 17 C -0.64 -11.80 5.86 -39.16 -0.23 -12.03 16 18 S 2.71 52.91 4.01 -107.50 -0.43 52.48 16 19 O -0.92 -21.38 14.29 -67.06 -0.96 -22.34 16 20 O -0.94 -21.10 16.38 -64.44 -1.06 -22.16 16 21 N -1.01 -13.59 2.46 -112.82 -0.28 -13.87 16 22 C 0.08 0.85 6.24 -3.32 -0.02 0.83 16 23 C 0.04 0.35 6.71 37.53 0.25 0.60 16 24 O -0.38 -3.64 10.74 -35.23 -0.38 -4.02 16 25 C 0.04 0.39 6.99 37.31 0.26 0.65 16 26 C 0.08 0.92 6.58 -3.53 -0.02 0.90 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.15 2.81 7.63 -52.48 -0.40 2.41 16 29 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 30 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.13 1.36 4.05 -52.48 -0.21 1.15 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.02 7.34 -51.93 -0.38 0.64 16 34 H 0.06 0.41 5.76 -51.93 -0.30 0.11 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.19 7.16 -51.93 -0.37 0.82 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -38.37 336.70 -8.39 -46.76 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.12 Total: 1.30 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.46 Total: -14.37 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.48 Total: -37.16 kcal Atomic # 8 Polarization: -67.22 SS G_CDS: -2.91 Total: -70.13 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 52.91 SS G_CDS: -0.43 Total: 52.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.37 -8.39 -46.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047825049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.376 kcal (2) G-P(sol) polarization free energy of solvation -38.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds