Wall clock time and date at job start Sat Apr 11 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48493 * 109.47457 * 240.00598 * 3 2 1 5 5 H 1.48499 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47178 * 120.00276 * 3 2 1 7 7 C 1.39942 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00366 * 190.54965 * 7 2 1 9 9 C 1.41396 * 120.00136 * 10.54930 * 7 2 1 10 10 C 1.40717 * 120.24804 * 208.49671 * 9 7 2 11 11 C 1.37617 * 119.74939 * 179.97438 * 10 9 7 12 12 C 1.38635 * 120.24491 * 0.02562 * 11 10 9 13 13 S 1.76197 * 119.74876 * 179.97438 * 12 11 10 14 14 O 1.42100 * 106.40028 * 326.74416 * 13 12 11 15 15 O 1.42102 * 106.40342 * 193.82116 * 13 12 11 16 16 N 1.65602 * 107.21828 * 80.28241 * 13 12 11 17 17 C 1.47157 * 120.98232 * 276.47898 * 16 13 12 18 18 C 1.53290 * 108.37981 * 129.48855 * 17 16 13 19 19 O 1.42958 * 109.22768 * 52.30500 * 18 17 16 20 20 C 1.42965 * 114.16427 * 297.41736 * 19 18 17 21 21 C 1.47158 * 120.98227 * 96.50455 * 16 13 12 22 22 H 1.09001 * 109.68035 * 110.75093 * 21 16 13 23 23 C 1.50696 * 109.67750 * 350.23718 * 21 16 13 24 24 O 1.20825 * 120.00189 * 292.12148 * 23 21 16 25 25 O 1.34234 * 119.99874 * 112.40613 * 23 21 16 26 26 C 1.38632 * 120.50365 * 0.27132 * 12 11 10 27 27 C 1.37627 * 120.24837 * 359.44775 * 26 12 11 28 28 H 0.96999 * 119.99795 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.12271 * 359.96107 * 10 9 7 30 30 H 1.07999 * 119.87735 * 180.02562 * 11 10 9 31 31 H 1.08997 * 109.68007 * 249.21082 * 17 16 13 32 32 H 1.08999 * 109.67696 * 9.76620 * 17 16 13 33 33 H 1.09005 * 109.50990 * 172.22808 * 18 17 16 34 34 H 1.09003 * 109.51847 * 292.32299 * 18 17 16 35 35 H 1.09002 * 109.51370 * 302.65383 * 20 19 18 36 36 H 1.09004 * 109.51004 * 182.50311 * 20 19 18 37 37 H 0.96702 * 116.99452 * 179.72433 * 25 23 21 38 38 H 1.08005 * 119.87877 * 179.70545 * 26 12 11 39 39 H 1.08000 * 120.12878 * 180.27164 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0742 -1.2200 0.1707 9 6 1.3189 -2.4260 -0.2253 10 6 1.7989 -3.6267 0.3298 11 6 1.1198 -4.8024 0.1049 12 6 -0.0327 -4.8068 -0.6656 13 16 -0.8914 -6.3196 -0.9456 14 8 0.0975 -7.3388 -0.9966 15 8 -1.8070 -6.0714 -2.0037 16 7 -1.8050 -6.6215 0.4022 17 6 -1.2195 -7.2753 1.5834 18 6 -1.5616 -6.4360 2.8196 19 8 -2.9718 -6.2044 2.8560 20 6 -3.4707 -5.4554 1.7452 21 6 -3.2265 -6.2444 0.4538 22 1 -3.8449 -7.1420 0.4488 23 6 -3.5675 -5.3866 -0.7374 24 8 -3.1028 -4.2756 -0.8347 25 8 -4.3921 -5.8548 -1.6875 26 6 -0.5113 -3.6309 -1.2224 27 6 0.1483 -2.4425 -1.0060 28 1 -0.4850 0.8401 0.0004 29 1 2.6969 -3.6256 0.9298 30 1 1.4861 -5.7251 0.5302 31 1 -1.6358 -8.2767 1.6928 32 1 -0.1372 -7.3374 1.4698 33 1 -1.2573 -6.9717 3.7189 34 1 -1.0364 -5.4822 2.7690 35 1 -2.9532 -4.4976 1.6900 36 1 -4.5400 -5.2856 1.8714 37 1 -4.5846 -5.2665 -2.4304 38 1 -1.4076 -3.6467 -1.8249 39 1 -0.2288 -1.5269 -1.4371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:34 Heat of formation + Delta-G solvation = -196.937757 kcal Electronic energy + Delta-G solvation = -29307.539453 eV Core-core repulsion = 25113.572258 eV Total energy + Delta-G solvation = -4193.967195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67770 -39.92011 -39.38487 -38.31287 -37.00558 -37.00254 -35.96185 -35.77709 -32.85258 -32.04541 -31.29529 -28.47180 -27.62732 -26.39385 -23.51466 -23.26949 -23.02080 -22.21122 -20.10632 -19.45355 -19.34710 -18.84670 -18.41103 -18.01663 -17.30182 -17.19844 -16.75444 -16.48277 -16.33510 -15.86729 -15.73554 -15.58423 -15.18462 -15.05900 -14.62562 -14.17272 -14.05199 -13.84227 -13.67335 -13.36999 -13.24158 -13.20140 -13.12564 -12.90001 -12.88711 -12.63577 -12.47875 -12.34264 -12.06277 -11.94407 -11.58927 -11.55553 -11.41584 -11.28388 -11.09094 -10.01718 -9.73170 -9.51955 -8.80239 -6.67033 -0.61652 0.46614 1.02321 1.11230 1.34382 1.43172 1.48210 1.77627 2.04749 2.11150 2.51985 2.73074 2.86628 3.21499 3.45193 3.54575 3.72201 3.96746 4.08458 4.21070 4.23530 4.29361 4.39763 4.50162 4.53091 4.65331 4.87026 4.90043 4.93683 4.94985 5.08479 5.22275 5.29855 5.54475 5.57657 5.73689 5.79358 5.94542 5.97594 6.15168 6.51802 6.68904 6.81160 6.99916 8.12604 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.004241 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.638051 B = 6599.951400 C = 6683.167686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.470 4.470 8 H 0.092 0.908 9 C 0.113 3.887 10 C -0.251 4.251 11 C -0.005 4.005 12 C -0.791 4.791 13 S 2.709 3.291 14 O -0.985 6.985 15 O -0.982 6.982 16 N -0.996 5.996 17 C 0.084 3.916 18 C 0.040 3.960 19 O -0.369 6.369 20 C 0.064 3.936 21 C 0.132 3.868 22 H 0.145 0.855 23 C 0.474 3.526 24 O -0.526 6.526 25 O -0.496 6.496 26 C 0.002 3.998 27 C -0.208 4.208 28 H 0.295 0.705 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.145 0.855 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.139 0.861 37 H 0.426 0.574 38 H 0.114 0.886 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.104 -9.372 5.133 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.497 4.497 8 H 0.110 0.890 9 C 0.110 3.890 10 C -0.271 4.271 11 C -0.024 4.024 12 C -0.885 4.885 13 S 2.808 3.192 14 O -0.975 6.975 15 O -0.973 6.973 16 N -0.836 5.836 17 C -0.039 4.039 18 C -0.037 4.037 19 O -0.287 6.287 20 C -0.015 4.015 21 C 0.025 3.975 22 H 0.163 0.837 23 C 0.316 3.684 24 O -0.415 6.415 25 O -0.308 6.308 26 C -0.018 4.018 27 C -0.229 4.229 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.163 0.837 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.157 0.843 37 H 0.287 0.713 38 H 0.132 0.868 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.221 -9.842 4.837 13.131 hybrid contribution 0.576 2.121 -0.665 2.296 sum -6.645 -7.721 4.172 11.008 Atomic orbital electron populations 1.69876 1.09307 1.31461 1.32317 1.27040 0.95670 1.05231 0.90906 0.85053 0.78615 0.74506 0.80452 1.18202 1.19066 1.17692 1.20186 0.96839 0.91309 1.41383 0.88953 1.18247 0.91063 0.93469 0.86269 1.21308 1.04272 0.93263 1.08246 1.20443 0.91803 0.97497 0.92698 1.29559 1.15180 1.18131 1.25650 1.00872 0.72457 0.73450 0.72396 1.93479 1.60425 1.57418 1.86210 1.93368 1.63370 1.86956 1.53602 1.57910 1.17798 1.74738 1.33202 1.22484 1.00124 0.97958 0.83333 1.23224 0.81465 0.99726 0.99324 1.87957 1.23311 1.74597 1.42799 1.22872 1.02427 0.92854 0.83335 1.21349 0.83498 1.00368 0.92267 0.83716 1.22959 0.76015 0.85996 0.83412 1.90831 1.50322 1.22795 1.77588 1.84307 1.61161 1.51174 1.34161 1.20525 0.95662 0.91640 0.94016 1.21350 1.00450 0.96696 1.04403 0.89429 0.86609 0.85263 0.86826 0.87802 0.83719 0.93625 0.93326 0.84326 0.71267 0.86825 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.01 10.81 21.83 0.24 -40.78 16 2 C 0.03 1.41 5.26 85.26 0.45 1.86 16 3 Si 0.99 35.89 29.57 68.60 2.03 37.92 16 4 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.27 -9.14 7.11 99.48 0.71 -8.44 16 6 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 7 C -0.47 -24.13 9.07 23.46 0.21 -23.92 16 8 H 0.09 4.42 7.87 -2.91 -0.02 4.40 16 9 C 0.11 6.04 5.55 -21.29 -0.12 5.93 16 10 C -0.25 -12.01 9.80 22.73 0.22 -11.78 16 11 C 0.00 -0.20 9.49 22.22 0.21 0.01 16 12 C -0.79 -35.82 5.93 22.46 0.13 -35.69 16 13 S 2.71 103.45 5.11 -56.49 -0.29 103.16 16 14 O -0.98 -39.60 16.58 -128.00 -2.12 -41.73 16 15 O -0.98 -40.10 12.47 -116.11 -1.45 -41.54 16 16 N -1.00 -29.14 3.34 -493.25 -1.65 -30.79 16 17 C 0.08 1.87 6.55 86.35 0.57 2.43 16 18 C 0.04 0.85 6.98 72.08 0.50 1.35 16 19 O -0.37 -8.52 10.74 -148.98 -1.60 -10.12 16 20 C 0.06 1.56 6.22 72.08 0.45 2.01 16 21 C 0.13 3.44 3.56 44.22 0.16 3.60 16 22 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 23 C 0.47 14.84 4.25 71.23 0.30 15.15 16 24 O -0.53 -20.70 12.65 28.93 0.37 -20.33 16 25 O -0.50 -12.85 12.86 -45.07 -0.58 -13.43 16 26 C 0.00 0.08 8.18 22.22 0.18 0.26 16 27 C -0.21 -11.40 8.66 22.73 0.20 -11.20 16 28 H 0.29 13.50 8.30 -92.71 -0.77 12.74 16 29 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.13 4.73 7.84 -2.91 -0.02 4.71 16 31 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 2.26 7.44 -2.39 -0.02 2.25 16 33 H 0.15 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.51 7.76 -2.39 -0.02 1.49 16 36 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.43 8.48 9.10 -74.06 -0.67 7.80 16 38 H 0.11 5.72 5.42 -2.91 -0.02 5.70 16 39 H 0.10 5.98 6.19 -2.91 -0.02 5.96 16 Total: -1.00 -71.17 333.64 -1.15 -72.31 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.44 Total: 35.33 kcal Atomic # 6 Polarization: -53.47 SS G_CDS: 3.47 Total: -50.00 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.41 Total: -71.56 kcal Atomic # 8 Polarization: -121.77 SS G_CDS: -5.38 Total: -127.16 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Atomic # 16 Polarization: 103.45 SS G_CDS: -0.29 Total: 103.16 kcal Total: -71.17 -1.15 -72.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.624 kcal (2) G-P(sol) polarization free energy of solvation -71.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds