Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48504 * 109.47051 * 269.99619 * 3 2 1 5 5 H 1.48500 * 109.47379 * 29.99967 * 3 2 1 6 6 H 1.48503 * 109.47131 * 149.99862 * 3 2 1 7 7 C 1.38811 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99590 * 180.02562 * 7 2 1 9 9 O 1.34853 * 119.99977 * 0.27661 * 7 2 1 10 10 C 1.34730 * 116.99779 * 179.72816 * 9 7 2 11 11 O 1.21507 * 120.00401 * 359.97438 * 10 9 7 12 12 C 1.47668 * 120.00085 * 180.02562 * 10 9 7 13 13 C 1.39682 * 120.15024 * 354.25628 * 12 10 9 14 14 C 1.37909 * 119.84342 * 179.69886 * 13 12 10 15 15 C 1.38400 * 120.15289 * 0.58315 * 14 13 12 16 16 C 1.38351 * 120.30821 * 359.72038 * 15 14 13 17 17 C 1.37950 * 120.15828 * 359.97128 * 16 15 14 18 18 S 1.76202 * 120.08413 * 180.02562 * 17 16 15 19 19 O 1.42097 * 106.40232 * 125.86219 * 18 17 16 20 20 O 1.42094 * 106.40225 * 258.78445 * 18 17 16 21 21 N 1.65603 * 107.21242 * 12.32197 * 18 17 16 22 22 C 1.47147 * 120.98105 * 273.05468 * 21 18 17 23 23 C 1.53712 * 108.16165 * 129.43783 * 22 21 18 24 24 O 1.42968 * 109.14797 * 52.53542 * 23 22 21 25 25 C 1.42965 * 114.16742 * 297.29171 * 24 23 22 26 26 C 1.47157 * 120.98068 * 93.34547 * 21 18 17 27 27 H 0.97000 * 120.00117 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.07959 * 359.97438 * 13 12 10 29 29 H 1.08003 * 119.92485 * 180.32400 * 14 13 12 30 30 H 1.08003 * 119.84395 * 179.73892 * 15 14 13 31 31 H 1.08009 * 119.92283 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.68208 * 249.21225 * 22 21 18 33 33 H 1.09003 * 109.68325 * 9.76918 * 22 21 18 34 34 H 1.09001 * 109.65589 * 292.57706 * 23 22 21 35 35 H 1.09001 * 109.48710 * 172.39802 * 23 22 21 36 36 H 1.08997 * 109.51386 * 302.65740 * 25 24 23 37 37 H 1.08997 * 109.55286 * 182.53042 * 25 24 23 38 38 H 1.08997 * 109.67960 * 350.22928 * 26 21 18 39 39 H 1.08998 * 109.68081 * 110.78536 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0082 -1.2022 0.0005 8 1 3.0883 -1.2021 0.0010 9 8 1.3340 -2.3700 -0.0046 10 6 2.0678 -3.4999 -0.0094 11 8 3.2812 -3.4364 -0.0095 12 6 1.3974 -4.8157 -0.0158 13 6 0.0081 -4.8958 0.1041 14 6 -0.6120 -6.1276 0.0912 15 6 0.1401 -7.2832 -0.0280 16 6 1.5172 -7.2116 -0.1408 17 6 2.1501 -5.9858 -0.1357 18 16 3.9039 -5.8968 -0.2802 19 8 4.1730 -5.0272 -1.3713 20 8 4.4039 -5.6758 1.0314 21 7 4.4349 -7.3976 -0.7364 22 6 4.7307 -8.4334 0.2661 23 6 3.9946 -9.7195 -0.1423 24 8 4.3212 -10.0366 -1.4976 25 6 3.9046 -9.0512 -2.4460 26 6 4.6308 -7.7327 -2.1558 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5796 -3.9950 0.2022 29 1 -1.6866 -6.1908 0.1786 30 1 -0.3503 -8.2455 -0.0333 31 1 2.0980 -8.1174 -0.2340 32 1 5.8047 -8.6165 0.2988 33 1 4.3836 -8.1058 1.2460 34 1 2.9186 -9.5704 -0.0526 35 1 4.3043 -10.5378 0.5078 36 1 2.8283 -8.8996 -2.3645 37 1 4.1497 -9.3878 -3.4533 38 1 4.2175 -6.9408 -2.7803 39 1 5.6950 -7.8464 -2.3626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047825049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -175.116444 kcal Electronic energy + Delta-G solvation = -28730.086040 eV Core-core repulsion = 24537.065087 eV Total energy + Delta-G solvation = -4193.020952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.57890 -40.31073 -39.78994 -38.31346 -37.66545 -36.78125 -35.85297 -34.52472 -32.65309 -32.54143 -32.28837 -28.10009 -27.92563 -25.45244 -25.18439 -24.24305 -22.96777 -21.93436 -20.22689 -20.03313 -19.70546 -18.73084 -18.25503 -17.47846 -17.35082 -16.97957 -16.76539 -16.56728 -16.30354 -16.14783 -16.00141 -15.80722 -15.70205 -15.46192 -14.97441 -14.56671 -14.16151 -13.78062 -13.68664 -13.59738 -13.36735 -13.23372 -13.18190 -13.00886 -12.81003 -12.70523 -12.49161 -12.33894 -12.30356 -12.16844 -11.93221 -11.42133 -11.39166 -11.25626 -10.83993 -10.55608 -10.25798 -9.92264 -8.71806 -6.48164 -0.81351 -0.70663 -0.08897 1.26577 1.27476 1.44689 1.58108 1.83528 2.00590 2.42594 2.45297 2.71219 2.85638 2.92114 3.38168 3.44949 3.64576 3.80651 3.87935 3.96154 4.06457 4.16007 4.21054 4.21832 4.29697 4.39037 4.46104 4.65484 4.69406 4.73958 4.81868 4.90986 4.96561 5.01313 5.05369 5.09209 5.19401 5.42931 5.64147 5.67901 6.16268 6.35414 6.70903 7.43018 8.48064 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.003853 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.468985 B = 7265.058626 C = 8169.460835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.004 3.996 3 Si 1.020 2.980 4 H -0.256 1.256 5 H -0.248 1.248 6 H -0.266 1.266 7 C -0.425 4.425 8 H 0.081 0.919 9 O -0.212 6.212 10 C 0.398 3.602 11 O -0.568 6.568 12 C -0.042 4.042 13 C -0.098 4.098 14 C -0.064 4.064 15 C -0.094 4.094 16 C -0.046 4.046 17 C -0.643 4.643 18 S 2.708 3.292 19 O -0.979 6.979 20 O -0.990 6.990 21 N -1.002 6.002 22 C 0.068 3.932 23 C 0.046 3.954 24 O -0.384 6.384 25 C 0.049 3.951 26 C 0.073 3.927 27 H 0.286 0.714 28 H 0.132 0.868 29 H 0.183 0.817 30 H 0.197 0.803 31 H 0.171 0.829 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 -24.014 -2.415 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.198 4.198 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.172 1.172 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.099 0.901 9 O -0.119 6.119 10 C 0.248 3.752 11 O -0.469 6.469 12 C -0.044 4.044 13 C -0.117 4.117 14 C -0.082 4.082 15 C -0.112 4.112 16 C -0.064 4.064 17 C -0.730 4.730 18 S 2.799 3.201 19 O -0.969 6.969 20 O -0.980 6.980 21 N -0.845 5.845 22 C -0.056 4.056 23 C -0.032 4.032 24 O -0.302 6.302 25 C -0.029 4.029 26 C -0.052 4.052 27 H 0.096 0.904 28 H 0.150 0.850 29 H 0.201 0.799 30 H 0.214 0.786 31 H 0.188 0.812 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.107 -23.231 -2.309 23.346 hybrid contribution -0.058 1.602 0.150 1.610 sum -0.165 -21.629 -2.159 21.737 Atomic orbital electron populations 1.70019 1.07520 1.30145 1.44414 1.26640 0.97077 1.02151 0.93947 0.84621 0.77739 0.73981 0.79942 1.18029 1.17184 1.19078 1.21637 0.92558 0.80820 1.54990 0.90090 1.83855 1.39344 1.13692 1.75008 1.22022 0.86247 0.87360 0.79583 1.90593 1.16196 1.87582 1.52491 1.18815 0.95837 0.87653 1.02141 1.21807 0.91820 1.01261 0.96839 1.21958 1.02859 0.90252 0.93098 1.22109 0.92643 1.00884 0.95603 1.21433 0.97149 0.94061 0.93747 1.30901 1.27093 0.98985 1.16065 1.01477 0.73967 0.71687 0.72952 1.93498 1.84334 1.62672 1.56355 1.93459 1.79060 1.84264 1.41170 1.57975 1.80951 1.30881 1.14742 1.22637 1.03346 0.88452 0.91171 1.23353 0.99304 0.96549 0.84016 1.87966 1.81650 1.44380 1.16224 1.23132 0.98614 0.86502 0.94614 1.22453 1.03620 0.99840 0.79262 0.90414 0.84959 0.79936 0.78612 0.81235 0.88950 0.88335 0.90763 0.84435 0.91136 0.85000 0.89029 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.37 13.67 21.63 0.30 -52.07 16 2 C 0.00 0.25 5.50 84.89 0.47 0.72 16 3 Si 1.02 44.91 29.55 68.60 2.03 46.93 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.43 -27.67 9.65 67.96 0.66 -27.01 16 8 H 0.08 5.46 6.86 -2.91 -0.02 5.44 16 9 O -0.21 -13.57 9.01 11.38 0.10 -13.47 16 10 C 0.40 23.56 7.70 70.31 0.54 24.10 16 11 O -0.57 -36.53 11.07 29.69 0.33 -36.20 16 12 C -0.04 -1.91 5.87 -20.10 -0.12 -2.02 16 13 C -0.10 -3.55 9.62 22.54 0.22 -3.33 16 14 C -0.06 -1.42 10.03 22.23 0.22 -1.20 16 15 C -0.09 -1.61 10.04 22.34 0.22 -1.38 16 16 C -0.05 -1.05 9.56 22.23 0.21 -0.84 16 17 C -0.64 -23.93 5.86 22.54 0.13 -23.79 16 18 S 2.71 111.21 4.01 -56.49 -0.23 110.99 16 19 O -0.98 -49.30 14.29 -118.55 -1.69 -51.00 16 20 O -0.99 -47.36 16.38 -121.05 -1.98 -49.35 16 21 N -1.00 -26.14 2.46 -510.86 -1.26 -27.40 16 22 C 0.07 1.28 6.24 86.50 0.54 1.82 16 23 C 0.05 0.52 6.71 72.22 0.48 1.01 16 24 O -0.38 -5.64 10.74 -148.98 -1.60 -7.24 16 25 C 0.05 0.67 6.99 72.08 0.50 1.17 16 26 C 0.07 1.51 6.58 86.35 0.57 2.08 16 27 H 0.29 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.13 5.20 7.63 -2.91 -0.02 5.17 16 29 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 30 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.17 2.55 4.05 -2.91 -0.01 2.54 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.88 7.34 -2.39 -0.02 1.86 16 34 H 0.07 0.59 5.76 -2.39 -0.01 0.58 16 35 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 37 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 2.14 7.16 -2.39 -0.02 2.12 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -97.95 336.70 1.75 -96.20 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.10 Total: 11.29 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 4.65 Total: -28.69 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -0.96 Total: -79.47 kcal Atomic # 8 Polarization: -152.41 SS G_CDS: -4.85 Total: -157.25 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 111.21 SS G_CDS: -0.23 Total: 110.99 kcal Total: -97.95 1.75 -96.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047825049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.916 kcal (2) G-P(sol) polarization free energy of solvation -97.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds