Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81405 * 103.00179 * 2 1 4 4 C 1.50707 * 109.46940 * 179.97438 * 3 2 1 5 5 O 1.21293 * 120.00114 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99733 * 179.97438 * 4 3 2 7 7 C 1.40053 * 120.00131 * 175.42286 * 6 4 3 8 8 C 1.38863 * 120.01765 * 35.09401 * 7 6 4 9 9 C 1.38063 * 119.98838 * 180.02562 * 8 7 6 10 10 C 1.38739 * 120.01706 * 359.97438 * 9 8 7 11 11 O 1.35969 * 119.98936 * 179.97438 * 10 9 8 12 12 C 1.34247 * 116.99778 * 75.14723 * 11 10 9 13 13 O 1.20830 * 119.99789 * 355.00661 * 12 11 10 14 14 C 1.50699 * 120.00284 * 175.00815 * 12 11 10 15 15 S 1.80999 * 109.47182 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99974 * 179.97438 * 15 14 12 17 17 H 1.08007 * 119.99910 * 359.97438 * 16 15 14 18 18 C 1.38803 * 120.00214 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99569 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99930 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47002 * 90.00206 * 20 18 16 22 22 H 1.48499 * 109.46836 * 209.99693 * 20 18 16 23 23 H 1.48497 * 109.47190 * 329.99587 * 20 18 16 24 24 C 1.38741 * 120.02421 * 0.26158 * 10 9 8 25 25 C 1.38071 * 120.01694 * 359.47998 * 24 10 9 26 26 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47216 * 300.00393 * 1 2 3 28 28 H 1.09008 * 109.46684 * 60.00160 * 1 2 3 29 29 H 1.08992 * 109.47136 * 60.00095 * 3 2 1 30 30 H 1.08996 * 109.46671 * 299.99750 * 3 2 1 31 31 H 0.97001 * 120.00233 * 355.41659 * 6 4 3 32 32 H 1.07998 * 120.00389 * 0.02562 * 8 7 6 33 33 H 1.08002 * 119.99628 * 179.97438 * 9 8 7 34 34 H 1.09002 * 109.46524 * 300.00189 * 14 12 11 35 35 H 1.08996 * 109.47406 * 59.99820 * 14 12 11 36 36 H 0.97005 * 119.99414 * 180.02562 * 19 18 16 37 37 H 1.08006 * 119.98726 * 179.74276 * 24 10 9 38 38 H 1.08003 * 120.00322 * 180.23486 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7196 1.9373 0.0006 5 8 4.4405 0.9619 0.0015 6 7 4.2576 3.1730 0.0002 7 6 5.6456 3.3324 0.0976 8 6 6.4945 2.4122 -0.5033 9 6 7.8627 2.5697 -0.4065 10 6 8.3897 3.6473 0.2906 11 8 9.7372 3.8016 0.3860 12 6 10.3788 4.2449 -0.7067 13 8 9.7736 4.4011 -1.7408 14 6 11.8537 4.5476 -0.6438 15 16 12.4214 5.1223 -2.2635 16 6 14.1260 5.3951 -1.9111 17 1 14.5101 5.2031 -0.9201 18 6 14.9754 5.8568 -2.9071 19 7 14.5074 6.0903 -4.1150 20 14 16.7826 6.1467 -2.5333 21 1 17.5490 4.9034 -2.8009 22 1 17.2971 7.2406 -3.3957 23 1 16.9381 6.5267 -1.1062 24 6 7.5422 4.5644 0.8953 25 6 6.1737 4.4110 0.7947 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8032 2.2371 0.8899 30 1 1.8032 2.2371 -0.8900 31 1 3.6836 3.9519 -0.0676 32 1 6.0844 1.5735 -1.0462 33 1 8.5229 1.8539 -0.8734 34 1 12.0338 5.3236 0.1003 35 1 12.3984 3.6451 -0.3667 36 1 15.1011 6.4126 -4.8112 37 1 7.9531 5.4008 1.4413 38 1 5.5142 5.1271 1.2624 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049055418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = -96.932833 kcal Electronic energy + Delta-G solvation = -22952.953992 eV Core-core repulsion = 19206.076207 eV Total energy + Delta-G solvation = -3746.877785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.059 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.43646 -41.48891 -39.45392 -37.92335 -35.69398 -34.61580 -32.22174 -32.11977 -31.36079 -29.76262 -29.04557 -27.70933 -24.63460 -24.34765 -22.44153 -21.68561 -19.98107 -19.36399 -19.15391 -18.38739 -17.87916 -17.62366 -17.16899 -16.89941 -16.79682 -16.29042 -15.88324 -15.57224 -15.32849 -14.90975 -14.67078 -14.65131 -14.57908 -14.49224 -14.20456 -13.88951 -13.73906 -13.37559 -13.19976 -13.16386 -12.99848 -12.89457 -12.67535 -12.14200 -11.80720 -11.75423 -11.43304 -11.16368 -11.06458 -10.93287 -10.40015 -10.11655 -9.24610 -8.75099 -8.72056 -8.37917 -6.18067 -0.20357 0.22901 0.45723 0.96078 1.05071 1.35317 1.43372 1.43816 1.56076 1.61356 1.89169 1.91886 2.23268 2.64613 2.97519 3.25376 3.46972 3.66914 3.77695 3.84531 4.04976 4.13437 4.18325 4.22629 4.32905 4.38498 4.39241 4.40302 4.43753 4.73901 4.89996 4.94252 5.09953 5.22018 5.25062 5.35780 5.41147 5.80637 6.17881 6.24237 6.70096 6.96095 7.03980 8.71345 Molecular weight = 341.06amu Principal moments of inertia in cm(-1) A = 0.040163 B = 0.001650 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.983141 B =16967.704241 C =17202.548568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.276 6.276 3 C -0.105 4.105 4 C 0.523 3.477 5 O -0.544 6.544 6 N -0.650 5.650 7 C 0.145 3.855 8 C -0.120 4.120 9 C -0.117 4.117 10 C 0.041 3.959 11 O -0.288 6.288 12 C 0.483 3.517 13 O -0.503 6.503 14 C -0.106 4.106 15 S -0.135 6.135 16 C -0.549 4.549 17 H 0.087 0.913 18 C 0.017 3.983 19 N -0.910 5.910 20 Si 1.000 3.000 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.257 1.257 24 C -0.100 4.100 25 C -0.112 4.112 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.435 0.565 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.273 0.727 37 H 0.158 0.842 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.119 -4.249 13.634 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.052 6.052 3 C -0.255 4.255 4 C 0.311 3.689 5 O -0.420 6.420 6 N -0.298 5.298 7 C 0.050 3.950 8 C -0.140 4.140 9 C -0.137 4.137 10 C -0.001 4.001 11 O -0.204 6.204 12 C 0.327 3.673 13 O -0.388 6.388 14 C -0.254 4.254 15 S 0.092 5.908 16 C -0.696 4.696 17 H 0.106 0.894 18 C -0.188 4.188 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.181 1.181 24 C -0.119 4.119 25 C -0.132 4.132 26 H 0.126 0.874 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.276 0.724 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.176 0.824 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -29.784 -5.594 12.175 32.659 hybrid contribution 0.873 0.986 0.699 1.491 sum -28.911 -4.608 12.874 31.982 Atomic orbital electron populations 1.23547 0.91075 1.07648 1.06485 1.88063 1.09890 1.08919 1.98317 1.23434 0.93506 0.97996 1.10602 1.20529 0.90822 0.82570 0.75002 1.90793 1.63073 1.39954 1.48208 1.43226 1.04641 1.09549 1.72429 1.17830 0.83636 0.96447 0.97043 1.21095 0.91816 1.00871 1.00240 1.21275 0.96154 0.97683 0.98545 1.18940 0.80960 0.97094 1.03077 1.84651 1.19594 1.76869 1.39275 1.23553 0.90085 0.72573 0.81124 1.90685 1.68503 1.47934 1.31707 1.23115 0.89619 1.07327 1.05354 1.85570 1.10002 1.85677 1.09530 1.23205 0.93483 1.52171 1.00785 0.89443 1.26112 1.04824 0.93886 0.93979 1.70165 1.38048 1.43269 1.03140 0.84930 0.75797 0.78215 0.78914 1.19393 1.20224 1.18089 1.21283 0.93079 0.97850 0.99654 1.21099 0.94382 0.98866 0.98880 0.87404 0.88712 0.88880 0.83358 0.83655 0.72409 0.84907 0.86332 0.85300 0.85810 0.91836 0.82396 0.80108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.76 113.37 1.22 0.60 16 2 S -0.28 -4.12 21.52 -56.49 -1.22 -5.34 16 3 C -0.11 -0.79 6.43 71.24 0.46 -0.33 16 4 C 0.52 8.46 7.69 87.66 0.67 9.14 16 5 O -0.54 -14.75 13.30 -3.07 -0.04 -14.79 16 6 N -0.65 -7.90 5.34 -303.41 -1.62 -9.52 16 7 C 0.15 2.92 6.30 38.13 0.24 3.16 16 8 C -0.12 -3.32 8.69 22.38 0.19 -3.12 16 9 C -0.12 -3.68 9.45 22.35 0.21 -3.47 16 10 C 0.04 1.26 5.19 22.51 0.12 1.38 16 11 O -0.29 -9.73 10.03 4.20 0.04 -9.69 16 12 C 0.48 19.05 7.84 71.24 0.56 19.61 16 13 O -0.50 -23.10 15.29 21.95 0.34 -22.77 16 14 C -0.11 -4.27 6.27 71.24 0.45 -3.82 16 15 S -0.13 -7.31 20.57 -56.49 -1.16 -8.48 16 16 C -0.55 -30.70 9.50 67.96 0.65 -30.05 16 17 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 18 C 0.02 0.96 5.49 84.86 0.47 1.42 16 19 N -0.91 -54.84 13.22 21.65 0.29 -54.56 16 20 Si 1.00 42.89 29.55 68.60 2.03 44.91 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 24 C -0.10 -2.28 9.98 22.35 0.22 -2.05 16 25 C -0.11 -1.89 9.96 22.38 0.22 -1.66 16 26 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.15 0.23 8.14 -2.39 -0.02 0.22 16 31 H 0.44 1.18 8.82 -92.71 -0.82 0.36 16 32 H 0.13 3.94 6.22 -2.91 -0.02 3.93 16 33 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 34 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 35 H 0.12 4.54 8.14 -2.40 -0.02 4.52 16 36 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 37 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -83.39 366.01 4.61 -78.77 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.28 Total: 10.66 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.68 Total: -9.20 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -1.33 Total: -64.08 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: 0.34 Total: -47.25 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -11.44 SS G_CDS: -2.38 Total: -13.82 kcal Total: -83.39 4.61 -78.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049055418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.160 kcal (2) G-P(sol) polarization free energy of solvation -83.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds