Wall clock time and date at job start Sat Apr 11 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34947 * 126.03574 * 2 1 4 4 C 1.35307 * 107.74913 * 179.97438 * 3 2 1 5 5 S 1.76202 * 126.04297 * 179.97438 * 4 3 2 6 6 O 1.42095 * 106.40437 * 203.54288 * 5 4 3 7 7 O 1.42109 * 106.39953 * 336.45944 * 5 4 3 8 8 N 1.65600 * 107.21910 * 89.99905 * 5 4 3 9 9 C 1.39928 * 119.99794 * 60.36080 * 8 5 4 10 10 C 1.38715 * 120.07869 * 35.53062 * 9 8 5 11 11 C 1.38214 * 120.01728 * 179.74934 * 10 9 8 12 12 C 1.38535 * 120.17077 * 0.55017 * 11 10 9 13 13 F 1.35111 * 119.91701 * 179.72614 * 12 11 10 14 14 C 1.38353 * 120.16313 * 359.70440 * 12 11 10 15 15 C 1.38720 * 119.97584 * 0.02562 * 14 12 11 16 16 O 1.35799 * 120.08618 * 179.97438 * 15 14 12 17 17 C 1.34804 * 116.99918 * 5.59470 * 16 15 14 18 18 H 1.08004 * 119.99522 * 354.93542 * 17 16 15 19 19 C 1.38622 * 120.00357 * 174.94134 * 17 16 15 20 20 N 1.31585 * 119.99933 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00385 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46940 * 89.99733 * 21 19 17 23 23 H 1.48497 * 109.47489 * 209.99645 * 21 19 17 24 24 H 1.48499 * 109.47028 * 330.00309 * 21 19 17 25 25 C 1.39873 * 107.92211 * 0.02562 * 4 3 2 26 26 N 1.30836 * 108.19836 * 359.97438 * 25 4 3 27 27 H 1.08998 * 109.46722 * 90.00515 * 1 2 3 28 28 H 1.09003 * 109.46725 * 209.99692 * 1 2 3 29 29 H 1.09000 * 109.47510 * 330.00144 * 1 2 3 30 30 H 1.08006 * 126.12201 * 0.26098 * 3 2 1 31 31 H 0.96996 * 120.00021 * 240.35900 * 8 5 4 32 32 H 1.08002 * 119.99309 * 359.97438 * 10 9 8 33 33 H 1.07996 * 119.91865 * 180.27468 * 11 10 9 34 34 H 1.07992 * 120.01153 * 180.02562 * 14 12 11 35 35 H 0.96996 * 120.00234 * 180.02562 * 20 19 17 36 36 H 1.07995 * 125.90203 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6667 0.0006 5 16 4.9751 1.6942 0.0002 6 8 6.0299 0.9126 -0.5435 7 8 4.5724 2.9431 -0.5452 8 7 5.3730 1.9811 1.5819 9 6 5.6902 0.9130 2.4283 10 6 6.3763 -0.1863 1.9334 11 6 6.6935 -1.2383 2.7718 12 6 6.3180 -1.2039 4.1048 13 9 6.6259 -2.2376 4.9186 14 6 5.6288 -0.1134 4.6050 15 6 5.3120 0.9485 3.7705 16 8 4.6352 2.0197 4.2590 17 6 4.4020 2.0429 5.5865 18 1 4.6763 1.1957 6.1977 19 6 3.8102 3.1539 6.1670 20 7 3.4765 4.1861 5.4224 21 14 3.4864 3.1857 8.0065 22 1 4.6652 3.7565 8.7067 23 1 2.2921 4.0232 8.2845 24 1 3.2449 1.8028 8.4906 25 6 3.5348 -0.7320 0.0003 26 7 2.2893 -1.1327 0.0002 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.9280 2.1194 0.0040 31 1 5.3862 2.8896 1.9215 32 1 6.6659 -0.2185 0.8934 33 1 7.2316 -2.0914 2.3857 34 1 5.3377 -0.0890 5.6446 35 1 3.0627 4.9637 5.8286 36 1 4.4055 -1.3708 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122365332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:52 Heat of formation + Delta-G solvation = -32.280994 kcal Electronic energy + Delta-G solvation = -27658.310788 eV Core-core repulsion = 23380.316092 eV Total energy + Delta-G solvation = -4277.994696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.068 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.31093 -41.26225 -39.39723 -37.16606 -36.51577 -35.62422 -34.18167 -33.48185 -32.46646 -30.48283 -29.49416 -27.89272 -27.13205 -25.57094 -22.38362 -21.97504 -21.70497 -21.30669 -19.16449 -18.42054 -18.11041 -17.86565 -17.13447 -16.71841 -15.70135 -15.60611 -15.33232 -15.22267 -15.02756 -14.94626 -14.50613 -14.33936 -13.77385 -13.66410 -13.46485 -13.22731 -13.00692 -12.90277 -12.67394 -12.56732 -11.96866 -11.94889 -11.79681 -11.61555 -11.55336 -11.30745 -11.08198 -10.66674 -10.65012 -10.51754 -10.08187 -9.73750 -9.63483 -9.24509 -9.02409 -8.03862 -7.26213 -6.65277 -4.23551 0.65740 1.55917 1.81431 2.02664 2.30303 2.35904 3.02172 3.04075 3.08137 3.34902 3.79759 3.97489 4.17318 4.28588 4.55531 4.74511 4.80261 4.89775 4.90613 5.01217 5.04866 5.17732 5.39792 5.46813 5.55597 5.61985 5.74342 5.98963 6.36353 6.47111 6.57418 6.69235 6.78762 6.82530 6.88582 7.16181 7.35254 7.39492 7.60427 7.78713 8.79961 9.41710 10.51219 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.004870 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.882999 B = 5747.950118 C = 6684.035116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.364 5.364 3 C 0.185 3.815 4 C -0.810 4.810 5 S 2.725 3.275 6 O -0.959 6.959 7 O -0.967 6.967 8 N -1.034 6.034 9 C 0.073 3.927 10 C -0.102 4.102 11 C -0.218 4.218 12 C 0.130 3.870 13 F -0.151 7.151 14 C -0.256 4.256 15 C 0.162 3.838 16 O -0.162 6.162 17 C -0.395 4.395 18 H 0.095 0.905 19 C 0.044 3.956 20 N -0.855 5.855 21 Si 0.942 3.058 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.267 1.267 25 C 0.141 3.859 26 N -0.296 5.296 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.193 0.807 31 H 0.430 0.570 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.273 0.727 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -5.645 -8.331 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.141 5.141 3 C 0.031 3.969 4 C -0.909 4.909 5 S 2.815 3.185 6 O -0.949 6.949 7 O -0.957 6.957 8 N -0.786 5.786 9 C -0.024 4.024 10 C -0.124 4.124 11 C -0.239 4.239 12 C 0.110 3.890 13 F -0.129 7.129 14 C -0.277 4.277 15 C 0.104 3.896 16 O -0.064 6.064 17 C -0.470 4.470 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.489 5.489 21 Si 0.766 3.234 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.049 4.049 26 N -0.115 5.115 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.210 0.790 31 H 0.268 0.732 32 H 0.180 0.820 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.212 -6.073 -9.217 11.815 hybrid contribution -0.289 0.537 1.839 1.938 sum -4.501 -5.537 -7.378 10.264 Atomic orbital electron populations 1.22048 0.73643 1.05373 1.03803 1.49044 1.07315 1.04040 1.53742 1.22476 0.89227 0.94257 0.90927 1.31511 1.16453 1.09073 1.33898 1.01009 0.73263 0.72620 0.71640 1.93479 1.52998 1.71718 1.76684 1.93559 1.83791 1.41981 1.76373 1.52806 1.81656 1.14595 1.29560 1.16528 1.06070 0.90841 0.88923 1.21332 0.96557 0.92523 1.01964 1.20426 1.09800 1.01740 0.91926 1.17491 0.98540 0.84761 0.88203 1.91423 1.91343 1.57156 1.73016 1.20926 1.09419 0.95038 1.02342 1.18886 0.90982 0.88370 0.91365 1.83949 1.61103 1.35650 1.25669 1.21372 1.41775 1.03837 0.80051 0.88801 1.25295 0.96109 0.94216 1.00574 1.70021 1.37569 1.05224 1.36095 0.85690 0.78499 0.78946 0.80254 1.19636 1.20163 1.19094 1.23527 0.95737 0.92049 0.93585 1.77397 1.01700 1.07496 1.24911 0.90161 0.88723 0.88734 0.79029 0.73181 0.81950 0.85473 0.83992 0.91725 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.47 59.85 0.69 1.43 16 2 N -0.36 -4.75 4.01 -68.16 -0.27 -5.02 16 3 C 0.18 2.50 11.23 -17.23 -0.19 2.31 16 4 C -0.81 -12.22 6.00 -40.01 -0.24 -12.46 16 5 S 2.73 43.32 5.66 -107.50 -0.61 42.71 16 6 O -0.96 -15.95 14.83 -57.17 -0.85 -16.80 16 7 O -0.97 -16.95 17.85 -57.17 -1.02 -17.97 16 8 N -1.03 -18.10 5.64 32.54 0.18 -17.92 16 9 C 0.07 1.40 6.26 -83.52 -0.52 0.87 16 10 C -0.10 -1.75 9.26 -39.41 -0.37 -2.11 16 11 C -0.22 -3.67 10.02 -39.48 -0.40 -4.06 16 12 C 0.13 2.44 7.29 -39.43 -0.29 2.15 16 13 F -0.15 -2.73 17.26 2.25 0.04 -2.69 16 14 C -0.26 -5.32 9.14 -39.36 -0.36 -5.68 16 15 C 0.16 3.56 6.66 -38.94 -0.26 3.30 16 16 O -0.16 -4.09 9.33 -0.03 0.00 -4.09 16 17 C -0.39 -10.13 9.49 30.87 0.29 -9.84 16 18 H 0.09 2.26 5.21 -52.48 -0.27 1.99 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -22.94 13.67 55.48 0.76 -22.19 16 21 Si 0.94 19.28 29.55 -169.99 -5.02 14.26 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 C 0.14 2.09 11.81 -17.36 -0.21 1.89 16 26 N -0.30 -4.50 12.58 30.62 0.39 -4.11 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.19 2.03 8.06 -52.48 -0.42 1.61 16 31 H 0.43 7.56 8.72 -34.47 -0.30 7.26 16 32 H 0.16 2.56 5.17 -52.49 -0.27 2.29 16 33 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.14 2.97 5.64 -52.49 -0.30 2.68 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.20 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -32.80 337.51 -6.08 -38.88 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -2.81 Total: 11.03 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.95 Total: -21.19 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 1.05 Total: -49.24 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.87 Total: -38.86 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 43.32 SS G_CDS: -0.61 Total: 42.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.80 -6.08 -38.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122365332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.602 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds