Wall clock time and date at job start Sat Apr 11 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48502 * 109.47220 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47348 * 119.99704 * 3 2 1 7 7 C 1.39941 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00225 * 162.31091 * 7 2 1 9 9 C 1.41397 * 120.00269 * 342.03833 * 7 2 1 10 10 C 1.40714 * 120.24028 * 335.58952 * 9 7 2 11 11 C 1.37622 * 119.74431 * 179.73992 * 10 9 7 12 12 C 1.38634 * 120.24531 * 0.53562 * 11 10 9 13 13 S 1.76202 * 119.74570 * 179.69716 * 12 11 10 14 14 O 1.42099 * 106.40618 * 23.55622 * 13 12 11 15 15 O 1.42101 * 106.40101 * 156.48023 * 13 12 11 16 16 N 1.65603 * 107.21666 * 270.01845 * 13 12 11 17 17 C 1.47420 * 125.64706 * 269.69380 * 16 13 12 18 18 C 1.55127 * 104.72451 * 155.81633 * 17 16 13 19 19 H 1.09004 * 111.19476 * 279.19269 * 18 17 16 20 20 O 1.42898 * 110.91105 * 155.27357 * 18 17 16 21 21 C 1.55162 * 101.48525 * 37.29482 * 18 17 16 22 22 C 1.47014 * 125.64871 * 89.99997 * 16 13 12 23 23 H 1.08999 * 109.88800 * 300.44173 * 22 16 13 24 24 C 1.50699 * 109.88216 * 61.60645 * 22 16 13 25 25 O 1.20828 * 120.00158 * 0.02562 * 24 22 16 26 26 O 1.34232 * 120.00366 * 179.97438 * 24 22 16 27 27 C 1.38628 * 120.50406 * 359.71138 * 12 11 10 28 28 C 1.37624 * 120.24923 * 0.02976 * 27 12 11 29 29 H 0.97009 * 120.00125 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.12771 * 359.96969 * 10 9 7 31 31 H 1.08000 * 119.87305 * 180.27024 * 11 10 9 32 32 H 1.08997 * 110.37121 * 274.74658 * 17 16 13 33 33 H 1.09001 * 110.37208 * 37.06980 * 17 16 13 34 34 H 0.96699 * 113.99721 * 67.97767 * 20 18 17 35 35 H 1.08994 * 110.72302 * 205.96983 * 21 18 17 36 36 H 1.09004 * 110.86885 * 82.76342 * 21 18 17 37 37 H 0.96694 * 117.00257 * 179.97438 * 26 24 22 38 38 H 1.08002 * 119.87821 * 179.97438 * 27 12 11 39 39 H 1.07997 * 120.12719 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0496 -1.2342 -0.2836 9 6 1.3527 -2.4065 0.3787 10 6 0.2231 -2.3605 1.2165 11 6 -0.4099 -3.5291 1.5739 12 6 0.0679 -4.7490 1.1206 13 16 -0.7481 -6.2376 1.5927 14 8 -2.0820 -5.8765 1.9238 15 8 -0.4277 -7.2029 0.6003 16 7 -0.0426 -6.7590 2.9973 17 6 1.1123 -7.6703 3.0918 18 6 1.7511 -7.3557 4.4700 19 1 2.3826 -6.4688 4.4184 20 8 2.4874 -8.4785 4.9591 21 6 0.4938 -7.0933 5.3406 22 6 -0.4682 -6.3948 4.3565 23 1 -0.4105 -5.3140 4.4860 24 6 -1.8788 -6.8679 4.5959 25 8 -2.4762 -7.4525 3.7234 26 8 -2.4713 -6.6409 5.7788 27 6 1.1830 -4.8066 0.2989 28 6 1.8288 -3.6503 -0.0754 29 1 -0.4851 0.8401 -0.0004 30 1 -0.1478 -1.4115 1.5748 31 1 -1.2797 -3.4959 2.2133 32 1 0.7810 -8.7080 3.0527 33 1 1.8224 -7.4675 2.2900 34 1 3.2821 -8.6810 4.4468 35 1 0.7339 -6.4367 6.1768 36 1 0.0665 -8.0302 5.6980 37 1 -3.3768 -6.9628 5.8852 38 1 1.5469 -5.7624 -0.0480 39 1 2.6975 -3.6975 -0.7153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130622.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:13 Heat of formation + Delta-G solvation = -214.805245 kcal Electronic energy + Delta-G solvation = -28215.040531 eV Core-core repulsion = 24020.298544 eV Total energy + Delta-G solvation = -4194.741988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59668 -39.54327 -39.40168 -38.21007 -37.17227 -36.78757 -36.51442 -35.82605 -32.09549 -31.60970 -31.31577 -30.08934 -27.63912 -25.21936 -23.33468 -23.02069 -22.56394 -22.25916 -20.01418 -19.44462 -19.37170 -18.96284 -18.48089 -18.15014 -17.34555 -17.21252 -16.90225 -16.40263 -15.98180 -15.84127 -15.28373 -15.04875 -15.00961 -14.67769 -14.43288 -14.12831 -14.01990 -13.96303 -13.59289 -13.54612 -13.15570 -13.06844 -12.98226 -12.89217 -12.80606 -12.74206 -12.56467 -12.42536 -12.09341 -11.98477 -11.61365 -11.53976 -11.36308 -11.20213 -11.01640 -10.21539 -9.81393 -9.58100 -8.88470 -6.66493 -0.53003 0.45682 1.03688 1.16780 1.36969 1.44828 1.51782 1.84878 2.10944 2.14605 2.50565 2.97500 3.10638 3.12546 3.51323 3.58231 3.75099 3.94184 4.19348 4.20977 4.27359 4.29523 4.38502 4.51569 4.75938 4.79012 4.85292 4.89860 4.96085 5.05305 5.07972 5.20892 5.27952 5.50711 5.57041 5.60491 5.75276 5.91713 6.13024 6.46919 6.66424 6.78956 6.89684 6.95857 8.06381 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015113 B = 0.003511 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.274972 B = 7973.335934 C = 8229.562141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.461 4.461 8 H 0.096 0.904 9 C 0.112 3.888 10 C -0.204 4.204 11 C -0.019 4.019 12 C -0.798 4.798 13 S 2.728 3.272 14 O -0.987 6.987 15 O -0.999 6.999 16 N -0.995 5.995 17 C 0.079 3.921 18 C 0.108 3.892 19 H 0.103 0.897 20 O -0.564 6.564 21 C -0.098 4.098 22 C 0.155 3.845 23 H 0.135 0.865 24 C 0.462 3.538 25 O -0.532 6.532 26 O -0.501 6.501 27 C -0.002 4.002 28 C -0.252 4.252 29 H 0.299 0.701 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.403 0.597 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.427 0.573 38 H 0.124 0.876 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -7.084 12.612 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.487 4.487 8 H 0.114 0.886 9 C 0.108 3.892 10 C -0.224 4.224 11 C -0.040 4.040 12 C -0.892 4.892 13 S 2.827 3.173 14 O -0.978 6.978 15 O -0.990 6.990 16 N -0.833 5.833 17 C -0.046 4.046 18 C 0.047 3.953 19 H 0.121 0.879 20 O -0.372 6.372 21 C -0.136 4.136 22 C 0.046 3.954 23 H 0.152 0.848 24 C 0.302 3.698 25 O -0.421 6.421 26 O -0.314 6.314 27 C -0.022 4.022 28 C -0.272 4.272 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.254 0.746 35 H 0.150 0.850 36 H 0.107 0.893 37 H 0.289 0.711 38 H 0.142 0.858 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.965 -7.423 12.246 14.859 hybrid contribution -0.083 0.984 -0.929 1.356 sum 3.882 -6.439 11.317 13.587 Atomic orbital electron populations 1.69860 1.09563 1.32064 1.30544 1.27061 0.95503 1.05376 0.90609 0.85070 0.78736 0.74369 0.80625 1.17921 1.19121 1.17701 1.20258 0.99101 0.91991 1.37377 0.88577 1.18202 0.90633 0.93324 0.86994 1.21358 1.00702 0.96972 1.03393 1.20389 0.95949 0.91817 0.95799 1.29580 1.18366 1.16020 1.25236 1.00266 0.72473 0.73134 0.71379 1.93478 1.35485 1.84979 1.83832 1.93432 1.85611 1.61647 1.58272 1.58477 1.45524 1.61081 1.18188 1.23051 0.86727 0.93546 1.01258 1.22930 0.92663 0.90116 0.89628 0.87893 1.86445 1.43278 1.49547 1.57918 1.22574 0.92106 1.02298 0.96667 1.21088 0.87954 1.03012 0.83312 0.84763 1.24108 0.90126 0.75940 0.79612 1.90758 1.65955 1.39852 1.45491 1.84430 1.35988 1.75817 1.35174 1.20426 0.91638 0.98068 0.92021 1.21252 1.05044 0.92623 1.08300 0.88970 0.86998 0.87066 0.90847 0.88835 0.74605 0.85007 0.89269 0.71092 0.85808 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.17 10.96 21.82 0.24 -37.93 16 2 C 0.03 1.54 5.14 85.26 0.44 1.98 16 3 Si 0.99 33.25 29.59 68.60 2.03 35.28 16 4 H -0.26 -8.26 7.11 99.48 0.71 -7.56 16 5 H -0.27 -8.55 7.11 99.48 0.71 -7.84 16 6 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 7 C -0.46 -22.19 9.05 23.46 0.21 -21.97 16 8 H 0.10 4.29 7.91 -2.91 -0.02 4.27 16 9 C 0.11 5.64 5.57 -21.29 -0.12 5.52 16 10 C -0.20 -10.23 8.70 22.73 0.20 -10.03 16 11 C -0.02 -0.90 9.49 22.22 0.21 -0.69 16 12 C -0.80 -35.17 6.00 22.46 0.13 -35.03 16 13 S 2.73 111.91 5.57 -56.49 -0.31 111.60 16 14 O -0.99 -45.80 14.14 -119.02 -1.68 -47.48 16 15 O -1.00 -44.90 16.84 -128.00 -2.16 -47.06 16 16 N -0.99 -30.40 3.13 -487.75 -1.52 -31.92 16 17 C 0.08 1.85 6.72 86.93 0.58 2.43 16 18 C 0.11 1.78 4.44 32.06 0.14 1.92 16 19 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 20 O -0.56 -8.25 13.47 -148.98 -2.01 -10.26 16 21 C -0.10 -1.66 6.18 31.79 0.20 -1.47 16 22 C 0.15 3.84 3.58 44.60 0.16 4.00 16 23 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 24 C 0.46 13.16 6.97 71.24 0.50 13.66 16 25 O -0.53 -20.16 14.65 29.22 0.43 -19.73 16 26 O -0.50 -9.95 13.40 -51.44 -0.69 -10.64 16 27 C 0.00 -0.07 9.49 22.22 0.21 0.14 16 28 C -0.25 -11.65 9.80 22.73 0.22 -11.42 16 29 H 0.30 12.78 8.30 -92.70 -0.77 12.01 16 30 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 31 H 0.11 4.82 7.60 -2.91 -0.02 4.80 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.40 2.55 9.12 -74.06 -0.68 1.87 16 35 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.56 7.84 -2.39 -0.02 1.54 16 37 H 0.43 5.19 9.10 -74.06 -0.67 4.52 16 38 H 0.12 4.77 7.60 -2.91 -0.02 4.75 16 39 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -75.38 346.60 -2.81 -78.19 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.22 Total: 30.92 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 3.09 Total: -50.96 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.29 Total: -69.85 kcal Atomic # 8 Polarization: -129.07 SS G_CDS: -6.11 Total: -135.17 kcal Atomic # 14 Polarization: 33.25 SS G_CDS: 2.03 Total: 35.28 kcal Atomic # 16 Polarization: 111.91 SS G_CDS: -0.31 Total: 111.60 kcal Total: -75.38 -2.81 -78.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130622.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.618 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds