Wall clock time and date at job start Sat Apr 11 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48502 * 109.47220 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47348 * 119.99704 * 3 2 1 7 7 C 1.39941 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00225 * 162.31091 * 7 2 1 9 9 C 1.41397 * 120.00269 * 342.03833 * 7 2 1 10 10 C 1.40714 * 120.24028 * 335.58952 * 9 7 2 11 11 C 1.37622 * 119.74431 * 179.73992 * 10 9 7 12 12 C 1.38634 * 120.24531 * 0.53562 * 11 10 9 13 13 S 1.76202 * 119.74570 * 179.69716 * 12 11 10 14 14 O 1.42099 * 106.40618 * 23.55622 * 13 12 11 15 15 O 1.42101 * 106.40101 * 156.48023 * 13 12 11 16 16 N 1.65603 * 107.21666 * 270.01845 * 13 12 11 17 17 C 1.47420 * 125.64706 * 269.69380 * 16 13 12 18 18 C 1.55127 * 104.72451 * 155.81633 * 17 16 13 19 19 H 1.09004 * 111.19476 * 279.19269 * 18 17 16 20 20 O 1.42898 * 110.91105 * 155.27357 * 18 17 16 21 21 C 1.55162 * 101.48525 * 37.29482 * 18 17 16 22 22 C 1.47014 * 125.64871 * 89.99997 * 16 13 12 23 23 H 1.08999 * 109.88800 * 300.44173 * 22 16 13 24 24 C 1.50699 * 109.88216 * 61.60645 * 22 16 13 25 25 O 1.20828 * 120.00158 * 0.02562 * 24 22 16 26 26 O 1.34232 * 120.00366 * 179.97438 * 24 22 16 27 27 C 1.38628 * 120.50406 * 359.71138 * 12 11 10 28 28 C 1.37624 * 120.24923 * 0.02976 * 27 12 11 29 29 H 0.97009 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.12771 * 359.96969 * 10 9 7 31 31 H 1.08000 * 119.87305 * 180.27024 * 11 10 9 32 32 H 1.08997 * 110.37121 * 274.74658 * 17 16 13 33 33 H 1.09001 * 110.37208 * 37.06980 * 17 16 13 34 34 H 0.96699 * 113.99721 * 67.97767 * 20 18 17 35 35 H 1.08994 * 110.72302 * 205.96983 * 21 18 17 36 36 H 1.09004 * 110.86885 * 82.76342 * 21 18 17 37 37 H 0.96694 * 117.00257 * 179.97438 * 26 24 22 38 38 H 1.08002 * 119.87821 * 179.97438 * 27 12 11 39 39 H 1.07997 * 120.12719 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0496 -1.2342 -0.2836 9 6 1.3527 -2.4065 0.3787 10 6 0.2231 -2.3605 1.2165 11 6 -0.4099 -3.5291 1.5739 12 6 0.0679 -4.7490 1.1206 13 16 -0.7481 -6.2376 1.5927 14 8 -2.0820 -5.8765 1.9238 15 8 -0.4277 -7.2029 0.6003 16 7 -0.0426 -6.7590 2.9973 17 6 1.1123 -7.6703 3.0918 18 6 1.7511 -7.3557 4.4700 19 1 2.3826 -6.4688 4.4184 20 8 2.4874 -8.4785 4.9591 21 6 0.4938 -7.0933 5.3406 22 6 -0.4682 -6.3948 4.3565 23 1 -0.4105 -5.3140 4.4860 24 6 -1.8788 -6.8679 4.5959 25 8 -2.4762 -7.4525 3.7234 26 8 -2.4713 -6.6409 5.7788 27 6 1.1830 -4.8066 0.2989 28 6 1.8288 -3.6503 -0.0754 29 1 -0.4851 0.8401 -0.0004 30 1 -0.1478 -1.4115 1.5748 31 1 -1.2797 -3.4959 2.2133 32 1 0.7810 -8.7080 3.0527 33 1 1.8224 -7.4675 2.2900 34 1 3.2821 -8.6810 4.4468 35 1 0.7339 -6.4367 6.1768 36 1 0.0665 -8.0302 5.6980 37 1 -3.3768 -6.9628 5.8852 38 1 1.5469 -5.7624 -0.0480 39 1 2.6975 -3.6975 -0.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:14 Heat of formation + Delta-G solvation = -187.611249 kcal Electronic energy + Delta-G solvation = -28213.861311 eV Core-core repulsion = 24020.298544 eV Total energy + Delta-G solvation = -4193.562768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.50656 -38.59923 -37.63262 -36.54525 -36.12461 -35.58608 -35.07216 -34.09743 -30.58958 -30.31245 -29.53424 -29.12832 -25.87267 -24.17616 -21.75354 -21.45097 -21.39484 -21.08562 -18.65361 -18.33960 -17.69900 -17.62832 -17.36150 -16.73294 -16.16826 -15.71631 -15.49956 -15.28083 -14.63617 -14.20929 -14.13972 -13.73848 -13.53121 -13.39210 -13.19816 -13.04710 -12.55545 -12.45387 -12.25271 -11.94836 -11.79678 -11.59929 -11.46008 -11.37600 -11.33605 -11.26719 -11.21968 -11.11980 -10.91657 -10.56850 -10.44226 -10.23686 -9.80820 -9.68465 -9.52980 -8.96382 -8.02322 -7.77403 -7.19340 -4.85927 1.03615 2.20572 2.28686 2.83516 2.84787 2.86952 2.88556 2.92377 3.41355 3.61835 3.97587 4.16481 4.22447 4.38759 4.62022 4.79802 5.01334 5.06881 5.13490 5.30011 5.31400 5.47203 5.59078 5.66657 5.84427 5.96864 6.02899 6.04663 6.32582 6.54658 6.62325 6.67687 6.89505 6.98824 7.27509 7.36034 7.37673 7.57142 7.70521 7.90581 7.95276 8.25570 8.45014 8.58778 9.72044 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.003511 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.274972 B = 7973.335934 C = 8229.562141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.182 4.182 11 C -0.016 4.016 12 C -0.791 4.791 13 S 2.703 3.297 14 O -0.959 6.959 15 O -0.975 6.975 16 N -0.994 5.994 17 C 0.091 3.909 18 C 0.093 3.907 19 H 0.086 0.914 20 O -0.558 6.558 21 C -0.105 4.105 22 C 0.167 3.833 23 H 0.121 0.879 24 C 0.461 3.539 25 O -0.482 6.482 26 O -0.517 6.517 27 C 0.001 3.999 28 C -0.238 4.238 29 H 0.291 0.709 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.384 0.616 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.409 0.591 38 H 0.103 0.897 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -7.303 11.060 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.203 4.203 11 C -0.036 4.036 12 C -0.888 4.888 13 S 2.804 3.196 14 O -0.950 6.950 15 O -0.966 6.966 16 N -0.829 5.829 17 C -0.035 4.035 18 C 0.033 3.967 19 H 0.104 0.896 20 O -0.363 6.363 21 C -0.144 4.144 22 C 0.058 3.942 23 H 0.138 0.862 24 C 0.299 3.701 25 O -0.366 6.366 26 O -0.329 6.329 27 C -0.019 4.019 28 C -0.258 4.258 29 H 0.102 0.898 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.232 0.768 35 H 0.120 0.880 36 H 0.108 0.892 37 H 0.268 0.732 38 H 0.121 0.879 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.386 -7.645 10.688 13.356 hybrid contribution 0.460 1.198 -0.543 1.394 sum 2.846 -6.447 10.144 12.352 Atomic orbital electron populations 1.69815 1.07960 1.30641 1.30058 1.26157 0.94897 1.02198 0.91845 0.86180 0.80167 0.79074 0.80447 1.18516 1.19848 1.18320 1.19931 0.98512 0.91237 1.36386 0.89391 1.17849 0.90097 0.92131 0.86359 1.21345 0.99751 0.96886 1.02283 1.20236 0.95824 0.91765 0.95790 1.29270 1.18673 1.15442 1.25374 1.01230 0.73250 0.74068 0.71040 1.93519 1.33601 1.84676 1.83180 1.93473 1.85356 1.61407 1.56330 1.59014 1.44588 1.60966 1.18312 1.22709 0.87565 0.94387 0.98792 1.23055 0.92555 0.89299 0.91835 0.89585 1.86473 1.42301 1.49876 1.57623 1.22503 0.93058 1.02011 0.96847 1.20660 0.87782 1.01725 0.84080 0.86189 1.23780 0.89680 0.77130 0.79541 1.90770 1.64712 1.37360 1.43807 1.84474 1.34640 1.76519 1.37219 1.20154 0.91846 0.97416 0.92492 1.21019 1.04233 0.92735 1.07851 0.89776 0.85956 0.88001 0.90522 0.89557 0.76781 0.88044 0.89203 0.73194 0.87902 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.99 10.96 55.55 0.61 -17.38 16 2 C 0.07 1.62 5.14 -17.35 -0.09 1.53 16 3 Si 0.92 16.55 29.59 -169.99 -5.03 11.52 16 4 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 7 C -0.43 -10.35 9.05 -37.74 -0.34 -10.69 16 8 H 0.09 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.14 3.45 5.57 -106.83 -0.60 2.85 16 10 C -0.18 -4.46 8.70 -38.87 -0.34 -4.80 16 11 C -0.02 -0.36 9.49 -39.66 -0.38 -0.74 16 12 C -0.79 -17.41 6.00 -39.29 -0.24 -17.64 16 13 S 2.70 55.46 5.57 -107.50 -0.60 54.87 16 14 O -0.96 -21.98 14.14 -66.56 -0.94 -22.92 16 15 O -0.97 -21.90 16.84 -57.17 -0.96 -22.86 16 16 N -0.99 -15.69 3.13 -105.52 -0.33 -16.02 16 17 C 0.09 1.14 6.72 -2.41 -0.02 1.13 16 18 C 0.09 0.91 4.44 -24.46 -0.11 0.80 16 19 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 20 O -0.56 -4.98 13.47 -35.23 -0.47 -5.46 16 21 C -0.11 -1.06 6.18 -24.89 -0.15 -1.21 16 22 C 0.17 2.22 3.58 -68.11 -0.24 1.97 16 23 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 24 C 0.46 6.81 6.97 36.01 0.25 7.06 16 25 O -0.48 -9.11 14.65 -26.35 -0.39 -9.50 16 26 O -0.52 -5.63 13.40 -39.26 -0.53 -6.15 16 27 C 0.00 0.02 9.49 -39.66 -0.38 -0.35 16 28 C -0.24 -5.47 9.80 -38.87 -0.38 -5.86 16 29 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 30 H 0.12 3.02 6.16 -52.48 -0.32 2.70 16 31 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.38 1.83 9.12 45.56 0.42 2.24 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.91 7.84 -51.93 -0.41 0.51 16 37 H 0.41 2.84 9.10 45.56 0.41 3.26 16 38 H 0.10 2.03 7.60 -52.49 -0.40 1.63 16 39 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -34.32 346.60 -9.21 -43.53 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -2.78 Total: 11.10 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -3.01 Total: -25.94 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.28 Total: -33.40 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -3.29 Total: -66.90 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.60 Total: 54.87 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.32 -9.21 -43.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.080 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds