Wall clock time and date at job start Sat Apr 11 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00376 * 2 1 4 4 H 1.48497 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46688 * 300.00385 * 3 2 1 6 6 H 1.48501 * 109.47003 * 59.99432 * 3 2 1 7 7 C 1.39951 * 119.99812 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99774 * 197.68121 * 7 2 1 9 9 C 1.41393 * 120.00219 * 17.67543 * 7 2 1 10 10 C 1.40711 * 120.24642 * 204.15730 * 9 7 2 11 11 C 1.37611 * 119.74734 * 179.97438 * 10 9 7 12 12 C 1.38637 * 120.25026 * 359.97438 * 11 10 9 13 13 S 1.76198 * 119.75139 * 180.02562 * 12 11 10 14 14 O 1.42097 * 106.40138 * 353.78411 * 13 12 11 15 15 O 1.42096 * 106.40047 * 220.86139 * 13 12 11 16 16 N 1.65607 * 107.21684 * 107.32263 * 13 12 11 17 17 C 1.47151 * 120.98220 * 85.31573 * 16 13 12 18 18 C 1.53291 * 108.38119 * 230.55671 * 17 16 13 19 19 O 1.42967 * 109.22246 * 307.69169 * 18 17 16 20 20 C 1.42965 * 114.16026 * 62.58457 * 19 18 17 21 21 C 1.47261 * 120.95820 * 265.33285 * 16 13 12 22 22 H 1.08998 * 109.67976 * 249.15952 * 21 16 13 23 23 C 1.50704 * 109.74609 * 9.74368 * 21 16 13 24 24 O 1.20827 * 119.99892 * 61.36528 * 23 21 16 25 25 O 1.34229 * 120.00437 * 241.36206 * 23 21 16 26 26 C 1.38632 * 120.49624 * 0.27229 * 12 11 10 27 27 C 1.37618 * 120.25186 * 359.44851 * 26 12 11 28 28 H 0.96998 * 119.99571 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.12574 * 359.95073 * 10 9 7 30 30 H 1.08005 * 119.88106 * 180.02562 * 11 10 9 31 31 H 1.08994 * 109.68307 * 110.83169 * 17 16 13 32 32 H 1.09001 * 109.70844 * 350.29259 * 17 16 13 33 33 H 1.09003 * 109.51455 * 187.77676 * 18 17 16 34 34 H 1.09001 * 109.55926 * 67.64612 * 18 17 16 35 35 H 1.08998 * 109.51069 * 57.34869 * 20 19 18 36 36 H 1.09004 * 109.51146 * 177.44233 * 20 19 18 37 37 H 0.96699 * 117.00232 * 179.97438 * 25 23 21 38 38 H 1.07998 * 119.87524 * 179.70503 * 26 12 11 39 39 H 1.08001 * 120.13363 * 180.27253 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0497 -1.2342 0.2835 9 6 1.3511 -2.4075 -0.3729 10 6 1.8288 -3.6502 0.0826 11 6 1.1812 -4.8072 -0.2857 12 6 0.0619 -4.7517 -1.1017 13 16 -0.7575 -6.2413 -1.5646 14 8 0.0423 -7.3083 -1.0739 15 8 -1.1068 -6.0980 -2.9345 16 7 -2.1822 -6.2991 -0.7223 17 6 -3.3893 -5.6267 -1.2284 18 6 -3.9691 -4.7626 -0.1028 19 8 -4.1335 -5.5646 1.0692 20 6 -2.9124 -6.0921 1.5933 21 6 -2.2778 -7.0249 0.5555 22 1 -2.9002 -7.9107 0.4288 23 6 -0.9012 -7.4324 1.0138 24 8 -0.0677 -6.5892 1.2464 25 8 -0.6011 -8.7321 1.1637 26 6 -0.4146 -3.5333 -1.5605 27 6 0.2137 -2.3631 -1.2002 28 1 -0.4849 0.8401 -0.0004 29 1 2.7006 -3.6958 0.7184 30 1 1.5458 -5.7622 0.0630 31 1 -4.1235 -6.3717 -1.5347 32 1 -3.1295 -4.9960 -2.0787 33 1 -4.9364 -4.3651 -0.4104 34 1 -3.2887 -3.9387 0.1122 35 1 -2.2274 -5.2735 1.8143 36 1 -3.1191 -6.6503 2.5064 37 1 0.2947 -8.9446 1.4594 38 1 -1.2846 -3.5020 -2.1996 39 1 -0.1617 -1.4146 -1.5552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130979.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:31 Heat of formation + Delta-G solvation = -196.994620 kcal Electronic energy + Delta-G solvation = -29294.867967 eV Core-core repulsion = 25100.898306 eV Total energy + Delta-G solvation = -4193.969661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.67647 -39.92562 -39.37732 -38.30085 -37.01812 -36.97467 -35.94243 -35.80723 -32.86916 -32.07007 -31.27532 -28.48253 -27.63366 -26.37810 -23.49317 -23.38097 -22.92575 -22.23337 -20.08521 -19.47893 -19.34386 -18.84466 -18.39317 -18.02772 -17.36963 -17.10759 -16.78608 -16.45645 -16.28838 -15.94071 -15.73962 -15.56613 -15.20321 -15.07000 -14.61511 -14.17831 -14.05852 -13.88865 -13.61688 -13.38070 -13.21964 -13.20439 -13.13398 -12.94355 -12.90484 -12.63256 -12.48228 -12.33058 -12.04109 -11.90898 -11.62304 -11.54657 -11.45268 -11.23902 -11.08636 -10.02029 -9.77313 -9.50556 -8.88064 -6.65592 -0.58819 0.48349 1.01367 1.14150 1.34723 1.40610 1.51412 1.75778 2.05418 2.11158 2.48177 2.74409 2.85748 3.24274 3.46357 3.57475 3.71044 3.96842 4.07591 4.20909 4.21284 4.27965 4.41200 4.49985 4.51675 4.64694 4.83228 4.87366 4.92987 4.94384 5.08488 5.24989 5.30297 5.53053 5.61161 5.71532 5.76892 5.92942 5.96882 6.17119 6.47714 6.68247 6.81167 6.99252 8.07241 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.004266 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.656113 B = 6561.911754 C = 6950.468161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.113 3.887 10 C -0.268 4.268 11 C 0.029 3.971 12 C -0.792 4.792 13 S 2.711 3.289 14 O -0.984 6.984 15 O -0.990 6.990 16 N -0.996 5.996 17 C 0.085 3.915 18 C 0.041 3.959 19 O -0.369 6.369 20 C 0.063 3.937 21 C 0.132 3.868 22 H 0.145 0.855 23 C 0.476 3.524 24 O -0.523 6.523 25 O -0.496 6.496 26 C -0.019 4.019 27 C -0.205 4.205 28 H 0.299 0.701 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.142 0.858 37 H 0.428 0.572 38 H 0.117 0.883 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -8.214 2.429 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.494 4.494 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.288 4.288 11 C 0.009 3.991 12 C -0.886 4.886 13 S 2.810 3.190 14 O -0.974 6.974 15 O -0.980 6.980 16 N -0.837 5.837 17 C -0.039 4.039 18 C -0.036 4.036 19 O -0.286 6.286 20 C -0.015 4.015 21 C 0.024 3.976 22 H 0.163 0.837 23 C 0.318 3.682 24 O -0.413 6.413 25 O -0.309 6.309 26 C -0.039 4.039 27 C -0.225 4.225 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.161 0.839 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.159 0.841 37 H 0.289 0.711 38 H 0.135 0.865 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.387 -8.475 1.847 12.781 hybrid contribution 1.645 1.319 0.468 2.159 sum -7.742 -7.157 2.315 10.794 Atomic orbital electron populations 1.69840 1.09231 1.31771 1.30839 1.26979 0.95643 1.05011 0.90693 0.85013 0.79353 0.75141 0.79448 1.18055 1.18307 1.18479 1.20221 0.98747 0.92209 1.38249 0.89523 1.18194 0.90793 0.93004 0.87023 1.21195 1.05401 0.93125 1.09103 1.20338 0.91400 0.97443 0.89937 1.29472 1.16467 1.16549 1.26093 1.00786 0.71959 0.73784 0.72451 1.93371 1.68579 1.54860 1.80635 1.93478 1.83823 1.87916 1.32829 1.57899 1.26349 1.66440 1.32966 1.22455 0.86111 0.97755 0.97546 1.23196 1.03756 0.92125 0.84563 1.87958 1.28896 1.67987 1.43769 1.22893 0.87069 0.96316 0.95262 1.21350 0.92051 0.98499 0.85661 0.83711 1.22928 0.89616 0.81486 0.74170 1.90848 1.50074 1.52728 1.47623 1.84312 1.40837 1.25787 1.79935 1.20390 0.97014 0.91642 0.94874 1.21321 1.00731 0.97137 1.03344 0.88978 0.88140 0.86455 0.86785 0.88172 0.83909 0.93762 0.93301 0.84052 0.71062 0.86532 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.17 10.92 21.83 0.24 -37.93 16 2 C 0.04 1.70 5.15 85.26 0.44 2.13 16 3 Si 0.99 35.02 29.59 68.60 2.03 37.05 16 4 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 6 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 7 C -0.47 -24.14 9.06 23.46 0.21 -23.92 16 8 H 0.09 4.30 7.91 -2.91 -0.02 4.27 16 9 C 0.11 6.11 5.58 -21.29 -0.12 5.99 16 10 C -0.27 -13.85 9.80 22.73 0.22 -13.63 16 11 C 0.03 1.40 7.89 22.22 0.18 1.57 16 12 C -0.79 -36.29 5.72 22.46 0.13 -36.16 16 13 S 2.71 105.14 5.03 -56.49 -0.28 104.86 16 14 O -0.98 -39.78 12.61 -116.47 -1.47 -41.25 16 15 O -0.99 -41.38 16.76 -128.00 -2.15 -43.52 16 16 N -1.00 -29.69 3.34 -493.02 -1.65 -31.34 16 17 C 0.08 1.99 6.55 86.35 0.57 2.56 16 18 C 0.04 0.93 6.98 72.08 0.50 1.43 16 19 O -0.37 -8.66 10.74 -148.98 -1.60 -10.26 16 20 C 0.06 1.51 6.24 72.08 0.45 1.96 16 21 C 0.13 3.37 3.55 44.20 0.16 3.53 16 22 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16 23 C 0.48 14.30 4.33 71.24 0.31 14.61 16 24 O -0.52 -19.71 12.34 29.20 0.36 -19.35 16 25 O -0.50 -11.95 13.19 -46.02 -0.61 -12.56 16 26 C -0.02 -0.90 9.53 22.22 0.21 -0.69 16 27 C -0.21 -10.62 8.70 22.73 0.20 -10.43 16 28 H 0.30 12.62 8.30 -92.71 -0.77 11.85 16 29 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 30 H 0.12 5.51 5.93 -2.91 -0.02 5.49 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 2.42 7.30 -2.39 -0.02 2.40 16 33 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.47 7.87 -2.39 -0.02 1.45 16 36 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.43 7.51 9.10 -74.06 -0.67 6.84 16 38 H 0.12 4.74 7.95 -2.91 -0.02 4.72 16 39 H 0.12 5.99 6.13 -2.91 -0.02 5.97 16 Total: -1.00 -70.11 334.18 -1.23 -71.35 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.44 Total: 33.99 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 3.45 Total: -51.04 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -1.41 Total: -69.27 kcal Atomic # 8 Polarization: -121.48 SS G_CDS: -5.46 Total: -126.94 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Atomic # 16 Polarization: 105.14 SS G_CDS: -0.28 Total: 104.86 kcal Total: -70.11 -1.23 -71.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130979.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.648 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds